Lko_23803-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01126105.1:216107-226760[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 38 2.1 1e+02 3.3 0.1 1 19 208 226 208 226 0.91 2 38 0.00023 0.011 15.7 1.3 1 23 235 258 235 258 0.94 3 38 0.0035 0.17 12.0 2.6 2 23 263 284 262 284 0.97 4 38 0.0017 0.079 13.0 1.2 1 23 303 325 303 325 0.99 5 38 0.046 2.2 8.5 3.6 1 23 331 353 331 353 0.91 6 38 0.00096 0.045 13.8 2.0 1 23 357 379 357 379 0.98 7 38 0.79 37 4.6 0.4 2 23 429 450 428 450 0.95 8 38 0.076 3.6 7.8 0.4 1 23 676 699 676 699 0.96 9 38 0.00028 0.013 15.5 3.2 2 23 706 727 706 727 0.97 10 38 0.01 0.49 10.5 0.2 2 23 736 758 735 758 0.95 11 38 0.0022 0.1 12.6 1.9 1 23 765 787 765 787 0.96 12 38 0.014 0.64 10.2 1.0 1 23 793 816 793 816 0.91 13 38 0.25 12 6.2 2.3 3 23 821 841 820 841 0.96 14 38 3.6e-05 0.0017 18.3 1.2 1 23 848 870 848 870 0.97 15 38 0.011 0.52 10.5 1.9 1 23 876 898 876 898 0.97 16 38 4.6e-05 0.0022 17.9 0.8 1 23 904 926 904 926 0.98 17 38 6.6e-05 0.0031 17.5 4.9 1 23 932 954 932 954 0.99 18 38 0.00026 0.012 15.6 0.2 1 23 960 982 960 982 0.97 19 38 0.032 1.5 9.0 2.9 1 23 988 1011 988 1011 0.95 20 38 1.4 64 3.9 2.7 1 23 1300 1322 1300 1322 0.97 21 38 0.004 0.19 11.8 4.7 1 23 1328 1351 1328 1351 0.97 22 38 2.7e-05 0.0013 18.7 3.2 1 23 1404 1426 1404 1426 0.98 23 38 0.001 0.047 13.7 1.6 1 23 1429 1451 1429 1451 0.98 24 38 0.4 19 5.5 4.5 1 20 1647 1666 1647 1669 0.93 25 38 1.1e-05 0.0005 19.9 4.2 1 23 1677 1699 1677 1699 0.98 26 38 0.006 0.28 11.3 0.7 2 23 1708 1730 1707 1730 0.95 27 38 2.3 1.1e+02 3.1 4.4 1 23 1734 1756 1734 1756 0.91 28 38 0.0054 0.25 11.4 0.3 2 22 1760 1780 1759 1782 0.89 29 38 0.0018 0.085 12.9 5.9 1 23 1795 1817 1795 1817 0.98 30 38 0.19 8.8 6.6 0.5 2 23 1825 1847 1824 1847 0.91 31 38 0.13 6 7.1 0.8 1 23 1879 1902 1879 1902 0.96 32 38 0.22 10 6.4 0.6 3 23 1907 1927 1906 1927 0.97 33 38 1.4e-06 6.5e-05 22.7 0.4 1 23 1934 1956 1934 1956 0.98 34 38 0.45 21 5.4 0.1 2 23 1963 1984 1962 1984 0.95 35 38 1.4e-05 0.00065 19.6 2.0 1 23 1990 2012 1990 2012 0.97 36 38 0.00093 0.044 13.8 2.1 1 23 2018 2041 2018 2041 0.98 37 38 4.5e-06 0.00021 21.1 1.9 1 23 2047 2069 2047 2069 0.98 38 38 5.5e-05 0.0026 17.7 0.7 1 23 2075 2098 2075 2098 0.97
Sequence Information
- Coding Sequence
- ATGAAAATGAAGAGGCGAGCGGATAAAGCTAAAAAGGTGAGAGGCCATAAATGGTCTCAAGTTGAGAAGCACAAAATGTATCCTGGACCGCCTTGCTTTGTATGCGGTGAGGAGATAACAAATCGTGGAATTCCTTTATTAGTTGGACGTACAGCACATTCCAAAACTGGTCTTCCAACAAAGATAGGACAACTGATGGGAGATGGATTTATGGTAGTTGTTAATACAGAAGACATGGTGTGCAGACGTTGTGCATCTCTCCTTGATCATTTAGACAAATTGGAAATTGATTTATATGATGTTAAATCATCATTGATGAATTATTTGAAGATCAAATATCAACTTTCTGATGAAGATGAGTTTGATGTTGATATCACATGTGGGCAGATTATTGTTTCGGAAGAAAGAGCATTGGTTGGTAGTCAAATTAAGACTGAGGTTTTGGATTCATGTGATGATTTTTCTGCCCAAGAACCTAATGGAAAGgaTGATGCTAGTGGATCAGAATGGGAGGAAGgtgaaataacaaagaaagttaatgttgaaataattctTGATGAAAACCATACCCAAAGAAGAAATACTCTGTCTTCATCTCCTGAAACTGCACAGTATTATGAGTTTGATTGTGATAAATGTGGTTTTGCAACTAATAATCTGTCTGAAATTGAGGAGCATCCAACTGTGTGTTGTAATTATAATCATGACTGTAGGATATGTGGCAAAAAATTTGCCTCAAGCAAAAATGTTCAAGATCATATTATGCAGACTCATCTTTCCAAATGGACATGTCATATTTGTAGTACCAACTTTAGTGAAGAACAGGAGTTTACTGCACACATGTGTGTTCACATTACTGACAAAGGTGAAGAAGTTAACTCGGGTTTGAAAAATGCGCTTGGTaattatgaatgtaatatttgTGACTTTGAGTgtagtgataaaatagaattTGATGATCATATTAGAAAACATGTTGTTTTGAAACCTTTTAAATGCAAAGTTTGTGGAAAGAGGTTTGAAGAGGATCATATGTTGGAGGAACATTGTGAAACCCATAAGATTGTTTTCAAGTGCCAGATTTGTTCAGCATCATTTTCTCTGGAAAGTAACTATGTGGAACACATGAAACATCATAGTAGACCAATGATCAGTGAAGATGTAATTGTATGGGCTAATAAACAAGATAAATTATTGAGTGGTAACAAATCATCAGAACTTGAGAAATTAGGATTGAAAAGTAGTGAGGAAATTGGAAGAAAGGAAGATGGAATTAAATTCTTATCATGCTCTCTTTGCTCTCTAACTTTTCTCAATAATGCTTTGTATGAACAACATGTGAAAAACCATTCTGAAGTTGGGTTAAGTTCTAATAGTAAAGATGATATGATGGATACAGATAATTCTCTTATTTCAAGCCTTGTTGACACTAATAATTTTGACAGTGTAATTGACGGAAGTCTTGAAGATATGTTTGAAAAGATACATTCTCATGTTGACTCCCCTGAAAGCAAGCCCATAGCaggttttaattcaaattcagCTGAAAATGCCAAAGATATATTTAGATGTGAATTGCCTAGTAGTCATATGGTGAAAACAAATGGTGAATCTGCTCGGATTCATTCTAACTCTTGTCTTGTTGGTGACATGTGTGTGGATAGTTCCAAtgtaaagaaattcttattaaatactgATATTTTGAAGTGTCAAGAGTCCTTAAATCTGAATTCTGTCCATACAAATCTGTTGGATCAAAATTCTTTTCCAGATGATAAAAGTACTTCAATAATTGCTCAATTAAATCATCATTCCAATATAATGAAACAAGATGtagatgaaaacaaattttcaaataagaaagtAGTCTGTGACCCTGTGCATCATTTACCATCTGAGAAAAACAATGTTGGTAAAAGTGGAATTGTTGGTGAAAGTAACCCATTTTCCAACCTGAATGATATGAATGGACTTGTATTTACTAACAGTAGTTCTGTGGAATCTAACTCAGaagtaaagaaaacttttatatgTGCCGAGTGTGGTTTTAGAAGGTTTTCTTCATTGGCTCTTCTTAAAGAACACTTTAAAGAACACAAAAAGAATAGCACTAACACTTGCACTTTGTGTAATAAATCATTCACCAGCAAGATGCGATTAAAGAAGCATTTGAAAGCTCATGAAAATTCTGTTGCAGGTAAAATGACATGCCCTAATTGTTATGAAGAATTTCCTgagtatgttaatttatttcagcACATGCAAGAAAAACATCCcaaagaaaaaattgtgtataaatgtgaattttgtagtGAAAAATTTACTTCTAGAAAAGCTTTCAAAGCACATGAAGAAAATCATCCTGAAAGGTTTGAATTCAAGTGTGATGAATGCAACCAGTCTTTTATGAAAGGCAAACAATTAAAAGACCATAAGGATTTGGTGCATAGAGATCCACATTGTCGATATTGTGGGAAAGAAATTGTCAAATTGAAGACACTTAGGAATCACGAGTTACGTCATTTGAGAGACAAAGACCATTTTGAATGTGATGTGTGCAAGCGTGTTTTCAAAACCAAGACTGGGTTACGACATCATGTAGCTGTTCACACTGGGGAGTATAAATATTGCTGTGATTATTGTGGTAGGGGATTTATGTCACGGATGATGATGGAGGAACATCGTAGTATGCATACCAAAGAAGAACGCTATGTTTGTGATGTATGTGGTAGGAAATTCAGCTTCCAAAGCACATACTGGATTCATCGCAAATGGCATGATAATCCTTATCCCTACAAATGTTCCTTTTGTAACCGCATGTTCAGACATTCTTCGTTGTTGGCAGTtcataaaagaaaacacacaGGAGAACGGCCTTATCAATGTCCTCATTGCCCGTTATCTTTTCCAGTTGGAGGCACATTGAAGCGACACTTAATTCTTCATACAGGGAAGTATCCCTTTAATTGTGATAGTTGTAAGCGTGGATTCACTACAAGGCATAAATATGCCACACATCTTGCTAAAGTGCATGGAGATTATGAACTTCTGAATATGAAGCAATCTCAGGGAGAATATAAAATGGTTATTAGAGAAGAACCAAAGCAAAATCCCGAATTTTCAGTGTGGAATATTCCAGAAGAATCACAGCACAGTGACATGAATTTTAAGTTAGAAGTAGCTGCTGCTGGAGATAGCATAGATCAAATAGATTCTGGCATTCCATGTTCTATTGTTACTGATGATTTGTTAGTGGACAGTGGTGTTGCTGCTAGAGTTGTTGAGATTGTTTTGGATGATGAGTCTCAGGCAGTAGCTACTGTCACCTTGGCAGAACCTAATCCTAATATTCTACCAGAACTTGAAAGGAGTGGCAAGCAGAAAAGAAATCTTTCCCTTTCTGGAACTTCTGAAGTAACTTGCTTTATTTGTGATGGATTTGCGAACGGGAAAGGTGTGCCATTATTAATGACTTGCACACCTCATTCTAATACACAACTTCCTTCAAAAATTGGTCAATTAATGGGGGATGGATTTATGGTAATTGTTGCAGTTACTGATATTTTATGCAAACGTTGCTCTTCATTAATAAACCAGCTAGACAAACTTGAATGTGACATCATCAAcgtaaaaaaagtattaacagagttattatttataaaatatcacttGTATGATGATTTTGATGTCACTTCACCTCATTCACTGAAGATAGAAAATTGTAAAGTAGAAGATAACAGTAGCTCTTCTGTTTTGAAGACTGTGAATTTTGAATGTGTTGAAAATGACAATCCCGATTGCCTCAATATTTATATTGGAAAAGATAGTGATATTTTATGTGATAAATCAAGTGTTGGCTTAGAATCTGTTGATGATTCTTCGAATGCCATTTCTCTCCACTACTGTAAATCTTGCTCATTCAGCACCTCTATTTTTGAAGAATTGACTTCTCATTTAAAAATTCACTCGAAACAAGAATTCTTTAAGTGTTTGGAATGCCATCAGAAGTTTGAGACTTGTTCAGATTTTGAATATCATATGGAAATGGTCCACAATGTGAATACTATccataatgacaaaaaaattaatcaggATCCTGACTATCATCCtactggaaagaaaatatataagtgTAATGTACGTAAATACTATCATCATAATAAGAAAGTATTTGATTCTCATAATTTCAAACACATTAAACTAGACAAATTTACTTGCAATATTTGCTTGAAAGTTTTTAAACATAGAGTTACTTTAAAGAAGCATATCTTAAGTCATCAAAGTTTCAAATGTGACCTGTGCTCTGcatcttttcaaaacaaaataagcttaactcgtcatttcaaaattcattcaatcaaggaagtaaacaaaaataaattgtatgttaatgatgttaatttaattattgttaataatcaaGAAGATACTTGTGTTAGCAGTTTACCAGGTCATGAAGAAggcaataaaaatgattttgttgaaaaattgtcAGATAATAATCCATCCTGTGATTATGACAAAGTAGAAATTTTGCTGGAAAAAATTCATTCTGATGATCCCAAAGAAAATTCTaatcttgataatattttgagCGGGAAAGATAACTTTAAATCCACTAGTGTGAGTATCTGTGGTGATGAGGTAATGAATAGGGCATTACATACAAGTAGAGATCAGGATATGTTAGAAGGTGGACAAGAATATAGGGAAATAACTGTTCAGGATAATTCTTATCAGTGTGAAGaacctgaaaattttaaaagtggtGGTAGTGAAACGCTCACAGATTTGAAGAGTCACAGTAATTTTACCAGTGTTGATAACAATGCGGAGACTGATACTGTGCACAAGGAGTATTCAGCTACAAGTGTtgttaaattttcagaaaagaacaaagaaaagctttttcaaaacgagaatatttcaaaaaaggtttttgtttgcTCTTTGTGTGGTTTGAGAACTTCCTCCGAGTCTCACATAAAAAGACACTTCAAATGTCACATTGCTCTAGAGAGAAAAACATATAAGTGTCACATATGTGAAAAAGTTCTTACAACGCATAGTAATTTAAAACGACATATTAGCCTACATGAAACTTGTGAGGTTGGTGTAGTAGAGTGTAATATGTGTAATGAAGTGTTAACTGACCGTCTCCACCTAAAATACCACATGGAGATTAAACATCCAGAATCATACCAGTGTTCCCTGTGTGACCACCaattcgaaaataaaaagttgtgtCGTGAACATGAACTATTGCACCCAACGATGCAAtgtgatatttgtcaaaaaatattttcttcagaaggTCGTTTGAAGAGTCACAAAGTATTAATTCATAATGATACTGATCTTCCTGTTTCCAGACCAAAGATTTTTAAATGCCATATATGCCTTAAAATTTTAACAACCTACCATAATTTAAAGAGGCATCTACAAAATCATGAGAAATATTCTGGAAATGTTAGTTGTATGATATGTAATGAGGAATTAACAGACAAATTACATTTGAGACAACATGtagaagaaaaacatcctgaaaaTCATCAGTGTTCATTTTGTCACAAAGTATTTTTGAACAGACGACTATGTAAAGCTCATGAAATGACTCATTCTGAACGTTTCATTTACAAATGTGAATTTTGTGAGAAACTTTTCTTAACCGAAGCTCGGCTAAAACGTCATCAAGATATAATGCACAGGGACCCTCACTGTCGTATTTGTGGCAAAGAAATTATCAATCCATTAAAACTTTTAGATCATGAAAGGAGACACAAAAGGCACAAATCATTGTTTTCTTGTGACCAGTGTCCAAAAGTCTTTCGAACTCCATCTGGTTTGAAGTATCATATGTCAGTTCACACTGGAAAATATGCAGTTTATtgtgaaatttgtggaaaagGTTTGCATTCAGAAGTAGTTCTTGAAGAACATAAAGCCACCCACACTAAAGAGATTCGTTACACGTGTGAGAAATGTGGAAGAACATTTTCATCGAACAGCACGTACCGTATGCATAGACTATGGCATGACAATCCACTTCCATATAAGTGTGATATTTGTGACCGTAAGTTCAAGCATACTTCTATCTTAGCTGTTCATAAACGTAGAGCTCACACTGGGGAACGTCCTTACAAGTGCCCTCATTGTAGTCAAACTTTTAGTGTCAGTAGCACTTTGAACAAACACATTATACTCCACACTAAGGAGTATCCTTACCGGTGTGAACAATGTGATAAAGGGTTCACAACAAGGACAAAAATTGCTCGACACATGGCCAAAATACATAATGATTATGAAATGTTGAATGCGAAAAAGAAAACCTGCGAGTACAAAATGGTTCTCCATCCTAGTGAATTTTCCAGTTCTATAAAAGATTCAAAAGAGGAAGCATTAATGGAAGTTGACCAAATTATTAATGAAGAGAAAGGGGTGGTTGAAGATGATGAGACTAATGCAGCCACTTTACAGGTATTGGAGAATGTAACTGTGGATCCTACACAAGAagctatttttacaattttccaacaagattttcccaaattttaa
- Protein Sequence
- MKMKRRADKAKKVRGHKWSQVEKHKMYPGPPCFVCGEEITNRGIPLLVGRTAHSKTGLPTKIGQLMGDGFMVVVNTEDMVCRRCASLLDHLDKLEIDLYDVKSSLMNYLKIKYQLSDEDEFDVDITCGQIIVSEERALVGSQIKTEVLDSCDDFSAQEPNGKDDASGSEWEEGEITKKVNVEIILDENHTQRRNTLSSSPETAQYYEFDCDKCGFATNNLSEIEEHPTVCCNYNHDCRICGKKFASSKNVQDHIMQTHLSKWTCHICSTNFSEEQEFTAHMCVHITDKGEEVNSGLKNALGNYECNICDFECSDKIEFDDHIRKHVVLKPFKCKVCGKRFEEDHMLEEHCETHKIVFKCQICSASFSLESNYVEHMKHHSRPMISEDVIVWANKQDKLLSGNKSSELEKLGLKSSEEIGRKEDGIKFLSCSLCSLTFLNNALYEQHVKNHSEVGLSSNSKDDMMDTDNSLISSLVDTNNFDSVIDGSLEDMFEKIHSHVDSPESKPIAGFNSNSAENAKDIFRCELPSSHMVKTNGESARIHSNSCLVGDMCVDSSNVKKFLLNTDILKCQESLNLNSVHTNLLDQNSFPDDKSTSIIAQLNHHSNIMKQDVDENKFSNKKVVCDPVHHLPSEKNNVGKSGIVGESNPFSNLNDMNGLVFTNSSSVESNSEVKKTFICAECGFRRFSSLALLKEHFKEHKKNSTNTCTLCNKSFTSKMRLKKHLKAHENSVAGKMTCPNCYEEFPEYVNLFQHMQEKHPKEKIVYKCEFCSEKFTSRKAFKAHEENHPERFEFKCDECNQSFMKGKQLKDHKDLVHRDPHCRYCGKEIVKLKTLRNHELRHLRDKDHFECDVCKRVFKTKTGLRHHVAVHTGEYKYCCDYCGRGFMSRMMMEEHRSMHTKEERYVCDVCGRKFSFQSTYWIHRKWHDNPYPYKCSFCNRMFRHSSLLAVHKRKHTGERPYQCPHCPLSFPVGGTLKRHLILHTGKYPFNCDSCKRGFTTRHKYATHLAKVHGDYELLNMKQSQGEYKMVIREEPKQNPEFSVWNIPEESQHSDMNFKLEVAAAGDSIDQIDSGIPCSIVTDDLLVDSGVAARVVEIVLDDESQAVATVTLAEPNPNILPELERSGKQKRNLSLSGTSEVTCFICDGFANGKGVPLLMTCTPHSNTQLPSKIGQLMGDGFMVIVAVTDILCKRCSSLINQLDKLECDIINVKKVLTELLFIKYHLYDDFDVTSPHSLKIENCKVEDNSSSSVLKTVNFECVENDNPDCLNIYIGKDSDILCDKSSVGLESVDDSSNAISLHYCKSCSFSTSIFEELTSHLKIHSKQEFFKCLECHQKFETCSDFEYHMEMVHNVNTIHNDKKINQDPDYHPTGKKIYKCNVRKYYHHNKKVFDSHNFKHIKLDKFTCNICLKVFKHRVTLKKHILSHQSFKCDLCSASFQNKISLTRHFKIHSIKEVNKNKLYVNDVNLIIVNNQEDTCVSSLPGHEEGNKNDFVEKLSDNNPSCDYDKVEILLEKIHSDDPKENSNLDNILSGKDNFKSTSVSICGDEVMNRALHTSRDQDMLEGGQEYREITVQDNSYQCEEPENFKSGGSETLTDLKSHSNFTSVDNNAETDTVHKEYSATSVVKFSEKNKEKLFQNENISKKVFVCSLCGLRTSSESHIKRHFKCHIALERKTYKCHICEKVLTTHSNLKRHISLHETCEVGVVECNMCNEVLTDRLHLKYHMEIKHPESYQCSLCDHQFENKKLCREHELLHPTMQCDICQKIFSSEGRLKSHKVLIHNDTDLPVSRPKIFKCHICLKILTTYHNLKRHLQNHEKYSGNVSCMICNEELTDKLHLRQHVEEKHPENHQCSFCHKVFLNRRLCKAHEMTHSERFIYKCEFCEKLFLTEARLKRHQDIMHRDPHCRICGKEIINPLKLLDHERRHKRHKSLFSCDQCPKVFRTPSGLKYHMSVHTGKYAVYCEICGKGLHSEVVLEEHKATHTKEIRYTCEKCGRTFSSNSTYRMHRLWHDNPLPYKCDICDRKFKHTSILAVHKRRAHTGERPYKCPHCSQTFSVSSTLNKHIILHTKEYPYRCEQCDKGFTTRTKIARHMAKIHNDYEMLNAKKKTCEYKMVLHPSEFSSSIKDSKEEALMEVDQIINEEKGVVEDDETNAATLQVLENVTVDPTQEAIFTIFQQDFPKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -