Lko_09188-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01128241.1:645965-661447[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.66 31 4.9 2.9 3 23 571 592 570 592 0.94 2 15 0.00041 0.019 15.0 0.9 1 23 599 621 599 621 0.96 3 15 5.5e-06 0.00026 20.8 2.2 1 23 633 656 633 656 0.92 4 15 0.00029 0.014 15.4 0.6 1 23 662 684 662 684 0.98 5 15 4.6e-06 0.00022 21.1 3.5 1 23 690 712 690 712 0.96 6 15 2.6e-06 0.00012 21.9 1.4 3 23 723 743 721 743 0.97 7 15 0.00041 0.019 15.0 3.8 1 23 749 771 749 771 0.93 8 15 1.3e-06 6.3e-05 22.8 0.8 1 23 777 799 777 799 0.98 9 15 0.00072 0.034 14.2 0.1 1 23 805 827 805 827 0.98 10 15 2.4e-05 0.0011 18.8 0.2 1 23 850 872 850 872 0.99 11 15 6.7e-07 3.2e-05 23.7 0.5 1 23 878 901 878 901 0.97 12 15 7.5 3.5e+02 1.5 0.3 1 23 907 929 907 929 0.86 13 15 0.00062 0.029 14.4 0.6 1 23 935 957 935 957 0.98 14 15 8e-05 0.0038 17.2 0.8 2 23 964 985 963 985 0.94 15 15 6.5e-07 3.1e-05 23.8 0.7 1 23 991 1013 991 1013 0.98
Sequence Information
- Coding Sequence
- atgaaaatggcTTTGGTTTGTGCTGCAAAATCCTGTAAATCACACGAATTTGAAAATGACAATTccaatttagtgttttttcctTTTCCAGATGACGAAGAAACaTGCCGCACTTGGGTTCTGCGAACTGGGAGGCACGATTTGCTTTACAGAAGGGTGGAAGAAATCCACCTGACTGAATTTCTATGTGAACGCCACTTTGAAGACACCTGTTTAGATAGGTCAGGTCCTGTTGTTTTAAAGCCCAGAGCAACACCGACATTATTTGACGCTGACCGGAATTCGTTGCCAAAGGAAATTATGGAAGATAGCGAAGAaccAAGTTCTGTCAATCCTGATATTGTTGTCATACCATGTGTAATAATGAACGGTGTTAATACAGAAGTTATTAAATTTGATGGagaaaacattaaagaagaaaatatgaatagagatGAAATAGAACGTGAATTGCGGTTAATTCATGAAGGATGTTTACTTGATGACAACATCCTCTCGAGAGATTCTCACAgAATTGATGTCCATCGGCAAGTGAATAGTGAACTCCATACTACTGCAGATGTACGAACCATTTTGGAACCAGATACATTGGTTGTGGATAGTATTCACGCTGTTGAAACGTCGGAGTGGGGAGAAAACTCTGCATCCACTGTGACAAACGAGCTGTGTCGTGTGTGTGGTGCGGAGAATAATGAACTCATGCCAGTGTTTGGGGAGCAAAGTGTCCAACTTCAGATTATTGACAAAATTCAGTGGCATCTACCTATTGTGGTGGGTTTTCTTTGGTGTCTCGAGCATGCAATTAAAGAAGACGACAAATTACCTTTGAAAATCTGCACTTCTTGCGTGTCGCTACTCAATTCTTGGCATGACTTGGTGACTACATGCATGGAAACTGACGCTAGGCTTCGCAAATTGTTTAACGATGAGGAATTTGACCCTTCGACGAGCGTGTATTGTGACTTGAATCCTTCCACACCCGACAGAGCTGCGATGGATCCCACTGTGCGTCGACTGCATGACGTCCTCAGCTGTGACACTTTGGAATCTGAAGCAGACACTCAGAACACAGTGTCACAGTCCCTGGATGAACTCTCTCTGGAAACCACTGAAGATAGTATTGGACTGGAAATTGCAAAGGATCCCCAAGTTGCTGGAACCATTCATGGAAGCAGACTTCGTGTGAATGGTATCCGTTCAAGTGAACAATACTCAGAGGACAGTGTTCCTTCTACAAAAGATGTTCACCAAATTATTCATTGCATCAAGGAAGAGAATTATGAAGAGTCGAGTGATTCACTGTCGAAGGAAGAAACTAAAGAAGGGGGTGAGAAGATGAGTTTCGCTGTGAGTGAGTCTTTGGTTTCGTATCAGATCTCCAATGAAAAGTGtgcaaatatcaaaatagaaatatcgGAGGATTCCAGCGAATTTCAGATTGACGAAGGGAATGTGGAGGAAGAACCAGAGGCACAagggaatgaagaagaagaagaagaaggagatgaagaagaagaagaagaagaagaagaaggagatgaagaagaagaaggagatgaAGAAGAAGACGTGGAAGTGGACGTGGGGGAGGAAGAGAATGtctatgataatgataatgagaataataataataacaacaatgcgAGAGTAGTAAAGGGCAAAATAAACAGGAATGAAGAAGGTAGAAGAAAAATCGTGAGGGCAGTGTTCTGTGATTTATGTGGCTTCTCCTCCGACAAGAAAACAAAACTGCTTCAACACATTTGCGACAAACACTCTTCATCTGCGGCGTTGTTTACGTGCGAATACTGCGATAAAATGTTTACCAGTGAAGCTTTCAAGAAGGCTCATGAACGTGCTCATATAAATTTCCAACCGAAACCTTCCTCTGCGTGTTTTGTGTGCGAGTATTGTGGAAGGTCGTTCCGCACCAAAAAGACTTTGAAGGAGCACCACATTGCCATGCATAGTGATGACAAACCATACAAATGcgataaatgtgataaaaactaTGGCTCTCTTTCCAGTTTAGACATTCACAAGGCCACCCATTCCTCCGAAACCccttatttgtgtgatttgtgcGGCAAAACTTTCAAACATGTCAGTAATCTTAGAAGCCACAAACGATCTCATTTAGAGGACAGTGATAAGAACAGACAGATTTGCCCCAAGTGTGGGAAAGGCTTCAGGTCGAGGTTTCATCTCTCTGAGCATATGAACGTTCACAACGGCAACAGACCGTACACGTGTGAAGTGTGTGGGaagtgttttcataaaaaaatccaGTTGAGACAGCACGGATCTGCCCATTCTGGGACTCAACCTTACAATTGCCCCGTGTGCGGAGTGAAGTTCAATCGGAGAGGAAATATGACTCAGCACATGAAAAGACACACCCAAGAGCGTAAGTACACTTGTAGAGTGTGTGGCGCATCATTCCCTACTCTAGGAGCTGTGTTGAACCATAGGAAGAAACACTCGGATCTGGAAGTGCAGAAGAGCACACAACTGCCCACACCAGCGGAAGATCCGGACCAAGTGGCTTTCAAGTGCTCCATCTGCGGAAAGTTGCTTGCGAAGAAGGAGTCGCTGGCCATCCACATGCGGTCGCATACAGGGGAGAAGCTGTTTCCCTGTCCAGAATGCGGCAAACGTTTGTCCAACAAAGGTTCTCTGACGTATCACATGCGTTCTTTCCACACGGGGGAGCGTCCTCACGCTTGCCAATATTGCGGCGACGGCTTCTTGTCGAAGGAGGCTCGTCTAGTTCACGAGCGCATCCACACGGGAGAGAAACCTTTCGAATGTGTCACGTGTGGCATGGCCTTTCGCTGCTCCAGCAACTTGGCCCAACACGCGCGTGTGCACTCGGACGCGAGGCCTCACGCGTGTCTGGCATGCGGCAAGCGATTCCAACGCAAGGGCGCCTTGGACGTCCACATGCGCACGCACACGGGCGAACGCCCTTTCCCTTGTGACATCTGCGGCCGCGCCTTCACGCAGAAGAACGACATGCTGAAGCACCGACGCACGCACACGCACGAGAAGCCCTATCGCTGCGTGCATTGCCCTTGC
- Protein Sequence
- MKMALVCAAKSCKSHEFENDNSNLVFFPFPDDEETCRTWVLRTGRHDLLYRRVEEIHLTEFLCERHFEDTCLDRSGPVVLKPRATPTLFDADRNSLPKEIMEDSEEPSSVNPDIVVIPCVIMNGVNTEVIKFDGENIKEENMNRDEIERELRLIHEGCLLDDNILSRDSHRIDVHRQVNSELHTTADVRTILEPDTLVVDSIHAVETSEWGENSASTVTNELCRVCGAENNELMPVFGEQSVQLQIIDKIQWHLPIVVGFLWCLEHAIKEDDKLPLKICTSCVSLLNSWHDLVTTCMETDARLRKLFNDEEFDPSTSVYCDLNPSTPDRAAMDPTVRRLHDVLSCDTLESEADTQNTVSQSLDELSLETTEDSIGLEIAKDPQVAGTIHGSRLRVNGIRSSEQYSEDSVPSTKDVHQIIHCIKEENYEESSDSLSKEETKEGGEKMSFAVSESLVSYQISNEKCANIKIEISEDSSEFQIDEGNVEEEPEAQGNEEEEEEGDEEEEEEEEEGDEEEEGDEEEDVEVDVGEEENVYDNDNENNNNNNNARVVKGKINRNEEGRRKIVRAVFCDLCGFSSDKKTKLLQHICDKHSSSAALFTCEYCDKMFTSEAFKKAHERAHINFQPKPSSACFVCEYCGRSFRTKKTLKEHHIAMHSDDKPYKCDKCDKNYGSLSSLDIHKATHSSETPYLCDLCGKTFKHVSNLRSHKRSHLEDSDKNRQICPKCGKGFRSRFHLSEHMNVHNGNRPYTCEVCGKCFHKKIQLRQHGSAHSGTQPYNCPVCGVKFNRRGNMTQHMKRHTQERKYTCRVCGASFPTLGAVLNHRKKHSDLEVQKSTQLPTPAEDPDQVAFKCSICGKLLAKKESLAIHMRSHTGEKLFPCPECGKRLSNKGSLTYHMRSFHTGERPHACQYCGDGFLSKEARLVHERIHTGEKPFECVTCGMAFRCSSNLAQHARVHSDARPHACLACGKRFQRKGALDVHMRTHTGERPFPCDICGRAFTQKNDMLKHRRTHTHEKPYRCVHCPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872295;
- 90% Identity
- iTF_00872295;
- 80% Identity
- iTF_00872295;