Basic Information

Insect: Laupala kohalensis
Gene Symbol: -
Assembly: GCA_002313205.1
Location: NNCF01129918.1:16288-76148[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.0032 0.15 12.1 2.0 1 23 400 422 400 422 0.94

2 27 1.5e-05 0.0007 19.5 0.8 3 23 430 450 428 450 0.96

3 27 0.00048 0.022 14.7 0.1 1 23 456 478 456 478 0.98

4 27 0.00017 0.0079 16.2 0.4 1 23 484 506 484 506 0.97

5 27 0.011 0.53 10.4 2.4 1 23 512 535 512 535 0.98

6 27 0.15 7 6.9 0.5 1 23 541 563 541 563 0.96

7 27 0.0024 0.11 12.5 0.5 1 23 570 593 570 593 0.92

8 27 8e-06 0.00038 20.3 0.4 1 23 601 623 601 623 0.95

9 27 0.0012 0.054 13.5 0.2 1 23 629 651 629 651 0.95

10 27 0.05 2.4 8.4 0.6 1 23 657 680 657 680 0.97

11 27 4e-05 0.0019 18.1 0.7 1 23 685 707 685 707 0.97

12 27 5.8 2.7e+02 1.9 2.5 1 23 711 733 711 733 0.95

13 27 2.8e-05 0.0013 18.6 0.5 1 23 739 761 739 761 0.95

14 27 1.5e-05 0.00071 19.5 0.1 1 23 767 789 767 789 0.98

15 27 3.1e-05 0.0014 18.5 1.3 1 23 878 900 878 900 0.98

16 27 9.8e-06 0.00046 20.1 2.9 2 23 907 928 906 928 0.96

17 27 2.6e-05 0.0012 18.7 0.1 1 23 934 956 934 956 0.98

18 27 0.0012 0.057 13.5 0.2 1 23 962 984 962 984 0.96

19 27 1.9e-07 9e-06 25.4 1.0 1 23 990 1012 990 1012 0.98

20 27 0.00024 0.011 15.7 4.2 1 23 1018 1040 1018 1040 0.97

21 27 1.3e-07 6.1e-06 26.0 0.3 1 23 1046 1068 1046 1068 0.97

22 27 0.00052 0.025 14.6 4.4 1 23 1073 1096 1073 1096 0.96

23 27 5.8e-05 0.0027 17.6 0.2 1 23 1101 1123 1101 1123 0.98

24 27 3.5e-06 0.00016 21.5 0.8 2 23 1130 1151 1130 1151 0.97

25 27 1.6e-05 0.00075 19.4 3.2 1 23 1157 1179 1157 1179 0.98

26 27 0.00071 0.033 14.2 1.8 1 23 1185 1207 1185 1207 0.97

27 27 4.2e-05 0.002 18.1 1.9 1 23 1213 1235 1213 1235 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.0032	0.15	12.1	2.0	1	23	400	422	400	422	0.94
2	27	1.5e-05	0.0007	19.5	0.8	3	23	430	450	428	450	0.96
3	27	0.00048	0.022	14.7	0.1	1	23	456	478	456	478	0.98
4	27	0.00017	0.0079	16.2	0.4	1	23	484	506	484	506	0.97
5	27	0.011	0.53	10.4	2.4	1	23	512	535	512	535	0.98
6	27	0.15	7	6.9	0.5	1	23	541	563	541	563	0.96
7	27	0.0024	0.11	12.5	0.5	1	23	570	593	570	593	0.92
8	27	8e-06	0.00038	20.3	0.4	1	23	601	623	601	623	0.95
9	27	0.0012	0.054	13.5	0.2	1	23	629	651	629	651	0.95
10	27	0.05	2.4	8.4	0.6	1	23	657	680	657	680	0.97
11	27	4e-05	0.0019	18.1	0.7	1	23	685	707	685	707	0.97
12	27	5.8	2.7e+02	1.9	2.5	1	23	711	733	711	733	0.95
13	27	2.8e-05	0.0013	18.6	0.5	1	23	739	761	739	761	0.95
14	27	1.5e-05	0.00071	19.5	0.1	1	23	767	789	767	789	0.98
15	27	3.1e-05	0.0014	18.5	1.3	1	23	878	900	878	900	0.98
16	27	9.8e-06	0.00046	20.1	2.9	2	23	907	928	906	928	0.96
17	27	2.6e-05	0.0012	18.7	0.1	1	23	934	956	934	956	0.98
18	27	0.0012	0.057	13.5	0.2	1	23	962	984	962	984	0.96
19	27	1.9e-07	9e-06	25.4	1.0	1	23	990	1012	990	1012	0.98
20	27	0.00024	0.011	15.7	4.2	1	23	1018	1040	1018	1040	0.97
21	27	1.3e-07	6.1e-06	26.0	0.3	1	23	1046	1068	1046	1068	0.97
22	27	0.00052	0.025	14.6	4.4	1	23	1073	1096	1073	1096	0.96
23	27	5.8e-05	0.0027	17.6	0.2	1	23	1101	1123	1101	1123	0.98
24	27	3.5e-06	0.00016	21.5	0.8	2	23	1130	1151	1130	1151	0.97
25	27	1.6e-05	0.00075	19.4	3.2	1	23	1157	1179	1157	1179	0.98
26	27	0.00071	0.033	14.2	1.8	1	23	1185	1207	1185	1207	0.97
27	27	4.2e-05	0.002	18.1	1.9	1	23	1213	1235	1213	1235	0.98

Sequence Information

Coding Sequence: aattttcaGAGAGCTTCCCATAAGgcatttatacatttatacatttataaggTTTTGCGTATTTTTGTATGCAATGGGTGGACAAAAGGGGTTGCAAATAAAGCAGAGTCTGCTTTCACAGCTGAGAGATCTGAACTTGGTACAAGTACCCAAACCTGCAGAGGATTTAAAAATCCGTGCGCAGGTCTGAAgtatgatgTTCTTGTATCCTCTTCCGATTCATCTGAACCTTCCTCACTTTTGCTACAGaAGCTGTTGATGGATCACCAGGGGATGACTATGATTCCTTTTAAAGAAGTGAAGTACAAGGACATGAAACTCATTTTAGATTTCATGTATCTCGGAGAAGTGGATGTTCCCCTTGTTGATGTGGCTTCTCTAATGGACACTGCTGAATTATTGCAAATCTCATCCTTAAGATGTGCCACTCACCATTTTGCAGAGGAATCGGCGACTGCTGATGTTTGTACGAATGAAAAGAGAGCAATTCCTAACAAAGATTTACATAGCGGCAGGAAAGACAGATTCGATTCCATCGGCCGGAACATTGAAGTGATATCAGTGAAGGGTTCTAAAAGGAAAGcaatatatgttttgaaacaactACCAGAGAAAGCAAATGAGGATCAACCAAACGTCAGTGTGTTTGAAACAGACGTTATCGGTTCCGATCATGTGAATAATATACGGGATGAATCTCTATCGATTACCTTTGTTGCTGTTCCTTCAGAACCTGAGGAGAGAGGAGAAGAGGAACAGAACAAAGGAGGTGAAGTGTGCGTTCACTCTGCTGATCAGAGTGTGTCCTACGATGCAAGAGATGGTACTGTTCCGGACGGAGCAGATGGTTTGGAAGTACAATACAAATCAATAAGTGTGATTTCTGTACCTGACTTGGAAGCAGGGAATTGGATTGACACAAGTGTGGTTGTTGAAGATACCAAAGTGAGTCGGGAATCATCCTCGTTAGGGGGAGAGGGAGAGATTTCAAATTGTGAATCACAGGAAACGTACCTCATTCATTACGAGCCAGCAGCAACCGAAGGATTAGGGGACGATGCGAATGTGAGTCATCTGGAGCCGAAGGAAGCCATTGTGCTTTTGGAGACTGCGGATCCCGATGGTCATCAAATGGAAGTTAGCCACGATACAGttaCAGGGCACAGGCAGCCCGAggaaaaagaagtaaagaaacgGTTTCCTTGTATTCATTGCGAGAAATCCTTCCCCACCGCAGACAGACTCAAGTCGCACAAGCGCTATCACAGCGGGACGAAGCCCCATCTCTGCGGCGTCTGCGGAGCGTCTTTCGTCGAGAAGAGTAACCTCAAGAGACACGCGAGACGTCACACGGGAGAGAGACCCTACTCGTGCGACGTTTGCGGTGCGTCTTACAGCGAAGGAGGCGCGCTCAAGAAACACTCGAGAACCCACACGGGCGAGAAACCCTACGCGTGCGGTATCTGCGGAGAATCCTATAGGTTGAAAAGTTCGCTGAAATATCACGTGACGAAACACACGGGCGAGAAGAGTTATCCGTGTTGTATTTGTAAAGAATCGTTCGGTGACATCGACTGTCGGAAGGCGCACATGAAGACCATTCATCCGGACGAGTATCCTTTCGCGTGTAGCGCCTGCGACGCCACCTATCTTCACAAGGCCATGTTGAAGAAACACGTGGCGACGCATTCGGGCGTGAGAGCGGCGTTCTCGTGCGACGCGTGCGACGCCTCCTTCTTTAGAAAGGATCTGCTGAAGAACCACCGCGCGGCGAAGCACTCGACGGCGGGTGCGAAGCCGTTTCTGTGCAGCGTCTGCGGAGCGTCGTTCGCCGAGAGAAGCAACTTGAAGAGGCACGAGCGGAGTCACGTGGGCGACAGGTCGTTCCTCTGCAGCTTCTGCGCGGCGTCTTTCGTGGAGAGCGGGGATCTGAAGAGGCACCTTAGGATTCACACGGGCGAGAAGAAGTTTCCGTGTCGCTTCTGTAGAGTGTCGTTTGGGGATTATAGTAGTCGTACAGCTCACGTGAAAACCGAGCACAGTGAATTTCTATTCGCGTGTAGTGTCTGCGACGCGTCGTTTGTGGAGAAGAGTAGTTTAAAGTCGCATCGGAAGAAACACGACAGGGAGTTTTCCTGCGTGTTGTGCGAAGCGTCTTTCGCGTGCAAGAGCGACCTCAAGTGCCACGTGGCGACTCACACGGGTGAGAAGACGCACGCGTGTGGCGCCTGCGGAGCGCGCTTCGTCCAGAGAGGAAACCTCAGGCGACACCAGAGGATCCACACGGGGGAGAAACCTTTCTCCTGCGACATCTGCGGAGCCGCCTTCGCCGAACGAGGGACTCTGAAGAGACACGTCAAGACTCACGTCGCAGAGACAAAGACGCATTCaAATCAGATCGGGGCTTCAGTGAATCGTAGGGTTAGATCAACGATGGCAACCTCCAGCGAAACTCGTGTGTCCTCGTGGCCATTCATTTCACCCACCACAGAACAGAAGGAAGTGGTGGAATGTTCTAGAGACGACCAGCAATTATCGGAAGGTGCCGCCGGATCTGAAATTAACTTTGTCGATCATCTTTACGTACATCCTCCTACCGACTACGGTCATTCTAGTTCACAAGAGAAATCGTTTCGTTGTAGCTTTTGTGAAGCGTCTTTCACTCTCAGAGGTAATTTGAAGACGCACATGAAAATTCACTCTGGTGAGCGACAACTCGAATGCCGCGTGTGTAAAAAGTCGTTTTCCGATAAAAGTTCCCTACACAAACACGTGCTGACACACACTAACGACAAACCGTTTGTTTGTCCGGTGTGTGAAGCGACGTTCGCTCTTCAGAAGTATCTGAAGGCTCACATGAAAATCCACTCGTATGACAAACCCTATCTGTGTGACAAGTGCCCGTTGTCCTTCGCCCAGAAGAGTATTCTGGAGAGACACGCGCTCACTCACATCGGTTGGAAGCCGTTTCCCTGTAGCTACTGCGGAGCGACCTTCCGCGACAAGAACAACCTCAAGACTCACGTGCGAACCCACACGGGAGAGAAGCCCTTCGCGTGTACTTTCTGTTCCGCTTCTTTCTCTCAAAACTGTTCTCTGAAGAAGCACTTGCGATCCCACACCGGCGAGAAACCCTTCACCTGCGACATATGCGGCAAATCGTTCGTGAACAAGGGTAGTCTGACGTCCCACATGGAACTTCACGCGGGCGTCAAACACCGATGTCGACACTGCGAAGCGTCCTTTAGGCAGATGAACAATCTGATAACGCACATGCGGCTGCAGCACAGCGAGAAGACGTTTTCCTGCGCTCTGTGTGAGGAGTCCTTTCAACAGAAGGAAGACCTGCAGGGTCACATGAGGATCCACACGGGCGAGAAGGCGCCCACCTGCGACATATGTGGCAAATCTTTCAACACGGAGAGAGCCCTGAAGAAGCACGCGCGCAATCACTCGGAGCGGAAACCCTTCTCTTGCGGCACCTGCAACGCGTCTTTTCGATACAACAGTCACCTGACTGTTCACACGAGGACGCACACGGGGGAGAAGCCCTTCGCGTGTACCTTGTGCGAAGCTTCGTTTCGTCAGAGCGGAGACTTAAAGTGTCACATGCGATCTCACACCGGGGAGACTCCCTTCTCGTGTAAATTCTGTGATTCCGCATTCCGATACGCGAGCAGTCTGAAGAAACACGTCCAAACCCACGCATCGTTTGTCGGTGAGAAATCTCTAGAGGAACACGGAAAATTTGTCGCAAGAGAATCTTGTGACATGAATGGAAGTCCCAACGGTAGCTGTTGTGGAGAAGAAAACAATTCGTCTTTAGAAGACAACATGGAGATTATAGACTTTGATTTGGCCAATGTGAAAGAAGAAATGCATTCTGTAGTGAGATGA
Protein Sequence: NFQRASHKAFIHLYIYKVLRIFVCNGWTKGVANKAESAFTAERSELGTSTQTCRGFKNPCAGLKYDVLVSSSDSSEPSSLLLQKLLMDHQGMTMIPFKEVKYKDMKLILDFMYLGEVDVPLVDVASLMDTAELLQISSLRCATHHFAEESATADVCTNEKRAIPNKDLHSGRKDRFDSIGRNIEVISVKGSKRKAIYVLKQLPEKANEDQPNVSVFETDVIGSDHVNNIRDESLSITFVAVPSEPEERGEEEQNKGGEVCVHSADQSVSYDARDGTVPDGADGLEVQYKSISVISVPDLEAGNWIDTSVVVEDTKVSRESSSLGGEGEISNCESQETYLIHYEPAATEGLGDDANVSHLEPKEAIVLLETADPDGHQMEVSHDTVTGHRQPEEKEVKKRFPCIHCEKSFPTADRLKSHKRYHSGTKPHLCGVCGASFVEKSNLKRHARRHTGERPYSCDVCGASYSEGGALKKHSRTHTGEKPYACGICGESYRLKSSLKYHVTKHTGEKSYPCCICKESFGDIDCRKAHMKTIHPDEYPFACSACDATYLHKAMLKKHVATHSGVRAAFSCDACDASFFRKDLLKNHRAAKHSTAGAKPFLCSVCGASFAERSNLKRHERSHVGDRSFLCSFCAASFVESGDLKRHLRIHTGEKKFPCRFCRVSFGDYSSRTAHVKTEHSEFLFACSVCDASFVEKSSLKSHRKKHDREFSCVLCEASFACKSDLKCHVATHTGEKTHACGACGARFVQRGNLRRHQRIHTGEKPFSCDICGAAFAERGTLKRHVKTHVAETKTHSNQIGASVNRRVRSTMATSSETRVSSWPFISPTTEQKEVVECSRDDQQLSEGAAGSEINFVDHLYVHPPTDYGHSSSQEKSFRCSFCEASFTLRGNLKTHMKIHSGERQLECRVCKKSFSDKSSLHKHVLTHTNDKPFVCPVCEATFALQKYLKAHMKIHSYDKPYLCDKCPLSFAQKSILERHALTHIGWKPFPCSYCGATFRDKNNLKTHVRTHTGEKPFACTFCSASFSQNCSLKKHLRSHTGEKPFTCDICGKSFVNKGSLTSHMELHAGVKHRCRHCEASFRQMNNLITHMRLQHSEKTFSCALCEESFQQKEDLQGHMRIHTGEKAPTCDICGKSFNTERALKKHARNHSERKPFSCGTCNASFRYNSHLTVHTRTHTGEKPFACTLCEASFRQSGDLKCHMRSHTGETPFSCKFCDSAFRYASSLKKHVQTHASFVGEKSLEEHGKFVARESCDMNGSPNGSCCGEENNSSLEDNMEIIDFDLANVKEEMHSVVR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00872404; iTF_00872733;
90% Identity: iTF_00872404; iTF_00872733;
80% Identity: iTF_00872404; iTF_00872733;