Basic Information

Insect: Laupala kohalensis
Gene Symbol: -
Assembly: GCA_002313205.1
Location: NNCF01127279.1:1486048-1496786[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1.2e-06 5.5e-05 23.0 9.0 1 23 32 54 32 54 0.98

2 19 7.7e-07 3.6e-05 23.5 3.5 1 23 60 82 60 82 0.99

3 19 0.0029 0.14 12.3 5.6 1 23 88 110 88 110 0.98

4 19 7.8e-05 0.0037 17.2 2.2 2 23 117 138 116 138 0.97

5 19 3.2e-05 0.0015 18.4 1.3 1 23 144 166 144 166 0.98

6 19 1.1e-06 5e-05 23.1 6.6 1 23 172 194 172 194 0.98

7 19 0.001 0.049 13.7 6.8 1 23 211 233 211 233 0.98

8 19 0.00012 0.0057 16.6 0.4 2 23 240 261 239 261 0.97

9 19 1.7e-06 8.2e-05 22.4 1.5 1 23 267 289 267 289 0.98

10 19 1e-06 4.8e-05 23.2 1.4 1 23 295 317 295 317 0.99

11 19 0.00036 0.017 15.1 5.0 1 23 332 354 332 354 0.98

12 19 0.0001 0.0048 16.9 2.2 2 23 361 382 360 382 0.97

13 19 7e-06 0.00033 20.5 2.0 1 23 388 410 388 410 0.98

14 19 4.4e-06 0.00021 21.2 4.1 1 23 416 438 416 438 0.96

15 19 1.2e-07 5.4e-06 26.1 4.4 1 23 754 776 754 776 0.99

16 19 4e-06 0.00019 21.3 3.4 1 23 782 804 782 804 0.99

17 19 0.0023 0.11 12.6 7.7 1 23 810 832 810 832 0.98

18 19 2.4e-05 0.0011 18.8 1.8 2 23 839 860 838 860 0.97

19 19 0.15 7.2 6.9 1.3 1 10 866 875 866 877 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1.2e-06	5.5e-05	23.0	9.0	1	23	32	54	32	54	0.98
2	19	7.7e-07	3.6e-05	23.5	3.5	1	23	60	82	60	82	0.99
3	19	0.0029	0.14	12.3	5.6	1	23	88	110	88	110	0.98
4	19	7.8e-05	0.0037	17.2	2.2	2	23	117	138	116	138	0.97
5	19	3.2e-05	0.0015	18.4	1.3	1	23	144	166	144	166	0.98
6	19	1.1e-06	5e-05	23.1	6.6	1	23	172	194	172	194	0.98
7	19	0.001	0.049	13.7	6.8	1	23	211	233	211	233	0.98
8	19	0.00012	0.0057	16.6	0.4	2	23	240	261	239	261	0.97
9	19	1.7e-06	8.2e-05	22.4	1.5	1	23	267	289	267	289	0.98
10	19	1e-06	4.8e-05	23.2	1.4	1	23	295	317	295	317	0.99
11	19	0.00036	0.017	15.1	5.0	1	23	332	354	332	354	0.98
12	19	0.0001	0.0048	16.9	2.2	2	23	361	382	360	382	0.97
13	19	7e-06	0.00033	20.5	2.0	1	23	388	410	388	410	0.98
14	19	4.4e-06	0.00021	21.2	4.1	1	23	416	438	416	438	0.96
15	19	1.2e-07	5.4e-06	26.1	4.4	1	23	754	776	754	776	0.99
16	19	4e-06	0.00019	21.3	3.4	1	23	782	804	782	804	0.99
17	19	0.0023	0.11	12.6	7.7	1	23	810	832	810	832	0.98
18	19	2.4e-05	0.0011	18.8	1.8	2	23	839	860	838	860	0.97
19	19	0.15	7.2	6.9	1.3	1	10	866	875	866	877	0.95

Sequence Information

Coding Sequence: ATGCTGGTAGGTATCCACAGTGATGCTGCTGATACTCTGCTTATGGTCCGCAGGGGCCCTTCCACTATGGGGTTGTCGCACCGCAGCGGCGACTACTGCTGTAAAGACTGTGGCAAGCAGTTCTCCCAACAGCACCATCTAACGCGCCATCAGCGCATCCATACGGGGGAGCAACCCTTCAAATGTGATATGTGCGGCAAGACCTTCTCTGACGAGAGCCACCGTCTTCGCCACTTACGAACACACATCGGTATCCGGAAGCATCGTTGCGAGGAGTGCGGGAAGGAATTCTTCGAGCACAACCAACTGCTGCGCCACTTCAAGCGCCATAGCGGAGAGCGCCCTTGGAGGTGTATGCAGTGCGACAAGGCCTTCTGCGAAGAGAGCGGCCTCAAGAAGCACATGTTCACGCACTCGACGGAGCGGCCGTACAAGTGCGACTACTGCGCCCAAGCGTTCTTCCAGCGCAGCGAACTGCAGCGCCACACCGCCAAGCACACGGGCAGCAACCTGCACAAGTGCGATCAGTGCGACAAGTCATTCACCGAGCGTCACAACCTCAACAAACACATGCAGACTCACGTGAAGTTCACCGCGTCGCAGTTCCACCTGCGCCAAAGCATGCGCAAGCATCGCTGCGAGCAATGCGGCAAGGCGTTCTTCCAGCGCTGTCAGCTGGTGCGCCACTTCAAGCGCCACAGCGCCGATCGGCCGTGGCAGTGCAACCAGTGCGACAAGGCCTATTACGAGGAGACGGGCCTCAAGAAGCACCAGCTCACCCATTCGGACGTGCGGCCCTTCAAATGCGACTACTGCGGGCGCGGCTTCTTCCAAAGGAGTGAGCTGGTGCGCCACACAAACTCGCATACGGGCGAGAGGAACTACAAGTGCGATATTTGCGAGAAGGCGTACTCTCGCCGGTACACTCTGCTCAAGCACATGTCTTCGCACATGGAAGGTGGGCAAGTGCCGACGCATCTGTGTCAGAGGAAGCATCGTTGCGAGGAGTGCGGAAAAGCCTTTTTCGAACACAACCAGCTGTTGcgccattacaagcgccatagcGGCGAAAGGCCGTGGCAGTGCAACCAGTGTGAAAAGTCTTACTGCGAAGAGACGGGTCTCAAGAAGCACATGCTGACGCATCAGACTGACAGACCCTACAAATGCGATTACTGCAATCGCGGCTTCTTCCAGCGGAGCGAACTCATGCGGCACACGGTCACTCACACCGGAGATAAGATGTACAAGTGTGAGATGTGTGACAAGTCTTTTGCCCGCAAACACAGCCTCAACAAGCACTTCGACAGCCATATGAAAGTGTCTCAGACACATCGCTGTGAGGTTCTTCTGTCTAACTTCCAGTCCCCTAACCCAACAGAGGAAAACAAGGCCCAGATGTatcaacctcctcctcctcctcctccaccccctcACCCTCCTCCAGAGAACAAGCCCATGTATCAGCCGACTAATGACAAACCTATGTATCAACAGCAACAGCCACCTCCTCAGACGCAACAGCAACCCACAAATGACAATAAAGGAATGTTCCAACCAACCAATGATAATAAAGGACTGTACCAACCAGCTGGGGAAAAGAGGCATGGCGGCCAGCTCAAACCCAGCGTGTGCGGCGCCCGCGCAGATGCAGATGGCCCCGGGCCAACCCGTGGCGGAGGTGAAGCTGTTGCTCGCCCCGAAGCCCATCATGTACCCGCACTTGGCCCAGGTGAGAAACACAGCGTCTCCCGCTGTTATGTATACAATTTGCACGCAAGCGCGGGGCCAACAGCACGGCCCACGCAGTTGCCCTACTTGTTGCAGGAAGGGCTCCCGGGTCAAGACCAGGTCAGCAAACCTGACGCCACGACCCTGTTCTGGGTTAAGCCCGAGCAGGGCTGCGGCGGGCAAGCCCTTCTCGCCCCACAACTTCAGACCGTCCAGCCTATGCCCGTGCCTTTACccaatcatcatcatcaacaacCACAATCACTGCCACAACCGCAGCCCCCTCCCCAACAGCAAGCACCCCCACCTCCACCCCCTCAACAGCAACCACCCTCTCAGCAAACACAACCACCCTCACAACAGCAACCACCTCCTCAGCAGCAGACTCAACAACAGCAAGTGACACCTGTCAAGAGCAAAGGATCCAAGGAGGGACGAGGAGCTGGTTGCAGTAGCAAGAGTGGCGATGGTGTTAGCCCCAGAGGGGCTTCCAGAGCGCCACGCAGGAGAGACCACCTCCTCGGAGAGTTCCGCTGCAAGGACTGCGGCAAGCTCTTCTCTCAGCCGCACCACCTGACTCGTCACATCCGCATCCACACGGGTGAACGACCTTTCAAATGCGACATGTGTGGTCGCACCTTCACGGACGAGAGCCACCGGCTACGCCACTTACGGTCACATTTAGGAGTACGCAAGCACCGTTGTGAGGAGTGTGGGAAAGAATTCTTTGAGCACAATCACCTTTTGAGACACTACAAGCGCCACCGAGGAGAACGTCCTTGGCGCTGTACTCAATGTGACAAAGCTTTTTGTGAAGAAAGTGGCCTAAAGAAACACGTGCAGACACACTCCTCAGAACGTCCATATAAATGCCATTACTGTGGCAGAGGTTTCTTGCAGCCTATGATCAAGGGCAGCAGTGGTGGCAAAGCTGGACGTGTCACTGATGTTCCTGGGACTTACTCGAGTGGAACCAACTGGCCCTAG
Protein Sequence: MLVGIHSDAADTLLMVRRGPSTMGLSHRSGDYCCKDCGKQFSQQHHLTRHQRIHTGEQPFKCDMCGKTFSDESHRLRHLRTHIGIRKHRCEECGKEFFEHNQLLRHFKRHSGERPWRCMQCDKAFCEESGLKKHMFTHSTERPYKCDYCAQAFFQRSELQRHTAKHTGSNLHKCDQCDKSFTERHNLNKHMQTHVKFTASQFHLRQSMRKHRCEQCGKAFFQRCQLVRHFKRHSADRPWQCNQCDKAYYEETGLKKHQLTHSDVRPFKCDYCGRGFFQRSELVRHTNSHTGERNYKCDICEKAYSRRYTLLKHMSSHMEGGQVPTHLCQRKHRCEECGKAFFEHNQLLRHYKRHSGERPWQCNQCEKSYCEETGLKKHMLTHQTDRPYKCDYCNRGFFQRSELMRHTVTHTGDKMYKCEMCDKSFARKHSLNKHFDSHMKVSQTHRCEVLLSNFQSPNPTEENKAQMYQPPPPPPPPPHPPPENKPMYQPTNDKPMYQQQQPPPQTQQQPTNDNKGMFQPTNDNKGLYQPAGEKRHGGQLKPSVCGARADADGPGPTRGGGEAVARPEAHHVPALGPGEKHSVSRCYVYNLHASAGPTARPTQLPYLLQEGLPGQDQVSKPDATTLFWVKPEQGCGGQALLAPQLQTVQPMPVPLPNHHHQQPQSLPQPQPPPQQQAPPPPPPQQQPPSQQTQPPSQQQPPPQQQTQQQQVTPVKSKGSKEGRGAGCSSKSGDGVSPRGASRAPRRRDHLLGEFRCKDCGKLFSQPHHLTRHIRIHTGERPFKCDMCGRTFTDESHRLRHLRSHLGVRKHRCEECGKEFFEHNHLLRHYKRHRGERPWRCTQCDKAFCEESGLKKHVQTHSSERPYKCHYCGRGFLQPMIKGSSGGKAGRVTDVPGTYSSGTNWP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -