Basic Information

Insect: Laupala kohalensis
Gene Symbol: -
Assembly: GCA_002313205.1
Location: NNCF01129185.1:147088-168852[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.4e-05 0.00064 19.6 1.0 1 23 444 466 444 466 0.96

2 18 0.068 3.2 8.0 3.7 1 19 472 490 472 494 0.91

3 18 1.2e-05 0.00055 19.8 0.7 1 23 500 522 500 522 0.99

4 18 3e-05 0.0014 18.5 3.7 1 21 528 548 528 550 0.95

5 18 2.8e-05 0.0013 18.6 4.6 1 23 556 578 556 578 0.99

6 18 3.8e-05 0.0018 18.2 5.1 1 23 584 606 584 606 0.96

7 18 1.4e-06 6.5e-05 22.7 3.9 1 23 612 634 612 634 0.96

8 18 1.1e-07 5e-06 26.3 2.7 1 23 640 662 640 662 0.98

9 18 7.8e-05 0.0037 17.2 6.7 1 23 668 690 668 690 0.97

10 18 4.5e-05 0.0021 18.0 5.8 1 23 696 718 696 718 0.97

11 18 6.4e-07 3e-05 23.8 2.9 1 23 724 746 724 746 0.98

12 18 9.5e-06 0.00045 20.1 7.8 1 23 752 774 752 774 0.98

13 18 3e-05 0.0014 18.5 9.1 1 23 780 802 780 802 0.98

14 18 9.6e-06 0.00045 20.1 7.7 1 23 808 830 808 830 0.98

15 18 0.0011 0.052 13.6 8.8 1 21 836 856 836 858 0.94

16 18 0.0001 0.0049 16.8 0.4 1 23 864 886 864 886 0.98

17 18 0.034 1.6 8.9 4.5 1 23 896 918 896 918 0.98

18 18 5.6e-07 2.6e-05 24.0 1.3 1 23 924 946 924 946 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.4e-05	0.00064	19.6	1.0	1	23	444	466	444	466	0.96
2	18	0.068	3.2	8.0	3.7	1	19	472	490	472	494	0.91
3	18	1.2e-05	0.00055	19.8	0.7	1	23	500	522	500	522	0.99
4	18	3e-05	0.0014	18.5	3.7	1	21	528	548	528	550	0.95
5	18	2.8e-05	0.0013	18.6	4.6	1	23	556	578	556	578	0.99
6	18	3.8e-05	0.0018	18.2	5.1	1	23	584	606	584	606	0.96
7	18	1.4e-06	6.5e-05	22.7	3.9	1	23	612	634	612	634	0.96
8	18	1.1e-07	5e-06	26.3	2.7	1	23	640	662	640	662	0.98
9	18	7.8e-05	0.0037	17.2	6.7	1	23	668	690	668	690	0.97
10	18	4.5e-05	0.0021	18.0	5.8	1	23	696	718	696	718	0.97
11	18	6.4e-07	3e-05	23.8	2.9	1	23	724	746	724	746	0.98
12	18	9.5e-06	0.00045	20.1	7.8	1	23	752	774	752	774	0.98
13	18	3e-05	0.0014	18.5	9.1	1	23	780	802	780	802	0.98
14	18	9.6e-06	0.00045	20.1	7.7	1	23	808	830	808	830	0.98
15	18	0.0011	0.052	13.6	8.8	1	21	836	856	836	858	0.94
16	18	0.0001	0.0049	16.8	0.4	1	23	864	886	864	886	0.98
17	18	0.034	1.6	8.9	4.5	1	23	896	918	896	918	0.98
18	18	5.6e-07	2.6e-05	24.0	1.3	1	23	924	946	924	946	0.97

Sequence Information

Coding Sequence: ATGATGAATGCTGAGCAGCATGCCTTGCCCTCTCCGTCATCTGGTCCTCCCGAGGAACCTTCCCACCCTGGTGGTCTGCGGCATTCTGGAACTCCTGCAGATTTTCGTGTAGGAACAGCTGTTGCTCTTTCTAGTGTCGCCAAATACTGGGTTTTAACCAATCTCTTCCCAAACCCTCTATCTCAAGTTCCTGTTTTTGGATTACATCAAAGGGGCAGTGAGCATGGGAAGGCTTCACCCTGTGATGGGCCGCCCTCTGTGCCGCCACAACCATTGCCTTCGCACTGCCTGAGCGCTCCTCCCCCCAGCGGCCCTGGCGGTGCCGCCCCTGCCTCTGCCCCAGCGCCTCCGCCTACGGCCATGGCCCTGGCTCCACACCACACGCAGCACTCGCAGTCGCAGGTCCCATGTGATCTCCAATTGGTAAATGCTGCCAATGTGCAGTCAAGTCAGCAATCTCAGCAGTCTCAGCAGCAAAGCTCTGAGCAGCTGAACagtcagcagcagcagcagcagcagcagcagcagcagcagcagcagccctCGCAACAGCAACAACAAGCATCGCAGCAACAGGCACAGTCGCAACAGAGTATGGGAGTGCAGTTACCTCAGCAGCCACAGCAAGCACCCATGCAACAGCACAACCAACAGCTTCAACAGCAGGCACAACCTCACCAAGTGCATCCTGCACAAGGCGACCGTGGACCGACAGGCGAAATGCCTCCCCAACAGCAGGCACAAGCACAGGCTCAACAGCCTCAGGGTCAGGGGCAACCAACACAAGCCCAGGGACAGCCTCAGGGCCAACCTACAGGGGGGCAACCACAGGTGCAACAGCCAGGTGCTGGAGCACAGGTCTCATCCCAGGAGGTGGGCACCCAGATGGACTCGAGCCCTGACCAATCGGTCAAGGATGAGAAACCCAGCACGAGTGGCTGCAATAAGAGTGAACGAAGTCTGCCCATGCCTGGTTTCCCAATACAGGAATTGAAAGGTCACATGATGGACATCAGGACACCAGATGGCAGCATTGTGAAAATTAGTGCTCCCGTGAGCACCGACCAAGAGTTGAGCAAGACTCTCGGTGTTGAGATGGTCCAAAATATGTATAAGGTTAATGTAGAGGACATAAACCAATTACTGGCGTACCACGAGGTGTTTGGAAAACTACAGAATGAGATGGCATCTGCAGGAAATACTACTAACACAGGAATGTCTGGTGGCGGAAGCTCTTCAAGCAAGTCATGCGGGGAGAGTGGCCCAGCCACTAGTAGCTCCACTTCACAATCGGCAGCCTCAACTGCAGTCATCTCCACTCCAGGCACCCACATCTGTGACATCTGCGGCAAGATCTTTCCTTTTCGCTACCAGCTGATTGTCCATCGCCGTTATCACACAGAGCGAAAGCCATTCACTTGCCAGGTTTGTGGAAAGGCATTCTCATGTTCTGCTGAACTAAGTCAACATGGGAAATGCCATCTTGGGGGAAGTATGTACACCTGTGCTGTGTGCTTTCATGTCTTTGCAAATGCTGCCAGTTTAGAACGTCACATGAAACGACATGCTACTGATAAGCCATATGTTTGCACAGTCTGTGGGAAATCGTTTGCTCGCAAAGAGCATTTGGACAATCACACGAGGTGCCACACGGGTGAGACACCTTATCGGTGCCAGTATTGCGCCAAAACCTTCACCCGAAAAGAACATATGGTCAATCATGTGCGTAAACATACTGGTGAAACTCCTCATCGATGTGACATATGTAAAAAATCCTTTACTCGCAAGGAGCATTTTATGAACCATGTTTTATGGCACACTGGTGAAACACCCCATGCTTGTCAAGTGTGTGGCAAGAAGTACACTCGTAAGGAACACCTGGCAAATCACATGCGCTCTCACACCAATGACACACCATTCCGGTGTGAGATATGTGGCAAGTCCTTCACTCGCAAAGAGCACTTTACGAACCACATAATGTGGCATACTGGAGAGACTCCCCATCGCTGTGACTTCTGTTCGAAGACTTTCACCCGTAAGGAGCATCTGCTGAACCACGTGAGGCAGCATACTGGTGAATCTCCTCATCGCTGTGGCTTCTGTTCCAAGTCGTTCACCCGCAAGGAGCACCTTATAAACCACGTTCGCCAACACACAGGTGAGACCCCTTTCCGATGCCAGTACTGCCCCAAGGCCTTCACCCGTAAAGACCACCTCGTGAACCACGTGCGGCAGCACACAGGGGAGTCGCCCCACAAGTGCCAGTACTGCACGAAATCTTTCACCCGTAAAGAACACCTCACGAACCATGTCCGTCAACACACGGGTGAATCGCCGCATCGCTGCCATTTCTGCTCCAAGTCTTTTACTCGCAAGGAGCACCTGACTAACCATGTGCGTATCCACACAGGCGAATCGCCGCACCGATGCGAGTTTTGCAACAAGACGTTCACACGCAAGGAACACCTGACCAACCACCTGCGCCAGCACACGGGCGAGACCCCGCACTGCTGCAACGTGTGCTCGAAGCCCTTCACCCGCAAGGAGCATCTCATCAACCACATGCGCTGCCACACTGGAGAGCGGCCCTTCAGCTGCGCCGACTGCGGCAAGTCCTTCCCGCTCAAGGGCAACCTGCTGTTCCACCAGCGCTCGCACAACAAGGGCGTGGCGGCGGAGCGGCCCTTCCGCTGCGATCTCTGTCCGAAGGACTTCATGTGCAAAGGGCACTTGGTGTCGCATCGCCGCTCACATTCAGGCGACCGGCCGCACTCTTGTCCGGATTGTGGCAAGACCTTTGTCGAGAAGGGCAACATGCTGCGCCATCTGCGCAAACACGCCACGGAAGGAGCAGGGCAGGCTGCGGGACCCCCGCCTCCGCAGGCGCCTCCCCCTGCGGGTCCTCCTCCTGGTCCCCCTCAGCACCAAGCTCCACACCACCACGCGCCGGGTCCCGGCAGCGGGCATGGCGTAGTGGCGGTGCCCACCACTCACCATCTACAGCACCACCCGCCCCCTCCACCCTTGCAACCTCATCCTCCGCACACCGCGGTAGTCGTCCCTGCTCCTAACGGGGTGCTGACTACTTATTAG
Protein Sequence: MMNAEQHALPSPSSGPPEEPSHPGGLRHSGTPADFRVGTAVALSSVAKYWVLTNLFPNPLSQVPVFGLHQRGSEHGKASPCDGPPSVPPQPLPSHCLSAPPPSGPGGAAPASAPAPPPTAMALAPHHTQHSQSQVPCDLQLVNAANVQSSQQSQQSQQQSSEQLNSQQQQQQQQQQQQQQPSQQQQQASQQQAQSQQSMGVQLPQQPQQAPMQQHNQQLQQQAQPHQVHPAQGDRGPTGEMPPQQQAQAQAQQPQGQGQPTQAQGQPQGQPTGGQPQVQQPGAGAQVSSQEVGTQMDSSPDQSVKDEKPSTSGCNKSERSLPMPGFPIQELKGHMMDIRTPDGSIVKISAPVSTDQELSKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQNEMASAGNTTNTGMSGGGSSSSKSCGESGPATSSSTSQSAASTAVISTPGTHICDICGKIFPFRYQLIVHRRYHTERKPFTCQVCGKAFSCSAELSQHGKCHLGGSMYTCAVCFHVFANAASLERHMKRHATDKPYVCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVLWHTGETPHACQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLINHVRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCNKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRCHTGERPFSCADCGKSFPLKGNLLFHQRSHNKGVAAERPFRCDLCPKDFMCKGHLVSHRRSHSGDRPHSCPDCGKTFVEKGNMLRHLRKHATEGAGQAAGPPPPQAPPPAGPPPGPPQHQAPHHHAPGPGSGHGVVAVPTTHHLQHHPPPPPLQPHPPHTAVVVPAPNGVLTTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00759473;
90% Identity: -
80% Identity: -