Lko_35504-RA


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Laupala kohalensis
Gene Symbol
-
Assembly
GCA_002313205.1
Location
NNCF01131199.1:5201-22160[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 1.5e-05 0.0007 19.5 0.9 1 23 314 336 314 336 0.97
2 22 1.6e-05 0.00074 19.4 2.0 1 23 342 364 342 364 0.99
3 22 7.1e-06 0.00033 20.5 0.7 1 23 370 392 370 392 0.93
4 22 0.00061 0.029 14.4 0.7 1 23 398 420 398 420 0.98
5 22 0.00016 0.0073 16.3 1.8 1 23 426 448 426 448 0.98
6 22 0.023 1.1 9.4 6.9 1 23 454 479 454 479 0.83
7 22 7.6e-06 0.00036 20.4 3.7 1 23 485 507 485 507 0.99
8 22 3.4e-06 0.00016 21.5 4.0 2 23 514 535 513 535 0.97
9 22 4.3e-09 2e-07 30.6 2.1 1 23 541 563 541 563 0.99
10 22 1.7e-06 7.9e-05 22.5 0.9 1 23 569 591 569 591 0.99
11 22 1.8e-07 8.6e-06 25.5 1.7 1 23 597 619 597 619 0.99
12 22 8.8e-07 4.1e-05 23.4 2.5 1 23 625 647 625 647 0.99
13 22 1.6e-07 7.6e-06 25.7 1.4 1 23 653 674 653 674 0.99
14 22 7.4e-07 3.5e-05 23.6 1.9 1 23 680 702 680 702 0.99
15 22 2.1e-07 9.9e-06 25.3 1.6 1 23 708 730 708 730 0.99
16 22 1.1e-05 0.00054 19.8 1.9 1 23 736 758 736 758 0.98
17 22 6.6e-06 0.00031 20.6 2.2 1 23 764 786 764 786 0.99
18 22 4.9e-06 0.00023 21.0 2.6 2 23 801 822 800 822 0.96
19 22 2.2e-08 1.1e-06 28.4 2.5 1 23 828 850 828 850 0.99
20 22 4.8e-07 2.3e-05 24.2 1.4 1 23 856 878 856 878 0.98
21 22 1.1e-07 5e-06 26.2 2.0 1 23 884 906 884 906 0.99
22 22 5.4e-09 2.5e-07 30.3 0.9 1 23 912 934 912 934 0.99

Sequence Information

Coding Sequence
atgtcttcctttcttTCTGTGAGTGATTCTACaactaaatatttgaatgatttccaaGATGTACtagagaaattgaataaagatcaaCCAAAAGGCAGCATTTCCAATATCTGTgataatttcaaggaaattacaagacaagataaagaaaatgtgaatgatGAACTAGTTCCTttaacttttgttgctgttcctccaGTTTTGGAGATTAATGAACTGATTGAGGGGCATGAAGATGATGTGAGGTGTTTTGATTTAGTTTTGAAGGATCCTCTTGGGGaatattctggtattttaaatgttgcaaacgaaagaaatattaaagaggaatGCACTTTCCAAAGTGAACTGCAAGTGAAGAGTGAACTCAAAGAAGAGAATGATGTTCCTGAATCAATGACGAAAGTTGTTCTCATAACTGACAAATTGACACATTCATGTCATGAGTTGACAAGTGCAGAAAGTAATCCATTTGTATCCTGTGATCAAGAGAGTGTTGTGGAGAGCAATCCAGgtgttatttttagtaatacattgTGTTCTGAGGTTTGTGCTGCTGAAGAAAcacatgacatggaaataaaatttgaatctatctgtgaaatttctggagctgatgtgaaagaggaaaaagtATTTGAAACTGGCCAATGCTTAAATCATAGTATAGGTGATGATACAGGAACACCTCCATTGGAACCTGGAAGTAAGTTGTTAAAAAGAGGTGCTCAGCATGATTCGAAAATTGATTACCAACAAGATGTGAATAAACAAGAACATGTTGCAAGCACAAGTAAAATTAGCTCCCCATTTCACTTGGAAATTGGAAACGATACCCCAGCTATACATAGTTCAGCGTTCACGCAAACTAAACCTTGTGAGGAGAGAACCGAATCGATGGTGAGAACAGGAAGTAATTTGCACATTGGAAGTAAACTTTTCCAATGTCAAATTTGCAAAGTTTTATTCAGTAGAAGTAGTTATCTCAAGAGGCACATTGTAATACATTCCAGGGAGAAACCttttcagtgtgaaatttgtgaatcccCATTTTCCCAAAAATGTAATCTCTTGAGTCACATGCAAACACATACTGAtgtgaaaccatttcagtgtgaaatatgtgaaaaatcatttagtgaaaaaaaagATCTTAAAAATCACATCCCAACACATACcggggagaaaccttttcaatgtgaaatttgcaaaTCTTTGTTCAGTGAAAGCAGTAGTCTCAAGATGCACGTTTTAACTCATACTGGTGTGAAaccatttcaatgtaaaatttgtcaATCCTCCTTTAGGAAAAgcattgatttgaaaatacatttgtttacacaTACTGATGTGAGAACATTCCAgtgtgaattatgtaaaaaatcatttaggaAATCNTTTACGAAATCATCTCTGAAgacgcacatgctaacacacaCTGGGGTGAAACCATACCAGtgtgatatttgtcaaaaatcatttacgtGTTCATCAAATTTAAAGACACACATGGTAACACACACTGGGGTGAAACCATGCCGgtgtgaattatgtaaaaaatcatttacttcttCAGGATCTCTGAAgacgcacatgctaacacacaCTGGGGTGAAACCATACCAGtgtgatatttgtcaaaaatcatttagaaCATCATCCAATTTGAAGACGCACATGTTAACACATTCTGGGGTGAAATCATTTCAGTGTGATATTTGTCCAAAATCATTTACGTATTCATCTATTTTAAAGACTCACATGCTAACACACACTGGGGTGAAATCATTTCAGtgtgatatttgtcaaaaatcatttacaatatcATCCACTTTGAGGAAGCACATGTTAACACATTCTGGGGTGAAATCATTTCAgtgtgaattatgtaaaaaatcatttgcgAGATCATTCACTCTGAAgacgcacatgctaacacacGCTGGGgtgaaaccatttcagtgtgatATTTGTCCAAAATCATTTACATCATCCCAATTGAAGAAGCACATGTTAACACATTCTGGGgtgaaaccatttcagtgtgatctttgtcaaaaatcatttatgaaTGCATACACTCTGAAGAAGCACATGCTAACACACACTGGGGTAAAACCATTTCAGtgtgatatttgtcaaaaatcatttatgaaTGCATACACTCTGAAGAAGCACATGCTAACACACACTGGGGTAAAACCATTTCAGTGTGATATTTgtcgaaaattatttacattttcatcccAATTAAAGACGCACATGTTATTACATTCTGGGGTAAAATCATTTCAGtgtgatatttgtcaaaaattatttacgtattCAACATCTCTGAAGAAGCACCTGCTAACACACACTGGGACACACATGGTAACACACACTGGGGTGAAACCATGCCGgtgtgaattatgtaaaaaatcatttacttcttCAGCATCTCTGAATACGCACATGCTAATACACACTGGGGTGAAACCATACCGGtgtgatatttgtcaaaaaacataTAGCACAAAATCCAATTTGAAGACGCACATGTTAACACATTCTGGGGAGAAATCATTTCAGtgtgatatttgtcaaaaatcatttacaatatcATCCACTTTGAGGAAGCACATGGTAACACATTCTGGGGTGAAATCATTTCAgtgtgaattatgtaaaaaatcatttgcgAGATCATCCACTCTGAAgacgcacatgctaacacacactggggtgaaaccatttcagtgtgatATTTGTCCAAAATCATTTACAACATCATCCCAATTGAAGGAGCACATGTTAACACATTCTGGGagttttaaatattaa
Protein Sequence
MSSFLSVSDSTTKYLNDFQDVLEKLNKDQPKGSISNICDNFKEITRQDKENVNDELVPLTFVAVPPVLEINELIEGHEDDVRCFDLVLKDPLGEYSGILNVANERNIKEECTFQSELQVKSELKEENDVPESMTKVVLITDKLTHSCHELTSAESNPFVSCDQESVVESNPGVIFSNTLCSEVCAAEETHDMEIKFESICEISGADVKEEKVFETGQCLNHSIGDDTGTPPLEPGSKLLKRGAQHDSKIDYQQDVNKQEHVASTSKISSPFHLEIGNDTPAIHSSAFTQTKPCEERTESMVRTGSNLHIGSKLFQCQICKVLFSRSSYLKRHIVIHSREKPFQCEICESPFSQKCNLLSHMQTHTDVKPFQCEICEKSFSEKKDLKNHIPTHTGEKPFQCEICKSLFSESSSLKMHVLTHTGVKPFQCKICQSSFRKSIDLKIHLFTHTDVRTFQCELCKKSFRKSFTKSSLKTHMLTHTGVKPYQCDICQKSFTCSSNLKTHMVTHTGVKPCRCELCKKSFTSSGSLKTHMLTHTGVKPYQCDICQKSFRTSSNLKTHMLTHSGVKSFQCDICPKSFTYSSILKTHMLTHTGVKSFQCDICQKSFTISSTLRKHMLTHSGVKSFQCELCKKSFARSFTLKTHMLTHAGVKPFQCDICPKSFTSSQLKKHMLTHSGVKPFQCDLCQKSFMNAYTLKKHMLTHTGVKPFQCDICQKSFMNAYTLKKHMLTHTGVKPFQCDICRKLFTFSSQLKTHMLLHSGVKSFQCDICQKLFTYSTSLKKHLLTHTGTHMVTHTGVKPCRCELCKKSFTSSASLNTHMLIHTGVKPYRCDICQKTYSTKSNLKTHMLTHSGEKSFQCDICQKSFTISSTLRKHMVTHSGVKSFQCELCKKSFARSSTLKTHMLTHTGVKPFQCDICPKSFTTSSQLKEHMLTHSGSFKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-