Lko_12592-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01130566.1:563881-624504[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.21 10 6.4 0.6 2 23 45 66 44 66 0.96 2 20 3.4e-05 0.0016 18.4 0.9 1 23 98 120 98 120 0.99 3 20 1.4 66 3.8 0.3 1 9 126 134 126 135 0.90 4 20 0.12 5.7 7.2 3.1 2 23 210 231 209 231 0.96 5 20 0.13 6.1 7.1 3.3 1 23 237 259 237 259 0.96 6 20 4e-06 0.00019 21.3 1.9 1 23 265 287 265 287 0.98 7 20 0.00049 0.023 14.7 1.1 1 23 362 384 362 384 0.97 8 20 0.02 0.94 9.6 0.4 2 23 390 410 389 410 0.96 9 20 2.9e-05 0.0014 18.6 7.7 1 23 416 438 416 438 0.98 10 20 0.0062 0.29 11.2 1.1 1 23 444 466 444 466 0.98 11 20 1.4e-06 6.5e-05 22.7 1.9 1 23 472 494 472 494 0.98 12 20 0.00023 0.011 15.7 0.8 3 23 500 521 498 521 0.95 13 20 9.9e-08 4.7e-06 26.3 1.2 1 23 527 549 527 549 0.99 14 20 0.00093 0.044 13.8 0.1 1 23 560 582 560 582 0.90 15 20 0.027 1.2 9.3 0.1 2 23 591 611 590 611 0.95 16 20 0.0035 0.16 12.0 2.6 1 23 616 638 616 638 0.98 17 20 6.8e-05 0.0032 17.4 0.5 2 23 645 666 644 666 0.97 18 20 4.9e-05 0.0023 17.9 3.1 1 23 672 694 672 694 0.98 19 20 0.025 1.2 9.3 1.9 5 23 697 716 696 716 0.94 20 20 7.8e-05 0.0037 17.2 0.3 2 23 722 743 721 743 0.96
Sequence Information
- Coding Sequence
- ATGTATATTGCGAGGCAAATTGTTGATCCTCTGAGTCTGGATAGATGGAACGTTAGAACAGAACAATCGAATGAAGAGACGACGCATAGTGACAACGAAAGAAGTCAGGAAATTCAAGGGTCAGGGAGAACTTATTGTGACCTTTGTGGCAACCATTACGAATCTGACGAAGTACTTCAAGAGCATTTGAAGAGTCATAAAGTAGGCAAGGAACATAAATGTGAAGGTTGCTATTCGTTCTCGGAATTACGGTCACATAAGGCGACTCACACTAGTGGAAATGTGAAACCGTATAAATGTGAAACATGTCTTAAATCATTTTTGAGTAGTAGTTATTTAGCGGCACACATGAGATCACATGATTCTAATGATAAGCATGTATGCGAGATTTGCGGTAAAACGTCTTGGACTGATCTGTGCGAAAGACGAACTGACGAGTCAAGAAGCAAAATTACTTTTGCCCCCAAAAAGTCAAGTCAATCTGAAAGGGGAACTGAAACAAAACGACGGTACATTAAGTCGGGTATATATtcgaagaagaggaagaaactaGAAGATGGAGATTCCACATTTATGGGCAAAGATATAAGAGATCTCGAACAGGAAATGTCATCGAAACGATTTTTAACGTGTGGCGAGTGTTGTTATACTTTCACTTCATTTAATGAATTCGATCAACATATGAAAATGCATGGAGCGGGAAAAATCTTCAGTTGCAATGCAtgtgaaaaagtatttctttcGTGTAAAAAGCTGAAGCGACATGTATTTGTTCACTCTACAGAGCGCCCTTATTCGTGTGAAATATGCAAGAAAACATTTAAACGACCGTACGATATAACAGTTCATAAGAGGAAACACAGCGGAGAAAACCGTCTTAAATGCGATAAACACACAGAAGAAGACACGTCTGTGAATTGGAACATCACTGTCACACCAGGGTCCTCGACAAAAGAGGATCACAGCAAATCTCACATTGAAGAAGAGTCTACAAAAGATAGGAAAACTAGTATATCGGATTCGAATTGTAAATTTTCTAGTTTGAGTGATAATACAGTTCTTGGGAGCGAATCTAAAGATTTGCATAAATGCGACGTTTGCGGAAAGAACTTTGGAAAGAAACCATTTTTGCTGTCCCATCTAAGCGTTCATAAAACTGAAGATTTATCGTGTGATGTGTGTGGATTTAAAGCAGACTCAAAAACTCTAAAAACTCACATGTTGACTCATGATACTGAGCGACCTTTCAAATGCAATATTTGtggaaaaacatttaaacattcaaaacatCGAAAATCGCATCTTAAAATTCACGAATCTGAAAATAAGTTTGAATGTGACATGTGCGATTTTAAAACTACTTGGAAGAGTAGTCTCAACAATCATGTCAAGTCCCATAATCAGGACCTTCCTTTTTACTGTGAAATTTGTTTGAAGAGATTTACTCAAAAGGGTTATTTAACTGCTCATATGAAGAAACATAATGGTGAATTTGGTTGTAAAATTTGTGGTAAAATGTACTCATCCAAGTTCTCCTTGATAGAACATAATAATTCTCGCCACGACTCGAAGAAACCCTTCACATGTAAATTATGTGGAAAGTCTTTTCCGTATAAATCTTCTTTGCGCGTCCATGCGAGGACGCACATAGGAGAAGCTGATGTGAAATGCCAGCTATATTTATGTGACATATGTGGGAAGGAATTGAAGAGTAATGAAAGTCTTCGCGTTCATAAAGTGGGCCATTCCGGAGAGAAACCCGAAATACTGATGTGTAGGGTTTGTGGAGAACGATTTTCTCCAAGAGATATAGAAGCTCatagaaaaattcataatatgaaACCATATCCGTGCCTTTACTGCGATTCAAAGTTCAATACATGCATGAAATTGAGACTGCATATGGCCAGTCATAAAGGACAAGAAACACTTAAATGCGATGTATGTAATAGTGAATTCGTGtctaaaaaaagtttaataagaCATATGGAGTCACACAGTGAGTTACGGCTGTATGAATGTGACATATGTAAAAGAAGATTTAAACGCCCTCATGAAGtaaaaaaacatagtaaaatCCACACAGCAATATGTCACAAAATGTTCAGAAGTCAAACGTTTGTCACTAACCACATGAAGTTCACTCACGGTGGGGAGAAATTGATTTGTAATTATTGTGGGAAACTTCTTTCAAGTCCCAATACTTTACGGATTCATCTCCGGAAACATACGGGAGACAGATGTCGGGTttatactatttttaaatatattttaacagtatttaaggttttttctctctcttggtCAGAGTCATCTTCCCTGGAAATTCGTCACTACAAgttgtttcaaattatATCGAATATTAGAAATACTTCCTTTCTTCGCGCTTATTGTACGAAATTGAAACGTTCatttcacttaattattttattaaaaatttgttttacatcattttttaTTCGTTTGTTGaaattcactggttcttctctAAGGACAATGTACAAttctaaaagaaagaaagacaatttaaatttttcgtaa
- Protein Sequence
- MYIARQIVDPLSLDRWNVRTEQSNEETTHSDNERSQEIQGSGRTYCDLCGNHYESDEVLQEHLKSHKVGKEHKCEGCYSFSELRSHKATHTSGNVKPYKCETCLKSFLSSSYLAAHMRSHDSNDKHVCEICGKTSWTDLCERRTDESRSKITFAPKKSSQSERGTETKRRYIKSGIYSKKRKKLEDGDSTFMGKDIRDLEQEMSSKRFLTCGECCYTFTSFNEFDQHMKMHGAGKIFSCNACEKVFLSCKKLKRHVFVHSTERPYSCEICKKTFKRPYDITVHKRKHSGENRLKCDKHTEEDTSVNWNITVTPGSSTKEDHSKSHIEEESTKDRKTSISDSNCKFSSLSDNTVLGSESKDLHKCDVCGKNFGKKPFLLSHLSVHKTEDLSCDVCGFKADSKTLKTHMLTHDTERPFKCNICGKTFKHSKHRKSHLKIHESENKFECDMCDFKTTWKSSLNNHVKSHNQDLPFYCEICLKRFTQKGYLTAHMKKHNGEFGCKICGKMYSSKFSLIEHNNSRHDSKKPFTCKLCGKSFPYKSSLRVHARTHIGEADVKCQLYLCDICGKELKSNESLRVHKVGHSGEKPEILMCRVCGERFSPRDIEAHRKIHNMKPYPCLYCDSKFNTCMKLRLHMASHKGQETLKCDVCNSEFVSKKSLIRHMESHSELRLYECDICKRRFKRPHEVKKHSKIHTAICHKMFRSQTFVTNHMKFTHGGEKLICNYCGKLLSSPNTLRIHLRKHTGDRCRVYTIFKYILTVFKVFSLSWSESSSLEIRHYKLFQIISNIRNTSFLRAYCTKLKRSFHLIILLKICFTSFFIRLLKFTGSSLRTMYNSKRKKDNLNFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -