Basic Information

Insect: Laupala kohalensis
Gene Symbol: -
Assembly: GCA_002313205.1
Location: NNCF01125850.1:335276-341576[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0009 0.043 13.9 3.3 1 23 261 283 261 283 0.97

2 10 8.1e-05 0.0038 17.2 6.5 1 23 289 311 289 311 0.96

3 10 8.4e-05 0.004 17.1 5.3 1 23 317 339 317 339 0.99

4 10 3.9e-05 0.0019 18.2 2.7 1 23 345 367 345 367 0.96

5 10 1.3e-06 5.9e-05 22.9 0.9 1 23 373 395 373 395 0.97

6 10 9.8e-06 0.00046 20.1 0.1 1 23 401 423 401 423 0.98

7 10 0.00014 0.0068 16.4 1.5 1 23 428 450 428 450 0.97

8 10 1.2e-06 5.4e-05 23.0 1.1 1 23 457 479 457 479 0.97

9 10 8.9e-05 0.0042 17.0 1.2 1 23 485 507 485 507 0.98

10 10 1.6e-06 7.7e-05 22.5 3.5 1 23 570 592 570 592 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0009	0.043	13.9	3.3	1	23	261	283	261	283	0.97
2	10	8.1e-05	0.0038	17.2	6.5	1	23	289	311	289	311	0.96
3	10	8.4e-05	0.004	17.1	5.3	1	23	317	339	317	339	0.99
4	10	3.9e-05	0.0019	18.2	2.7	1	23	345	367	345	367	0.96
5	10	1.3e-06	5.9e-05	22.9	0.9	1	23	373	395	373	395	0.97
6	10	9.8e-06	0.00046	20.1	0.1	1	23	401	423	401	423	0.98
7	10	0.00014	0.0068	16.4	1.5	1	23	428	450	428	450	0.97
8	10	1.2e-06	5.4e-05	23.0	1.1	1	23	457	479	457	479	0.97
9	10	8.9e-05	0.0042	17.0	1.2	1	23	485	507	485	507	0.98
10	10	1.6e-06	7.7e-05	22.5	3.5	1	23	570	592	570	592	0.98

Sequence Information

Coding Sequence: ATGCACTTTGACTCTCTGAGAGTTGTATCTGAACATCTTGTGGAGAGAATCAAATTGGAAGATACAAGTTTTCGCGACACTGTGCAGAATAATTCCAGTTGCCAAATGTATTCTTCTACTGTGACAGTCCCTAGTTCTCAGAATGCTCTGACATCAGCCTCTCAGTGTAACATATCCAGTAATAATCAGTGTATTAGTAGTTCTCCTACCATAAAATTTCAAGTGGAAGGTACTGAAGGAAGTAATGGTGCTGTAATTAGTAAggataattgtaataataaacaagtGAAGTACATGACAAATAGAAACatgaatagtaattttatgtgtacttctatgtttttaatgaatgaaagttTACAGCAGCAAAACAATTCTCACCAGACCCATAATgccaataatataaaaaagcatGACATATTTAATATAGCTTGTGAGAAAGGATGCAACTGTGAAACTACCAATACAATTTTTAGAACAGGGAATGGATTAATATTTTCTGCAGATAAAGCCAGTGCTACGAAACACTTTATGACTCCTTGTGGACCTCTACAGTTGACAGCTCAAGAATGTGGTGAATTCTTGTTGAAAAAGGCCACATTATCTAGTAATGTGATAGTTGATACAAATCCTGTAACGTCACAGCAAACATTAAATACAAGCACACCTACTCAAGCAAAAATTGAAGGACAAACACAGACTGCTTCTCAAACATTACCTACTGTTAATATTAATCTTAATGTTGGTGGGCACAAATATCGTGTTGATAAAGAGAGACCTTTTTCTTGTCAAGAGTGTGGGAAGTCTTTTCTTCTGAAACATCATTTAGTTACACATGCTCGTGTCCATACTGGTGAACGTCCTCATGTCTGTCCTGAATGTGGAAAAACGTTTGCTCATAAACATTGcctttcaacacatttgttaCTTCATACAAGTGATCGTCCTTACAAGTGCATGGAGTGTAAAAAGTCTTTCACTCTCAAACATCACCTTGTAACCCATGCTCGTGTGCATAACAGAGAACGACCATTTATATGTCAAGAATGTGGTCAAACCTTTCCTCAAAAGAGACATCTGGTCACACATACCAAGTTCCATTCTGGTGAACGACCGTATGTGTGTGAGGAATGTGGTGAATCGTTTTCACAGAAGGACCATCTAGTTATTCATTCACGCTTTCATGGAGGCCTTCATCCTTATGTATGTCCTGATTGTGGAAGTACATTTGCTCGAAAATTTGAGTTGGTTAACCATGGGCGATTGCATGGACGAGTTCCTCATTCTTGTGAAATCTGTGGTAAAGAATTCCTTCAAAAAAGAACATTGTTAGCACACACACGTATGCATACAGGAGAGGAGCGCCCATTTGTTTGTCAACATTGTGGTGAAACTTTTACCCGGAAAGGAGATCTTACTGAACATGCTAAATTGCATACGGGTGATAAACCTTTTGTTTGCAGGGAGTGTGGAAATTGTTTCTCTAGTCGAGAAGGCCTGGCTCTACATTATCGACTTCATGCTGGTGACAGAAACGTTGTAGCTGATCTCTGTGGTCTTGCATCTGCTTTACAGCAACCAGCTGCTCATTTCCTTTGTCCTCAACCTCAAACAGTGAATGCAGTTGTGAATAAAATGAATCAGATAGTAACAAATGCTGCAACTGTGGCAGGCACAATGGGACACAATATGCCTAAACCAAAACCATATGTCTGTCCTGATTGTGGGAAGTGCTTTACGCAAAGACATGGATTAGCGCAGCACAATAAACGTCATAGTGGTGGAACCTGCGATATTCGTCAGCATCCACATCAACAACCTCAGAGTCAACTGCAACAAGTTCCACCTCAGATTCAGCCCGCATCCCAACCTCAATCCCAGCTCACTCCTCCCTCTCAGATTCAATCTCAACTTGAGACACAAGTCCAGCTACGAGATGCAAAACAACCCTTTCAGGTGTTAATTTCAACTCCTGGGGAACCAATTGCATCTCCTGAGAAGTTTGAAGTTCTCATTCCAGCTACAGGAGAGTGA
Protein Sequence: MHFDSLRVVSEHLVERIKLEDTSFRDTVQNNSSCQMYSSTVTVPSSQNALTSASQCNISSNNQCISSSPTIKFQVEGTEGSNGAVISKDNCNNKQVKYMTNRNMNSNFMCTSMFLMNESLQQQNNSHQTHNANNIKKHDIFNIACEKGCNCETTNTIFRTGNGLIFSADKASATKHFMTPCGPLQLTAQECGEFLLKKATLSSNVIVDTNPVTSQQTLNTSTPTQAKIEGQTQTASQTLPTVNINLNVGGHKYRVDKERPFSCQECGKSFLLKHHLVTHARVHTGERPHVCPECGKTFAHKHCLSTHLLLHTSDRPYKCMECKKSFTLKHHLVTHARVHNRERPFICQECGQTFPQKRHLVTHTKFHSGERPYVCEECGESFSQKDHLVIHSRFHGGLHPYVCPDCGSTFARKFELVNHGRLHGRVPHSCEICGKEFLQKRTLLAHTRMHTGEERPFVCQHCGETFTRKGDLTEHAKLHTGDKPFVCRECGNCFSSREGLALHYRLHAGDRNVVADLCGLASALQQPAAHFLCPQPQTVNAVVNKMNQIVTNAATVAGTMGHNMPKPKPYVCPDCGKCFTQRHGLAQHNKRHSGGTCDIRQHPHQQPQSQLQQVPPQIQPASQPQSQLTPPSQIQSQLETQVQLRDAKQPFQVLISTPGEPIASPEKFEVLIPATGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -