Basic Information

Insect: Laupala kohalensis
Gene Symbol: -
Assembly: GCA_002313205.1
Location: NNCF01134317.1:13414-16692[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 8.4e-07 4e-05 23.4 0.8 1 23 13 35 13 35 0.97

2 18 0.00034 0.016 15.2 1.9 1 23 41 64 41 64 0.96

3 18 0.0022 0.1 12.7 3.6 2 23 197 218 196 218 0.97

4 18 2.4e-07 1.1e-05 25.1 1.5 1 23 224 246 224 246 0.99

5 18 0.018 0.85 9.8 0.6 3 23 284 305 283 305 0.97

6 18 0.00025 0.012 15.6 0.9 1 23 353 376 353 376 0.92

7 18 4.8e-06 0.00023 21.0 1.2 2 23 432 453 431 453 0.96

8 18 1.1e-05 0.00054 19.8 2.5 1 23 503 525 503 525 0.95

9 18 9.9e-05 0.0047 16.9 5.2 1 23 531 553 531 553 0.98

10 18 0.17 8.2 6.7 1.1 1 23 588 611 588 611 0.95

11 18 2.7e-06 0.00013 21.8 2.2 1 23 683 705 683 705 0.98

12 18 5.4e-05 0.0025 17.7 2.2 3 23 754 774 752 774 0.94

13 18 0.0027 0.13 12.4 6.0 1 23 780 802 780 802 0.98

14 18 0.0011 0.052 13.6 1.9 2 23 905 927 904 927 0.90

15 18 0.24 11 6.2 2.2 1 23 975 998 975 998 0.95

16 18 0.007 0.33 11.1 1.0 1 23 1004 1026 1004 1026 0.97

17 18 6.5e-05 0.0031 17.5 0.6 1 23 1032 1055 1032 1055 0.95

18 18 0.0025 0.12 12.5 0.8 1 19 1063 1081 1063 1086 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	8.4e-07	4e-05	23.4	0.8	1	23	13	35	13	35	0.97
2	18	0.00034	0.016	15.2	1.9	1	23	41	64	41	64	0.96
3	18	0.0022	0.1	12.7	3.6	2	23	197	218	196	218	0.97
4	18	2.4e-07	1.1e-05	25.1	1.5	1	23	224	246	224	246	0.99
5	18	0.018	0.85	9.8	0.6	3	23	284	305	283	305	0.97
6	18	0.00025	0.012	15.6	0.9	1	23	353	376	353	376	0.92
7	18	4.8e-06	0.00023	21.0	1.2	2	23	432	453	431	453	0.96
8	18	1.1e-05	0.00054	19.8	2.5	1	23	503	525	503	525	0.95
9	18	9.9e-05	0.0047	16.9	5.2	1	23	531	553	531	553	0.98
10	18	0.17	8.2	6.7	1.1	1	23	588	611	588	611	0.95
11	18	2.7e-06	0.00013	21.8	2.2	1	23	683	705	683	705	0.98
12	18	5.4e-05	0.0025	17.7	2.2	3	23	754	774	752	774	0.94
13	18	0.0027	0.13	12.4	6.0	1	23	780	802	780	802	0.98
14	18	0.0011	0.052	13.6	1.9	2	23	905	927	904	927	0.90
15	18	0.24	11	6.2	2.2	1	23	975	998	975	998	0.95
16	18	0.007	0.33	11.1	1.0	1	23	1004	1026	1004	1026	0.97
17	18	6.5e-05	0.0031	17.5	0.6	1	23	1032	1055	1032	1055	0.95
18	18	0.0025	0.12	12.5	0.8	1	19	1063	1081	1063	1086	0.91

Sequence Information

Coding Sequence: ATGACACCAGACAGCCTCCCTAATGTCCAGAATTGTTTCAATTGTAAAGTGTGTGGAAAAGTGTTCTCTACTGCAGATAGTCTAAAGCAACATAGTAACTCACATATAAAAGGTAAATCCTTCTGTTGTTCTCTATGTGGAAGAACCTATTCGTCTGATGGCTCCCTTCGTGTGCATAGAAACAGAGTTCACAAAGCTAAGAAGCCAGTTTCAGGGAAAGTGGCAAAAGTGACGATTTCATCTACTTCCTTCTACAAACCTAAAACTGTTcttcagaaagcaataaaatcTTTGGGTGTTAAtaacaatgtgaaaaaaatatcatcCTATGGGATTTATGAACATCAGTTGGGCCAAAGAAAGGTACATTCATCTGATGGAGCTTGTTCTTCACTAGGTTCTCTACATCAACAAAGTACTAACAAAAGTAAGATTTCTCTCCTCCGTAAGGAACATTTTGAGAATGATACCATTAAAGTAGCAAGAGCTATCGGAGATGGAAGGAAAGTTGCTGGTGGTAGGGGCGAAGAAAAAGTAGGTTTGCCTGAAAATCTAAGCATGAAAGTTCATGCTAAAAAGGGGTCTTCAGTCTGTAATTGGTGTGGGAAAAAGTTCCTGAAAAGTCATCATCTTAAGGTACATGAACGCATACACACTGGCGAGACACCTTATCGCTGCAGTGTTTGCGGTGAAGCCTTCCGTTATTCCCAAAAATTGCAAAGGCATATGAAAACCCATGACTGTGAGAATTCTTTGATTGGTAAGGTTGATGGGAAAGATGGCTTCTCTTCTAGTTCTCTTGACCAGCAGGAGGGTCTTCGTATATCTGGAAGGAATAATTCTGTTCTTTGTAATTTGTGTGGATCATATTACGTTACATCTGCTGTCCTGAGGAGGCACATCAGGCATGTCCATAAACACGGAGAATCCTGTAGGTGTGAGGTCTGTGAAGAAGCATTTCCTCCAAAACTGTTGCCTGCCTCAAAGCCCCAAGATTACTCGAGAAAACTCCCTGTATCAACACATAAGGTACCGGACAGAGGAAGAAgggaattattttcttgttacttgTGTCCCCAGACATTTTCTTCATCTTATTCTCTTGAGGaacatattacattttcacataatatCCCTCAGTCCATCAGGAAAGTTTCTCCACACAGTTCCAGTACTTCATTGTCTGTCAAACTGGATGACTCCACTTCTGTGAAAGATCACAGCTGCAGTACAAGTTCTATTTCTTTAAAGTTGATGTCGGAAGAACAAAACATAGCAGCTGGAGGGTCTATCCACTGTGATGTTTGTGGAAAATCTTTTTCTTCGTTTGGCTATCTCAAAGTTCACAGACGCATTCACTCCACATCCTTGCCTTTAAGTATGAAGTACAATGCTTTAGCTTGGTCgaagaaatttatgaaagataGAAGGGAAGTTTCGGGTGAAGTGAGCGCTAGGAATTTCACTTCTACTGGCAATCTTCATTTCTATGCTAGAAAAAATTCGTACCTCTGTAGTACGTGTGGGAAAACATTCTATAGAAAGGAACATCTTCAACAACATGAGCTCATTCACTCGGGCGAGACTGCTTATTGCTGCAGTGTGTGTGGGAAAGGTTTCCGTTATATGAGaacttttaaaaatcatatgaaaaccCATGAGGGAGAGAATTCTGTCAGTCGTAAGGTAGATGGAAAGGAGTCCTCTTCATCTAGTTCCCTTGACCGGCCAAGTCTTCTTGTTTCTGAAGATAAGAAGTCTTTTTCTTGTAAGTTGTGTGGATCAAATTATCTTTCATCTAGGGGTCTGAAGAAGCACATTGTGCGGAAACATAAGCATGCAAAATCCTGTAGATGTCAGGTCTGCATTGTTGCACATCCTTCACCAGCAACAGCAACCTCATTGTCTGTCGAGAAGGGCGAATCTACTTTTGAGAATGGTATCCAGAAGGAATTGGTTGTGTTGAAAGCTGGAAACCGAAGGAGAAAGTCTCCTTttgtgccgccgccgccgctgaaAGAACAGAACAATGCAACTGGGGGCCCTTTTCACTGCGAAGTTTGTGgaaaatctttttcttcatttggCTATTTGAAGGTTCACAGGCGCATCCACTCCACATCCTTACCTTTAAGCATGAAATATACTGCTCTGTCCCGATCAAGAAATTTTACGATGGGTAGAAGAGAAGCTTCTGGTGGAGcgagtaaaaagaattttcttcctTTGAAAGGCCATGATGGAGAAGATTCTCACTTGTGCGAAAAGTGTGGGAAAGTGTTTGGGAGAAGTGCTCATCTTAGTCGTCATGAATCAGTTCATACTGGTGTGACACCTTTCCGCTGCAGTACGTGTGGTGCAGCCTTCCATCATAGTAAATCTTTAAAAATGCACACAAAGAAGCATTGtgagaattatttattgtatagaaaAGAGTCATCTTCTACTGTTCTTGACCAGCAGAGCCTTATTGTTCCTCAAGAGCAGAAGTCCTTTTCTTGTATCCTGTGCGGATCAAATTACCTTTCAGGCAGTGCTTTGAAGAAACACATCACACAGGTCCACGAGCATGCCAAATCCTGTAGATGCCAGGTGTGCATTGTTGCATATGCTTCACAAACAATAGCTACCCCATTGCCTGCCAAGCCCAAAGACTCCAAATTTCGAGACAGCTCAAGTAAGCTATCTAACCGAGGAAGAAGGGAATTGTGTTCTTGCAGTTTGTGTTCTCAAACattttcatcatcatcttctcTCGAGGAACATGTTACACTTTCACACAATACCCCTAAGTCCTTCACAAAAGGTTTACCTCATAGTTCAAGTAAACGTCACGATGTGTTAGAGATTGAAGAACCTTTGAGCTCTGATTTGCGTGTTGCGGAGCTTCCTTCCACGCCTGTGGCAATGAAGAAGTTAACTTTTCGTTGTGACTTGTGCAGCGAGACATTTGAGTTGGGTAACTCCCTGAGTCAGCATTACAAACACAGTCATAACCGGACTAAAACTTTTCATTGCGATATGTGTGGGAAGGGGTTCGGAGGTTTTGAGTACTATTCAGTGCATCTACGATTGCATATGGGAGAGAGGCCCTTTTGTTGCGAGGTGTGTGGAGGATCATTCGCTTCTAAATCCAACCTCTCTGCCCACAAAATTCGAGCTCATAGTAGTGTAGACAAGAAGCCGTTTGTCTGTGCCGTGTGTGGAGAAGCCTTTTCTGAAAAAAGCGATTTCAAAGAGCACTGCATGGAAAATCACAGTGATATCTTTCTTGCCTAA
Protein Sequence: MTPDSLPNVQNCFNCKVCGKVFSTADSLKQHSNSHIKGKSFCCSLCGRTYSSDGSLRVHRNRVHKAKKPVSGKVAKVTISSTSFYKPKTVLQKAIKSLGVNNNVKKISSYGIYEHQLGQRKVHSSDGACSSLGSLHQQSTNKSKISLLRKEHFENDTIKVARAIGDGRKVAGGRGEEKVGLPENLSMKVHAKKGSSVCNWCGKKFLKSHHLKVHERIHTGETPYRCSVCGEAFRYSQKLQRHMKTHDCENSLIGKVDGKDGFSSSSLDQQEGLRISGRNNSVLCNLCGSYYVTSAVLRRHIRHVHKHGESCRCEVCEEAFPPKLLPASKPQDYSRKLPVSTHKVPDRGRRELFSCYLCPQTFSSSYSLEEHITFSHNIPQSIRKVSPHSSSTSLSVKLDDSTSVKDHSCSTSSISLKLMSEEQNIAAGGSIHCDVCGKSFSSFGYLKVHRRIHSTSLPLSMKYNALAWSKKFMKDRREVSGEVSARNFTSTGNLHFYARKNSYLCSTCGKTFYRKEHLQQHELIHSGETAYCCSVCGKGFRYMRTFKNHMKTHEGENSVSRKVDGKESSSSSSLDRPSLLVSEDKKSFSCKLCGSNYLSSRGLKKHIVRKHKHAKSCRCQVCIVAHPSPATATSLSVEKGESTFENGIQKELVVLKAGNRRRKSPFVPPPPLKEQNNATGGPFHCEVCGKSFSSFGYLKVHRRIHSTSLPLSMKYTALSRSRNFTMGRREASGGASKKNFLPLKGHDGEDSHLCEKCGKVFGRSAHLSRHESVHTGVTPFRCSTCGAAFHHSKSLKMHTKKHCENYLLYRKESSSTVLDQQSLIVPQEQKSFSCILCGSNYLSGSALKKHITQVHEHAKSCRCQVCIVAYASQTIATPLPAKPKDSKFRDSSSKLSNRGRRELCSCSLCSQTFSSSSSLEEHVTLSHNTPKSFTKGLPHSSSKRHDVLEIEEPLSSDLRVAELPSTPVAMKKLTFRCDLCSETFELGNSLSQHYKHSHNRTKTFHCDMCGKGFGGFEYYSVHLRLHMGERPFCCEVCGGSFASKSNLSAHKIRAHSSVDKKPFVCAVCGEAFSEKSDFKEHCMENHSDIFLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -