Basic Information

Insect: Laupala kohalensis
Gene Symbol: -
Assembly: GCA_002313205.1
Location: NNCF01127896.1:37898-67180[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 9.1e-08 4.3e-06 26.5 0.6 2 23 178 199 178 199 0.98

2 24 9.7e-06 0.00046 20.1 0.8 1 23 205 227 205 227 0.98

3 24 0.00037 0.017 15.1 1.6 1 23 232 254 232 254 0.98

4 24 1e-05 0.00048 20.0 0.6 1 23 259 281 259 281 0.98

5 24 2.6e-05 0.0012 18.7 1.9 2 23 287 308 286 308 0.96

6 24 4.4e-07 2.1e-05 24.3 0.6 1 23 313 335 313 335 0.97

7 24 0.0041 0.19 11.8 1.2 1 23 340 362 340 362 0.97

8 24 6.1e-05 0.0029 17.6 2.3 2 23 368 389 367 389 0.96

9 24 4.2e-07 2e-05 24.3 1.0 1 23 394 416 394 416 0.98

10 24 8.1e-07 3.8e-05 23.5 0.3 2 23 422 443 421 443 0.97

11 24 4.9e-07 2.3e-05 24.2 4.0 1 23 449 471 449 471 0.98

12 24 3.7e-05 0.0017 18.3 1.9 1 20 477 496 477 496 0.98

13 24 1.4e-06 6.4e-05 22.7 2.0 1 23 562 584 562 584 0.98

14 24 7.9e-07 3.7e-05 23.5 1.3 1 23 589 611 589 611 0.99

15 24 7.5e-05 0.0035 17.3 1.6 1 23 617 639 617 639 0.96

16 24 4.5e-05 0.0021 18.0 5.0 1 23 644 666 644 666 0.97

17 24 2.2e-06 0.0001 22.1 1.0 2 23 672 693 671 693 0.96

18 24 4.4e-05 0.0021 18.0 1.8 1 23 700 722 700 722 0.96

19 24 0.00065 0.03 14.3 0.6 1 23 728 750 728 750 0.98

20 24 5.6e-07 2.6e-05 24.0 2.8 1 23 755 777 755 777 0.99

21 24 0.00042 0.02 14.9 0.5 1 23 782 804 782 804 0.96

22 24 0.00024 0.011 15.7 6.7 1 23 809 832 805 832 0.97

23 24 7.5e-06 0.00035 20.4 2.5 1 23 837 859 837 859 0.98

24 24 0.00052 0.024 14.6 4.0 5 23 865 883 863 883 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	9.1e-08	4.3e-06	26.5	0.6	2	23	178	199	178	199	0.98
2	24	9.7e-06	0.00046	20.1	0.8	1	23	205	227	205	227	0.98
3	24	0.00037	0.017	15.1	1.6	1	23	232	254	232	254	0.98
4	24	1e-05	0.00048	20.0	0.6	1	23	259	281	259	281	0.98
5	24	2.6e-05	0.0012	18.7	1.9	2	23	287	308	286	308	0.96
6	24	4.4e-07	2.1e-05	24.3	0.6	1	23	313	335	313	335	0.97
7	24	0.0041	0.19	11.8	1.2	1	23	340	362	340	362	0.97
8	24	6.1e-05	0.0029	17.6	2.3	2	23	368	389	367	389	0.96
9	24	4.2e-07	2e-05	24.3	1.0	1	23	394	416	394	416	0.98
10	24	8.1e-07	3.8e-05	23.5	0.3	2	23	422	443	421	443	0.97
11	24	4.9e-07	2.3e-05	24.2	4.0	1	23	449	471	449	471	0.98
12	24	3.7e-05	0.0017	18.3	1.9	1	20	477	496	477	496	0.98
13	24	1.4e-06	6.4e-05	22.7	2.0	1	23	562	584	562	584	0.98
14	24	7.9e-07	3.7e-05	23.5	1.3	1	23	589	611	589	611	0.99
15	24	7.5e-05	0.0035	17.3	1.6	1	23	617	639	617	639	0.96
16	24	4.5e-05	0.0021	18.0	5.0	1	23	644	666	644	666	0.97
17	24	2.2e-06	0.0001	22.1	1.0	2	23	672	693	671	693	0.96
18	24	4.4e-05	0.0021	18.0	1.8	1	23	700	722	700	722	0.96
19	24	0.00065	0.03	14.3	0.6	1	23	728	750	728	750	0.98
20	24	5.6e-07	2.6e-05	24.0	2.8	1	23	755	777	755	777	0.99
21	24	0.00042	0.02	14.9	0.5	1	23	782	804	782	804	0.96
22	24	0.00024	0.011	15.7	6.7	1	23	809	832	805	832	0.97
23	24	7.5e-06	0.00035	20.4	2.5	1	23	837	859	837	859	0.98
24	24	0.00052	0.024	14.6	4.0	5	23	865	883	863	883	0.96

Sequence Information

Coding Sequence: ATTGATGCGTGTCAACCAATGGCAGGAGTTCAAGTGAAGATGGATAAATTTTCggatgaagaagaggaagatgaGGGCTTTTTACAAGAGATGTACGGCGCATATCTCAATGGAGTTGAAACCTTCCTGGCTATAGccatgacaataataaaattgaacaacACTGACGTTTTTCCTCTTCGTGTAACAGTTGTACGTCATCTCGTTTCTTTCATTGATGATCGTGAAGGAGACGATCAATGTGAGTGCCAACGATACGGACGTAATGGCAAAGTTGCTCTTatGGATGAATGTGAACCGTTTGCTGAAGTTCAAGTGAAAATGCATAAGTTTTCTGTTGAAGAAGGTGAAGAGGAAGTAGGTCAAGAAGAGGACCTTTCTCCTCGAGATGTGGCGAATGAGTTCAAACTTCCAAATACATCGAGTGCTGCCGATCAAACAAATATATCTGGTGAAAGGAATACACCTTCCAAAGTGGCATTGAAAGAATCAAGATTTTGTGAGAAGGAAAGTGTCCAGATAAATTGTGCGGAGTGTAAAGTTTGCGGAAAAACTTTTGCACGCAAATGGGATCTGAAAGTTCATTTGCGTACCCACCCAGGAGAGAAAACATTCACTTGTTCTGTGTGCCAGAAAAACTTCATCAAATTATCTCAGTTCGAGGCACACCTTCGAGTCCATTCGGGAAAGAAATTCACTTGTGATGTATGCCAAAAAGATTTCACCCTATTATCTGTTTTAAAGAAACACATACATATCCATTCAGGGGAGAAGTTCTCTTGTGAAGTGTGCTCCAAGAATTTCTCCagaatttacgatttaaaggaaCATGTGCGAATCCATTTGGGGGAGAGAGTCACTTGCGAGGTGTGCAACAAGGATTTCTCCTCTTTATCGAGTCTCAAAAAACATTTACATCTGCACGCGGGAGAGAAATTCTTCTGCGAGGTGTGCAACAAGGAGTTCAGCACCTCAGCAAATTTAAAGGAACACTTACGGATCCATTcggagaagaaatttttttgtgaggtttgtAAGAAAGGCTTTTTGAAAAGTAATGATTTGAAAGAACATACGCGTATCCATTCCGGAGTGAAATTGACTTGCGAGTTGTGCAATCTAAAATTCACAAGATTAAAGAGCCTTAGAAGACACACACGTCTCCATTTCGGAGAAAAATTCGTTTGTGAGGTGTGCAATAAGAATTTCTCCAACTTGTCTAATCTGAAGGATCACAAACGCATTCATTCTGGTGAGACGTGGAGGTGCGAGGTGTGCAACAAGGGTTTCTCCAGTCCGTCCTATCTAAAGAAGCACTTACTTGTTCATTCAGAAGAGAAGCAGTACTCTTGCGAAGGGTGCAACAAAAGTTTCTCCAGATTGCATAACTTGCAAAGGCACAAGCGACTCCATTGCGGAGTTCAAAAGTACACTTGTGAGCTGTGCCACAAAGACTTCACCAGGTTATCTTACTTAAGGCAACACATGCCTGGAAATTCATGTGTGAGGTTTGCAACAAAAATTTCTCCCGATTATCTTCTCTCAAAGATCACGAACGAATTCATAGTGGGAAGAAGCTCTCTTGCGAGTTGTGTTCCAAACGTTTCGTTAGCTCGTCTTATTTTAAGGAACACATGCGTGTTCATTCCGGCAAGTAATTCGCTTGACAATTCTAGACAGAAATTCACTTGTGATATATGCCACAAGCGTTTTTCCACGTTGCCGTACTTGAAGGAACACATCCGTATCCATAACGGAGAGAAATTCACATGTGACGTGTGCAACAAGAATTACACTGGATTATCCAGTCTAAAGCGACATATTCGCACCCACGCCGCAAGAGACAGGTTCCCCTGCGAGGTATGCAACAAGGATTTTTCCAGATTATCTTATTTAAAGGAACATTCTCATATCCATACTGGAGAGAAATTCTGTTGCGAAGTATGCAACAAAAAGTTCACCACCCTAACTTATTTAAAACAACACACACGTATTCACACGGGAGAGACATTGTCTTGTGAAATGTGCAACAAAGTTTTCACGAGGATTCAGAGTCTGAAAAGACACATTCGGTTGCATTCGGTTGCGGAAGACAACTTTGTTTGCGAGGTCTGCCACAGGAGTTTCACCAATTTAATTTATCTCAAGAGACATTCTCTTATCCATTCTGAGGAGAGACCGTTTATATGCGAGGTGTGCAACAAGGGCTTTCCCTGTCCCTCCAAACTGAAGGAACACGTACGTATTCATTCTGAGGTGAAATACCCCTGCGAGGTTTGCCACAGGAATTTCACCAGACTACTGAATCTTCAGAAACACATGCGTACACACACCGGAGAAAAATACTCCTGTGGTACGTGCAACAAGAATTTCATCAAGTTAATTAATCTTAAACAGCATGTAGAGCTCCATTGTGGAAAGAAATTCAATTGTGGAAAGtgcaacaaaagttttaaaaagggGCATCATTTGATGGTACACATGCGTGTTTCCCATTTGGGACAGAAATACGTTTGTGATGTATGCCATAAAGGTTTCACTAGATCGACTTATTTAAACCTACACAAGCGAATCCACTCAGGAGAAAAATGCATTTGCCACAAAGTTTTCTCTAGAATTAGCAGTCTGAATAGACATCGGCGCAATCATTCTTCAAGAGAGAGTGGGGGAGTAGAAGAGTTGTGTCCCGACATCGATTCATCGATGAGAGTTGCCACAGAATTGTTGTGA
Protein Sequence: IDACQPMAGVQVKMDKFSDEEEEDEGFLQEMYGAYLNGVETFLAIAMTIIKLNNTDVFPLRVTVVRHLVSFIDDREGDDQCECQRYGRNGKVALMDECEPFAEVQVKMHKFSVEEGEEEVGQEEDLSPRDVANEFKLPNTSSAADQTNISGERNTPSKVALKESRFCEKESVQINCAECKVCGKTFARKWDLKVHLRTHPGEKTFTCSVCQKNFIKLSQFEAHLRVHSGKKFTCDVCQKDFTLLSVLKKHIHIHSGEKFSCEVCSKNFSRIYDLKEHVRIHLGERVTCEVCNKDFSSLSSLKKHLHLHAGEKFFCEVCNKEFSTSANLKEHLRIHSEKKFFCEVCKKGFLKSNDLKEHTRIHSGVKLTCELCNLKFTRLKSLRRHTRLHFGEKFVCEVCNKNFSNLSNLKDHKRIHSGETWRCEVCNKGFSSPSYLKKHLLVHSEEKQYSCEGCNKSFSRLHNLQRHKRLHCGVQKYTCELCHKDFTRLSYLRQHMPGNSCVRFATKISPDYLLSKITNEFIVGRSSLASCVPNVSLARLILRNTCVFIPASNSLDNSRQKFTCDICHKRFSTLPYLKEHIRIHNGEKFTCDVCNKNYTGLSSLKRHIRTHAARDRFPCEVCNKDFSRLSYLKEHSHIHTGEKFCCEVCNKKFTTLTYLKQHTRIHTGETLSCEMCNKVFTRIQSLKRHIRLHSVAEDNFVCEVCHRSFTNLIYLKRHSLIHSEERPFICEVCNKGFPCPSKLKEHVRIHSEVKYPCEVCHRNFTRLLNLQKHMRTHTGEKYSCGTCNKNFIKLINLKQHVELHCGKKFNCGKCNKSFKKGHHLMVHMRVSHLGQKYVCDVCHKGFTRSTYLNLHKRIHSGEKCICHKVFSRISSLNRHRRNHSSRESGGVEELCPDIDSSMRVATELL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -