Lko_03622-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01129598.1:1566568-1600430[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0049 0.23 11.6 3.6 2 23 481 502 480 502 0.97 2 15 0.00016 0.0077 16.2 0.7 1 20 508 527 508 529 0.94 3 15 0.0006 0.028 14.4 4.6 1 23 556 578 556 578 0.98 4 15 0.00016 0.0075 16.2 0.8 2 23 587 608 586 608 0.97 5 15 0.00068 0.032 14.3 0.6 2 23 615 636 614 636 0.97 6 15 4e-06 0.00019 21.3 2.1 1 23 642 664 642 664 0.95 7 15 0.0019 0.09 12.8 4.6 1 20 686 705 686 708 0.96 8 15 2.2e-05 0.001 18.9 2.1 1 23 714 737 714 737 0.96 9 15 0.0099 0.46 10.6 2.3 1 23 753 776 753 776 0.96 10 15 5.6 2.6e+02 2.0 2.4 2 13 782 793 781 794 0.88 11 15 0.003 0.14 12.2 0.4 2 23 845 866 844 866 0.97 12 15 6.9e-05 0.0032 17.4 5.2 2 23 897 918 896 918 0.97 13 15 6.8e-06 0.00032 20.6 0.1 1 23 924 947 924 947 0.96 14 15 0.0048 0.23 11.6 0.3 3 23 955 975 953 975 0.97 15 15 0.0033 0.16 12.1 3.8 1 20 981 1000 981 1002 0.94
Sequence Information
- Coding Sequence
- ATGGATATCAATGTTGATCAATTATGGCATGATACGCTCTTGGTGGAGCAGGATGGTAAATTGGCATTCACAGATATGTGTAGACTATGTGGTAGCTCCAGTTTAAATCTTATCTCTCTTTGTGGGGATGAAGGTTTAGGGAATGATCTGCAATCCAAAATTGATGTAGTATTCATGTTATTACTACTTCTGCCATTCGTAACTTGTGTTagctttttcttcaaatttaaaaatatgaatttccaGGTTTCAGAGAGTGACAACCTCCCTCATAAAGTCTGTTCTCACTGTGCTTCAACTTTAGTTTCATGGCATGAACTAATGCTTAACTGtgttaaaattgatgaaaaacttAGAGAGATACTCCGAAGTGTAAATGTACAATCCAGTGGTGAATTTGAACACTTTGATGAAAACATTAGCTGTTTGATTGAGGATGAGGCAAATTTAAATGCTTCTTTGGTTTGTGAGGGgagtgaaaagttaaaaaatggaAAGGAACCTGCTGTTCCACTTACACCTACTGATGATGAAGTTCATAGGTTTCAGGCAGGACAATGTCAGATGCTCACAGATTCTCACAACCAGACTGGAAAGGATAGAATACATTCTTCCCAACCTGTGGATGGTGAGGGATTGAAAATTAAACCCTACGGAGATGTTGCTGAAAGCATTCTTTTGCGCCATCCAGATGTTACGTACGATCCCATTTGCAAGACTGCAGAGGTGaaatattattctcttatatTAGACAAACCTCTGTGTCATGAAAAATTTCCCGATAATTTTCCACAACAAATGCAAAATGTCAAAACATCATCAATTGTGGATAACTTGCTTAACGATTCCCAACGTTGCTACAATGAAATTTCCAGTATTGATGAAACAGTGTGTATGTTTAATGAAAGTAGCTCAGATACCAGCTTCCAATTGTCTCTTGATCATAATTATGTATTGCCAGAAAGTAATGTTTCTGTGTATGAGAATGACAGTGTAAATCAACGGGAATCACAAAAACTACAATCATTACAACAGAATTCGCAACTAGTGCTACCAAAACTACAGGAATTGCTACTACCACAGCCAGAACAACAGGATTTGCAACTTCTACAACTAGAACAAAAGCATTTGCAACTTTCAAACAAACAGCTTTCACAACTACCACAACCAGAACCACAGCATTCACAACAGCTACTATCAAAACAGCAGCTACTACAAGAAGATCAACAAGTAGAGCAAGTAGAACAAGTAGAGCAAGTAGAACAACTAGAACCACAAACACGACAGGAACTTAAACAAATTTATGGAGGGCCTTCAAAAGCTTCAAAGAGAGCATTCTATTTTAGATCAAAACCATATGAagttaagataataaaaatgttagatGATAAAGTTGTTTGTAAGGTGGTAAGGAGACAGCATGGAAACAAAAGCATTGTACAATGCAACTATtgttctcaaaatttcaaaaacctcCATGTCTTGCAAACCCACACCCGGTTTCATGCTGCAATAATGCCTTTCTATTGCAAATATTGTGGAAAAAATTTTTATCTCTCTGCATCGTTGAGACAACATTTAGGAACCTGTTCAGATGTTAACTATAGTCCTGACTCTGTTCTAGAAGATGATTTTGAGACAAGTTCTGTTGAGATGAACAAAGGGTTTTCGTGTGAAATATGTGGTAAAAAATGTAAGTTAAAAGCTAGTTTAAGAGAGCATTTGAAACATCATGAAGGCAAAGCAAGAATGAAACAGAAGTGCGAATTTTGCGGAGCTAGATTTTCCAAAAAGGCTGAACTAATGGAACATACCAAATCTCATGATGCCACTGTTTTGTCAACGTGTAATGTTTGTGAAAAGTCATTCTTGAACAATAAGGATTTACAGGAACATCAAATTAGCCACTCTGACGTTCGGCCATTTCTTTGTATGATCTGTGGAATGTCGTATAAAAGAAAGTCTCATCTTACACGTCACCTTCTTGTTCACGCCAATACTAATCGTAGTATTTCGTTGCGCAGACCTCACTTACGAAAATTACCAGGTGAAGTGTTTAGTTGTGATAAATGTGGAAAAGTGTGTCGTACAAGATATCTTTTATCATTACACATGGTGTGTCATACTGGGGAGCGCAACCATGTGTGCTACTCCTGCGGTAAAGGATTTGTACAGTCAAGTGCTCTTACACGTCACTTGCATACCGTTCATGAGTGGGAAAACAAAGTTATATTTGCAACAGGAAATAAAACGATGTTTCATTGTGCTCATTGTGAAGTGGCATTTGGATCTAGAAAGGAACTGAACGTTCATCTCTCCAGGAAACATTCAGTATTTGTCCAGTATTGTGAAAATTGTGGAAAACTTTTCTGTACCCGAAAAGTAAACTCAAATGACAATTCACATACTAATCTTAAACTTCCATCCAATTTTAAGAAAGGTCAAAATGACAAGAATGTACCTGTTCTTAAAGATGATCATAGTTACTGCTCAGGACAGACTGTGGTGAAGAAGTCCAAAGAGATTGATATGACTTGCGATGTGTGCAGTAGCTCATTCTCAGGAAAGCAAGAGTTACTTCAACACCTCCAAAGTCATGAGTTTAAAGTAGTTGAGTTAAAAGACAAATCTGGCTCCACTttgcaaaaatttgaacatatcAAAGTTTCTAAACTGGAGAAAAGTGTTCGCTGTGACAAGTGCAAAAAGAATTTCTGTTCTAAAGACAGCTATCAAAGACATTATCGTATACATACTGGTGAGAAACCATACACTTGTGATGTGTGTGGTAAGCAATTCCGAGATGGGGGAGGTCTCAGACGTCATTTAAGAGATGTTCATGACAGAATAAAAAGTTTTGGTTGTGATATATGTGGTCGTTTCTTTGCCTCCAAAGCAACTAGAGATGATCATAGACGTATTCATACAGGAGAACGACCTTACATATGTCACTGCTGTGGAAAGACATTTAAATCAAAAGCGTCTCTATTTACTCACAGATCTGATGATTAG
- Protein Sequence
- MDINVDQLWHDTLLVEQDGKLAFTDMCRLCGSSSLNLISLCGDEGLGNDLQSKIDVVFMLLLLLPFVTCVSFFFKFKNMNFQVSESDNLPHKVCSHCASTLVSWHELMLNCVKIDEKLREILRSVNVQSSGEFEHFDENISCLIEDEANLNASLVCEGSEKLKNGKEPAVPLTPTDDEVHRFQAGQCQMLTDSHNQTGKDRIHSSQPVDGEGLKIKPYGDVAESILLRHPDVTYDPICKTAEVKYYSLILDKPLCHEKFPDNFPQQMQNVKTSSIVDNLLNDSQRCYNEISSIDETVCMFNESSSDTSFQLSLDHNYVLPESNVSVYENDSVNQRESQKLQSLQQNSQLVLPKLQELLLPQPEQQDLQLLQLEQKHLQLSNKQLSQLPQPEPQHSQQLLSKQQLLQEDQQVEQVEQVEQVEQLEPQTRQELKQIYGGPSKASKRAFYFRSKPYEVKIIKMLDDKVVCKVVRRQHGNKSIVQCNYCSQNFKNLHVLQTHTRFHAAIMPFYCKYCGKNFYLSASLRQHLGTCSDVNYSPDSVLEDDFETSSVEMNKGFSCEICGKKCKLKASLREHLKHHEGKARMKQKCEFCGARFSKKAELMEHTKSHDATVLSTCNVCEKSFLNNKDLQEHQISHSDVRPFLCMICGMSYKRKSHLTRHLLVHANTNRSISLRRPHLRKLPGEVFSCDKCGKVCRTRYLLSLHMVCHTGERNHVCYSCGKGFVQSSALTRHLHTVHEWENKVIFATGNKTMFHCAHCEVAFGSRKELNVHLSRKHSVFVQYCENCGKLFCTRKVNSNDNSHTNLKLPSNFKKGQNDKNVPVLKDDHSYCSGQTVVKKSKEIDMTCDVCSSSFSGKQELLQHLQSHEFKVVELKDKSGSTLQKFEHIKVSKLEKSVRCDKCKKNFCSKDSYQRHYRIHTGEKPYTCDVCGKQFRDGGGLRRHLRDVHDRIKSFGCDICGRFFASKATRDDHRRIHTGERPYICHCCGKTFKSKASLFTHRSDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -