Basic Information

Insect: Laupala kohalensis
Gene Symbol: -
Assembly: GCA_002313205.1
Location: NNCF01127602.1:62320-120264[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0001 0.0048 16.9 0.4 3 23 356 376 354 376 0.96

2 15 0.031 1.5 9.0 3.8 1 23 393 415 393 415 0.96

3 15 0.0084 0.4 10.8 4.1 1 23 421 443 421 443 0.97

4 15 4.9e-05 0.0023 17.8 0.5 1 23 449 471 449 471 0.98

5 15 2.1e-05 0.00098 19.0 7.3 1 23 504 526 504 526 0.98

6 15 2.4e-05 0.0011 18.8 0.6 1 21 532 552 532 553 0.96

7 15 5.3e-05 0.0025 17.7 6.0 2 23 574 595 574 595 0.98

8 15 0.031 1.5 9.0 0.1 1 19 598 616 598 618 0.95

9 15 1.3e-07 6.2e-06 25.9 1.1 1 23 622 644 622 644 0.98

10 15 1.5e-06 6.9e-05 22.7 1.4 1 23 650 672 650 672 0.98

11 15 6.8e-06 0.00032 20.6 6.2 1 23 678 700 678 700 0.98

12 15 2.5e-07 1.2e-05 25.1 0.4 1 23 706 728 706 728 0.95

13 15 0.00039 0.018 15.0 4.6 1 20 734 753 734 756 0.95

14 15 7.5e-06 0.00035 20.4 4.7 1 23 762 784 762 784 0.98

15 15 0.00093 0.044 13.8 3.3 1 23 790 812 790 812 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0001	0.0048	16.9	0.4	3	23	356	376	354	376	0.96
2	15	0.031	1.5	9.0	3.8	1	23	393	415	393	415	0.96
3	15	0.0084	0.4	10.8	4.1	1	23	421	443	421	443	0.97
4	15	4.9e-05	0.0023	17.8	0.5	1	23	449	471	449	471	0.98
5	15	2.1e-05	0.00098	19.0	7.3	1	23	504	526	504	526	0.98
6	15	2.4e-05	0.0011	18.8	0.6	1	21	532	552	532	553	0.96
7	15	5.3e-05	0.0025	17.7	6.0	2	23	574	595	574	595	0.98
8	15	0.031	1.5	9.0	0.1	1	19	598	616	598	618	0.95
9	15	1.3e-07	6.2e-06	25.9	1.1	1	23	622	644	622	644	0.98
10	15	1.5e-06	6.9e-05	22.7	1.4	1	23	650	672	650	672	0.98
11	15	6.8e-06	0.00032	20.6	6.2	1	23	678	700	678	700	0.98
12	15	2.5e-07	1.2e-05	25.1	0.4	1	23	706	728	706	728	0.95
13	15	0.00039	0.018	15.0	4.6	1	20	734	753	734	756	0.95
14	15	7.5e-06	0.00035	20.4	4.7	1	23	762	784	762	784	0.98
15	15	0.00093	0.044	13.8	3.3	1	23	790	812	790	812	0.95

Sequence Information

Coding Sequence: ATGTTTCACGCAATTGAGGGCAAGACAGGTCCCAAGATCCAACTAATAAAAACAGAGGAAGGCGATGGGATAGAGGAGGATGCCAAAAAATCTGAAGCATTTACCTCTTACTACAGTAGCAGAGCGGGAAACGCGGTCGGCTGGCCTTTTACATTAACGAGGCTCATTATGGATCACCAGGGAATAACAAGAGTTCCCTTGAAGCAAGTTAATTTCAAGGACATGAAACACATTATGGATTTTATCTATTATGGTGAAGTTGGTGTACCATTGAGTGATCTGGCATCTTTAATGAAAGCTGCCGAATTCTTGCAGATAACTTCGTTGACCTGCCTTTCTTCCAAGGTTGCTGGTTTATTTACCTGTAATGTAACTTGTGAGCCAAGTATGAATAACGGAGGAATCTTACTGAACAAACCAAATGCAACATTTGACAgtagtggaagtaatgacagtaTTGTGAAAAGAACAGAAGACTTAGAAATGAAGTTTGAATCCATCTGTGATGATtctgaacatgatattaaaccaGAGAAATTGTTCATGTCTGTTGTGAACTCTGAGACTTGTGAAACAGAAGAATTGGATATTATTGAGAAAGATGAACAAATGGAGGATAGTTTGCTTGTAAGTAAAGCGAAGCTGCAAGACGAATGGGTTTCTGTGCAAAGAATATCTTTACAAGGAATGAACCCTTTCCATCAAATGAAAATTGACAATGAAAATTTAGcttctgaagaaaaaatgtattcttttgagGGAACTGTATTGGATAATTCGGTTTTTGTAAAACATGAGATGAAACATGCTGAAGAAACATATGAGGATGTGAAACTGGATCCTTTTAATATTGTATGGAAATCAGATGATTCACTGGAAGCAGGGATTGAAAATTCTAGTTCAGGTTCCCCTGAAGGTAGTGCATCAAATGAGTCTTGCTTACAAGTGAAATCAGAGGATGAGCAAACCACAGATCACAAGGGAAATTCCTCCTCAGTCAGTGCAGCCATACTGAAAGGAAAACGTCATTCCAAGAATGTGGATTCCAGCAAAAGTATTCATTTATGTGAGCTGTGTGGTTTAATTTTTGAGACTTCCAAACTTCTTAATGTTCACCTGCGAGTTCACAATGGAGAGAAAGTTATACAGATGAAGAGAAGTGCATACAAAAAGACCTATTTATGTCATTTGTGTTCAGCAATATATCGCTCTGCTTGCAGCTTCCAGATTCACCTTCGAAGACATGAAGGGGAAAAGCCGTTCTCCTGTCATTTTTGTGAATCTGCTTTCAtatcaaaaaagtatttgaaagtgCATCTTTTCAAACACACTAAAGATTATCCGTTTATATGTTCAGTGTGTGGTTCTGGTTTTGCTTTGAAAAGCTATTTGAAAAAACACCAAAAGGTTCATTCAAATGAGAAACCTTTTTCGTGTACATTGTGTGCCAAATCTTTCAAATGTAAAACGTCTTGTGAGATACATATTTTGAATCATTCGGGAGAGCAGTTCTCTTGTCATATATGTCAGGGAAAGTTCAAACACAAGTCTACTTTAAGGAGTCATATGCGAACCCACACAGGCGAGAGGCCTTACATGTGTAAATTTTGCGGAGAATCGTTCAATCACTCAAGTGTCCTCTGGAGACATCTCCGGGAGGATAAGAGAAGAGAAACGAAGTCAAGGTACCGGAAGAAACGCGTTGTTTCCGATAAAAGGAAATGCGTACACTGTGGAAAATCGTTTTCGTATTTTAAATCTCTTTGCGTCCACCTTCGCACTCACAACGTCTTTCCATGTTCTGTTTGCGAACTGTCTTTCGATTCGCTGTCCGCCTTCGAGGAACATAGTACTGATTGCTTCTACCGGTGCGAAATATGCGGGAAATCGTTGAAGCAGAAATTTAATCTACAAGAGCATATGCGTCTCCATTCGGGAGACAAGCCGTACAGCTGTGAAAAGTGCGGTAAACGATTTCCTACCAATAGCGCGTTTAAAACTCATAGTCGTGTACATTCGGGCGAGAAGCCGTACCACTGCGAAATATGCGGAAAGAACTTTAATCAACGCTGTAGTCTGAAGCAGCATCTACGCACACACATTAATATGAGACCGTTTGAATGCGAGTACTGTGGAAAGGGTTACAATGACAAGTCCAATCTAAGGCGACATCTGGACGGTCATACAGGGGAGAAACTGTTTCATTGTGATGTGTGTCAAGTGTCATTTAGTACCAAGGGCAGTTTGAGGAGACACATGTATTGCCATATGGACGATAAGCCCTTCAGCTGCGAGGAGTGTGATAGAACATTCACACAATTGGTCCATCTCCAATACCACATGCATACGCACACTGGTGAAAGGCCATACAGGTGTAAAACTTGTGGAAGGACTTATCTTCAGTCAAGTCATCTTAAACAACATGAAGTTAGTCACAAAAATAAAGCATCAAAATAA
Protein Sequence: MFHAIEGKTGPKIQLIKTEEGDGIEEDAKKSEAFTSYYSSRAGNAVGWPFTLTRLIMDHQGITRVPLKQVNFKDMKHIMDFIYYGEVGVPLSDLASLMKAAEFLQITSLTCLSSKVAGLFTCNVTCEPSMNNGGILLNKPNATFDSSGSNDSIVKRTEDLEMKFESICDDSEHDIKPEKLFMSVVNSETCETEELDIIEKDEQMEDSLLVSKAKLQDEWVSVQRISLQGMNPFHQMKIDNENLASEEKMYSFEGTVLDNSVFVKHEMKHAEETYEDVKLDPFNIVWKSDDSLEAGIENSSSGSPEGSASNESCLQVKSEDEQTTDHKGNSSSVSAAILKGKRHSKNVDSSKSIHLCELCGLIFETSKLLNVHLRVHNGEKVIQMKRSAYKKTYLCHLCSAIYRSACSFQIHLRRHEGEKPFSCHFCESAFISKKYLKVHLFKHTKDYPFICSVCGSGFALKSYLKKHQKVHSNEKPFSCTLCAKSFKCKTSCEIHILNHSGEQFSCHICQGKFKHKSTLRSHMRTHTGERPYMCKFCGESFNHSSVLWRHLREDKRRETKSRYRKKRVVSDKRKCVHCGKSFSYFKSLCVHLRTHNVFPCSVCELSFDSLSAFEEHSTDCFYRCEICGKSLKQKFNLQEHMRLHSGDKPYSCEKCGKRFPTNSAFKTHSRVHSGEKPYHCEICGKNFNQRCSLKQHLRTHINMRPFECEYCGKGYNDKSNLRRHLDGHTGEKLFHCDVCQVSFSTKGSLRRHMYCHMDDKPFSCEECDRTFTQLVHLQYHMHTHTGERPYRCKTCGRTYLQSSHLKQHEVSHKNKASK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00872419;
90% Identity: iTF_00872419;
80% Identity: iTF_00872419;