Lko_22939-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01129566.1:264679-268757[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0062 0.29 11.2 0.3 1 23 316 339 316 339 0.94 2 14 5.2e-05 0.0024 17.8 1.0 1 23 362 385 362 385 0.96 3 14 0.0025 0.12 12.5 0.8 3 23 392 412 391 412 0.97 4 14 0.0011 0.054 13.6 4.9 1 23 418 440 418 440 0.98 5 14 6.8e-06 0.00032 20.5 0.6 2 23 447 468 446 468 0.96 6 14 1.1e-05 0.00049 20.0 0.5 3 23 476 496 475 496 0.98 7 14 4.7e-06 0.00022 21.1 1.5 2 23 503 524 502 524 0.96 8 14 3.5e-05 0.0016 18.3 0.7 1 23 530 552 530 552 0.98 9 14 3.7e-06 0.00018 21.4 0.5 1 23 558 580 558 580 0.98 10 14 0.071 3.3 7.9 1.0 1 23 595 617 595 617 0.96 11 14 0.00034 0.016 15.2 0.1 1 23 624 646 624 646 0.97 12 14 8.1e-05 0.0038 17.2 1.0 1 23 652 674 652 674 0.94 13 14 3e-05 0.0014 18.5 1.9 1 23 680 702 680 702 0.98 14 14 2.2e-06 0.0001 22.1 0.3 1 23 708 730 708 730 0.97
Sequence Information
- Coding Sequence
- atgagcTTTAGGCGATGTGCAGccaaaacttgttttaatttgcAGGGTTGTCGTCCTAACCTGAAATTTTTCCCATTCCCCAAAGATGAAGCAGCttGTAGGATATGGGCTGCACAGTGTGATCGCAGTGACCTTGCAGAGAAGCCTGTGGAGCAACTTTCCAAACTTTTGTTGTGTGCCGATCATTTTGAACCTCATTGGTTTTTAAACCcaaaatataaaactgtttttattagaACTGGACAACCCATTCCcactatatttcataataatttggcTGATTTTGTCCCTAAATCGTtgaaaaaacagtttaaattaaagtattcaagcGAAAATGAAAAAGATGAACCAAGTGAGGATGTTCCCAttcaaactattgaaaataattataccgTTCCAGAAGAAACTGTTGAGAATAAGTATACCACCATTTCAGAAGAAAGTTCTTTGGCACGGAAACATGGGTGTCATAAGATGTGTAGACTGTGTGCATGTTTGGTATATGAGGATAAGTTAGTATCGATATTAGATGATGAACCTGAACAAGACATTTTGTCAAAAATCAATCGCTTCTTGCCGGAAAAGGTTCTGTCAAATGATGGTTTACCTCATCATGTTTGTAGTTCTTGtattacaaaattgaatgaaTGCAACGATGCTGTTGATTCATTCATTGCTGCtgataaaaaGGTTTCCAATAATGATGATGCTACAAATGTGTTTGTGGTCACAAATAGCATCAACTTGAATTCTGCTTCTTTGCAAGAAACTACAAATTTGGACCCACTTTGTGAGGATGAATATTGTGAAGCATTAGGTGATGATCAAGAAAAGTACGCAGTGGAATTCTTGCAAAGTGAACAAATAAAGTGGCCTGATTGTGAAAACAATTCTGATGTGAAGGATTCTGTTAATATTGACTTAGATGATAATGCCGAGAGAGTGTATATGTGTTTGGTTTGTCGTAAAATTTTTAAGGAGAAGGACAAACTGTTAATGCATGAGATTTCCGAACATGCGGTTGAAGCAAAGAAAGAGGAGGAGTGTGTTACTACTATGAAGAAGTACAGAAAAAGAGAAATGCACAAATGTTCAGAGTGTGGAACTAGTTTTCCCGGATTGAAGCCATTGAAGCGCCATATTAGAGAGTATCACATTCCAGCTGAGAATATTTGCGAGTATTGTGGTGCTCATTATAAAATCAAAAGCCAGTTAGATGTTCATCGACGCCTCCACACAGACGAAAAGCCCTTCTCTTGCTCTGTGTGCAGGGAAACTTTCCATTTCAAAAAAGCCTTGAAAAGACATAAAAGAATTCACATTGAACCCAAATCTTTAACTTGTACTGTGTGTAACAAAACGTTCAGTAACAGAAGCGCTATGTGGAGACACGAACAGATCCATTCCACCAACAGAAGTGTTTTGTGTTACTTGTGTGGGAAGGTTCTTTCGAATTCTCAAAGTCTTAGAGTACACATGCGAACACACTCAACTGATAGGCCTTGTTCATGTCCCACTTGTGGCAAAACTTTCAGAGACAATATTTCTGTCAATAAGCATATGATAATGCACTCTGCAGTGAAGAATTTCAAGTGTGACATCTGTGGCAGAGCATTCTACAGCAAAGGTCTTGTTAAACAGCATAAGTTGAGTCATTCTGGAGTGAAACCTTTCAAATGTGAAGTGTGTGGGGCTGCATTCAACAGACTAGGCAATTTGAATCAGCATAAGAAGAAACACGTTCAAGATGGGACCTTGGAACATCTTCGTTCTAATCTCACTCACATGTGTGTCATTTGTGGCAAAATGATGAAATCAGAATTGACTCTGAAGTATCATTTGGCAAAACACACTGGTGAAAAGAAGCCGTTTGATTGCGAGGTGTGTGGGAAGCGTTTTGTGGCTGTAGATCCCTATCGAGTCCACATGCGCATACACACGGGTGAAAGGCCTTACGAGTGCAATCTCTGCGAAAAGACTTTCCGAAGTGCATTCACTCTGAAACAACACTCCGCCCTTCACAAAGATGAGTTTCCCTATCCCTGTACTTTCTGTGAACGGAGGTTTAAGCGGTTGCAGTCTCTCATTGTTCACAAaagaactcacactggcgagaagcctcACCCGTGTCCCATTTGTGGTCGTGGCTTTGCCCAGAAGGGCGACATGAtcaaacacacaaaaacacacaACAGAGATAGGAAACATGTGACCATGGAATTGGAACACATCACAGAATTAGTGTTGAGTGATCCTGAAATTACTAGTGAGTTTCTGATTGACATGCCCATTGTGGAAGTCGAGACAGAAATAAACTCGGATATACACGCACAAATGCAGTCTGAATTTCCTTCTCAAATTCAATCTGCTATTGATGATGAGATGAAATCTGACTTGCAGCCAGATCTAGGCTCTGAAATGCAAACTGGCATCCCGTCCGGAATGGAGTCTTGTATTCATATGGAAATCCAGCCCGACATCCATTCAGATATGAGTACTGATATTACAAATGGTATTTCATCTGATGACTTGCATTCTGAAATTCAAACAGTGATCGAAACAGAAATATATGgacagtaa
- Protein Sequence
- MSFRRCAAKTCFNLQGCRPNLKFFPFPKDEAACRIWAAQCDRSDLAEKPVEQLSKLLLCADHFEPHWFLNPKYKTVFIRTGQPIPTIFHNNLADFVPKSLKKQFKLKYSSENEKDEPSEDVPIQTIENNYTVPEETVENKYTTISEESSLARKHGCHKMCRLCACLVYEDKLVSILDDEPEQDILSKINRFLPEKVLSNDGLPHHVCSSCITKLNECNDAVDSFIAADKKVSNNDDATNVFVVTNSINLNSASLQETTNLDPLCEDEYCEALGDDQEKYAVEFLQSEQIKWPDCENNSDVKDSVNIDLDDNAERVYMCLVCRKIFKEKDKLLMHEISEHAVEAKKEEECVTTMKKYRKREMHKCSECGTSFPGLKPLKRHIREYHIPAENICEYCGAHYKIKSQLDVHRRLHTDEKPFSCSVCRETFHFKKALKRHKRIHIEPKSLTCTVCNKTFSNRSAMWRHEQIHSTNRSVLCYLCGKVLSNSQSLRVHMRTHSTDRPCSCPTCGKTFRDNISVNKHMIMHSAVKNFKCDICGRAFYSKGLVKQHKLSHSGVKPFKCEVCGAAFNRLGNLNQHKKKHVQDGTLEHLRSNLTHMCVICGKMMKSELTLKYHLAKHTGEKKPFDCEVCGKRFVAVDPYRVHMRIHTGERPYECNLCEKTFRSAFTLKQHSALHKDEFPYPCTFCERRFKRLQSLIVHKRTHTGEKPHPCPICGRGFAQKGDMIKHTKTHNRDRKHVTMELEHITELVLSDPEITSEFLIDMPIVEVETEINSDIHAQMQSEFPSQIQSAIDDEMKSDLQPDLGSEMQTGIPSGMESCIHMEIQPDIHSDMSTDITNGISSDDLHSEIQTVIETEIYGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872298;
- 90% Identity
- iTF_00872298;
- 80% Identity
- iTF_00872298;