Basic Information

Insect: Laupala kohalensis
Gene Symbol: lola_24
Assembly: GCA_002313205.1
Location: NNCF01127477.1:108230-165400[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 5.6e-06 0.00026 20.8 2.1 1 23 465 487 465 487 0.98

2 27 2.2e-06 0.0001 22.1 0.9 1 23 493 515 493 515 0.98

3 27 1.7e-05 0.00078 19.3 3.8 1 23 521 543 521 543 0.97

4 27 5.7e-07 2.7e-05 23.9 2.8 1 23 635 657 635 657 0.98

5 27 0.0096 0.45 10.6 2.6 1 23 663 688 663 688 0.73

6 27 2.6e-06 0.00012 21.9 3.2 1 23 694 716 694 716 0.98

7 27 2.3e-07 1.1e-05 25.2 0.5 1 23 722 744 722 744 0.95

8 27 1.3 60 4.0 0.1 1 12 751 762 751 765 0.88

9 27 9.7e-05 0.0046 16.9 4.0 1 23 786 808 786 808 0.98

10 27 9.6e-05 0.0045 16.9 2.7 1 23 816 838 816 838 0.98

11 27 1e-05 0.00049 20.0 3.0 1 23 843 865 843 865 0.98

12 27 1.6e-05 0.00077 19.4 0.3 1 23 870 892 870 892 0.98

13 27 7.8e-07 3.7e-05 23.5 0.3 1 23 897 919 897 919 0.98

14 27 5.6e-05 0.0026 17.7 1.2 2 23 925 947 924 947 0.96

15 27 5.6e-05 0.0026 17.7 1.2 2 23 967 989 966 989 0.96

16 27 6.9e-06 0.00033 20.5 0.8 2 23 995 1016 994 1016 0.97

17 27 3.2e-06 0.00015 21.6 2.1 1 23 1021 1043 1021 1043 0.98

18 27 2e-05 0.00095 19.1 3.3 1 23 1048 1070 1048 1070 0.98

19 27 7.6e-05 0.0036 17.3 4.1 1 23 1106 1128 1106 1128 0.98

20 27 9.6e-05 0.0045 16.9 2.7 1 23 1136 1158 1136 1158 0.98

21 27 1e-05 0.00049 20.0 3.0 1 23 1163 1185 1163 1185 0.98

22 27 1.7e-05 0.00078 19.3 0.3 1 23 1190 1212 1190 1212 0.98

23 27 7.8e-07 3.7e-05 23.5 0.3 1 23 1217 1239 1217 1239 0.98

24 27 5.6e-05 0.0026 17.7 1.2 2 23 1245 1267 1244 1267 0.96

25 27 6.9e-06 0.00033 20.5 0.8 2 23 1273 1294 1272 1294 0.97

26 27 3.2e-06 0.00015 21.6 2.1 1 23 1299 1321 1299 1321 0.98

27 27 2e-05 0.00095 19.1 3.3 1 23 1326 1348 1326 1348 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	5.6e-06	0.00026	20.8	2.1	1	23	465	487	465	487	0.98
2	27	2.2e-06	0.0001	22.1	0.9	1	23	493	515	493	515	0.98
3	27	1.7e-05	0.00078	19.3	3.8	1	23	521	543	521	543	0.97
4	27	5.7e-07	2.7e-05	23.9	2.8	1	23	635	657	635	657	0.98
5	27	0.0096	0.45	10.6	2.6	1	23	663	688	663	688	0.73
6	27	2.6e-06	0.00012	21.9	3.2	1	23	694	716	694	716	0.98
7	27	2.3e-07	1.1e-05	25.2	0.5	1	23	722	744	722	744	0.95
8	27	1.3	60	4.0	0.1	1	12	751	762	751	765	0.88
9	27	9.7e-05	0.0046	16.9	4.0	1	23	786	808	786	808	0.98
10	27	9.6e-05	0.0045	16.9	2.7	1	23	816	838	816	838	0.98
11	27	1e-05	0.00049	20.0	3.0	1	23	843	865	843	865	0.98
12	27	1.6e-05	0.00077	19.4	0.3	1	23	870	892	870	892	0.98
13	27	7.8e-07	3.7e-05	23.5	0.3	1	23	897	919	897	919	0.98
14	27	5.6e-05	0.0026	17.7	1.2	2	23	925	947	924	947	0.96
15	27	5.6e-05	0.0026	17.7	1.2	2	23	967	989	966	989	0.96
16	27	6.9e-06	0.00033	20.5	0.8	2	23	995	1016	994	1016	0.97
17	27	3.2e-06	0.00015	21.6	2.1	1	23	1021	1043	1021	1043	0.98
18	27	2e-05	0.00095	19.1	3.3	1	23	1048	1070	1048	1070	0.98
19	27	7.6e-05	0.0036	17.3	4.1	1	23	1106	1128	1106	1128	0.98
20	27	9.6e-05	0.0045	16.9	2.7	1	23	1136	1158	1136	1158	0.98
21	27	1e-05	0.00049	20.0	3.0	1	23	1163	1185	1163	1185	0.98
22	27	1.7e-05	0.00078	19.3	0.3	1	23	1190	1212	1190	1212	0.98
23	27	7.8e-07	3.7e-05	23.5	0.3	1	23	1217	1239	1217	1239	0.98
24	27	5.6e-05	0.0026	17.7	1.2	2	23	1245	1267	1244	1267	0.96
25	27	6.9e-06	0.00033	20.5	0.8	2	23	1273	1294	1272	1294	0.97
26	27	3.2e-06	0.00015	21.6	2.1	1	23	1299	1321	1299	1321	0.98
27	27	2e-05	0.00095	19.1	3.3	1	23	1326	1348	1326	1348	0.98

Sequence Information

Coding Sequence: ATGGAATCTGTTCGATGGGAAAATCATGGCTCCCACGTACTGTGCTTAATAGGTAAATTGTACCAGGACATGCAATTTATTGACTGTACACTTGATACAGAAGGTGGCTTTATAAAAGGGCATACAGCTATTTTGGCAGCCTGCAGTCCATATTTGAAGAAGCTCTTTATGGATAACAAGAGGATAGAAACAGTTCCCTTGAAGGAAGTGAAATATAAAGATAtgaaactcattttggatttCATCTATTATGGTGAAGTGGTAGTACCAGTGACTGATGTGACATCTTTAGTGAAAACTGCCCAACTGTTGCAGATTGCTTCATTGAAAACTAGCCTTTCTCAAGATGTTTCAGGGAATCTTCCTCATAATATCACTTGTGAGCAAAGTAAGTGTGCCAGTGAGGTTACCTGTGAAGTTGATCCGATGAAAAATCATGAAGGAGACTCGTCTATACGAGGAAATAGGGAAACTAGTTGCCAAGATAAACTGTTTGAGAAAGAACACAATGTGGGTTTCTCTTCAGAAAACACAGATTGTAATGAGGAGGAGAGCAATGCTTTGCAACACGTTTCTGATGGAATAGATGATGGTGGTGAACCGACTGATGTGAGCATTCTACAGACAAGGGCTTCAAAGGCTTTGGAGGATGATGCTGCTACACCTTACGTTTCAGTAAAAATTGAAGATCCCAATGAGAGTGGTgttgaaagaaatgaaagcaatttggaaatacaatttgaatCCATCTGTGATGTTTCTTTACTTGAAATTAAGGCGGAGAAGTCTTTTGTGTCTGGACTGAACTCTGAAAATGTTGAAGAATTTGATAATGAACCTCCCTTATTGGAACCattgtgtgtgtttttaaaaGATGAACCAGAAGAATTGGAAGATGTTGATAATTTCCAAGATGAGACAGATACAATTCATGTTTCTAATGCAAGTCGAGTGATATTAAAGGAGGTAAGAGTTGCACTGGAAAGAATATCTCTACCAGGAGTCGACCCGTCGCATCAAATGGGAATTGGCTATGACAAATTAGATTTCGATGAAACGAGTGGGTTTCTGCTCAGAAACGCCTTAACCTCCAAAGAGGCTGTAAGACCCAAGAATAGTTCCCGGGAAGATGATTCGTGTAGACGAATGCTGCAAGGTGACTCTGTTTCCGACTTTGAGATAAAATGCGAAGAACAGCTCTCTTCACATTCAGATGAAAATATCTTCTTACGCCACCCTTGCTCTTCGACATTCACTCCTAGCTGCGAGTTAAAACAAGACGGCAGAGTTCATTCGGCGGACAAACCCGGTCTgtgtattgttaataaatcacCGGTTAATAAAGAAGATGTTTTTAATACACCTTTGCAAACACATGCTGGAGAGAAACTTTACATTTGTAGCTTTTGTGAAATGTCATTCAATAAAGAATCCAACCTGAAGAGACACATGCAAAGGCACACCAAAGAGAAACTGTACCAATGCATTATTTGTGAAAAGTCATTTAGTGTAAACGACAGCCTTAAGAGACACATGCGGTCACACACTGGGGATAAACAATTTCATTGTGGTACTTGTGGAAAGTCTTTTGTTCAAGGAAGTCACCTTAAAAGACACCTGTTGTCTCACGCAGGAAAGAAATCAACACACGGCAGTATTGTTTGTGAAAAAGAAGCATCTGAAGAAGCAAACGATGCGCACGTGTCGTTGTCTCATCCCCCAGGAGAGAAACAATTGCACAGTGGCATCTGTGAGAATGCGTCTAAAGAACAAAGTGGTTTCGATACAAATGTTTTGTCTAAAGAGAAGTCAGAACAGAAACAGTCAAGCATTTGTGAAAACGCATCGAAAGAACAAAGTGATTTAAACACAGATATTGTGACTCACTCTCGAGATAAATCTTACCATTGTGGCGTTTGTGATCAATCGTTTAAAGGAAAATCTAATCTAACGAGACATATGCGAAATCACACAGGGGAAAGACCGTTCCAGTGCAGTATATGTGGAAAAGCATTTAACTCATTTAAAGAAGTGTATCTTTTAAATAGACACATAAAATCTCACACTGAAGATAACGTGCACCAGTGCACCATTTGTCAAAAGACTTTTAGTACGAAAACTGCTGTGAAGGTCCACATGCGTAGTCACACAGGTGAGAGACCGTTCCTATGTAGTGTATGTGGAAAGTCATTCAGTGTTAATGATAGCTTGAAGAGACATATGCAAATTCACCGTACTGTTCAGAAACACTATAGTTGTGGCGTCTGTGACACTTCGTTTCAGGATAGAATCGCTGCATCAGAAAATGTGGTTGCTGAGGAACTTGAAACTGCTACTGAAAGTTCGGGAGAGAAATTCACTTGTGAAGAATGCAACATGAGTTTCTCTAGTGTGTCCCATTTTAAGAATCACAAACAAATGCATATGGCAGGAAAAAGACTTCGTTTCTCTTGCATGGTGTGCGACAGGAAGTTCACGAGGATGATCCATCTGAAGCAACACGTGCGTGTCCACAGTGAGAAAATATTCACGTGTGCAGTGTGCAACAAGGACTTCAAGCAACACTCTTCCCTAAAACAACATATGAATGAACATACAGGAAAAAAATTCACTTGTGAAGTGTGCGACAGTAGTTTCAGTAGATTACCGTATCTACGAGTTCACATGAATATCCACTCGGGCAAGAAATTCCCTTGTAAGATTTGCAATAAAGTTCTGAGCTCGAATCCCAGTCTTCAGAGACATATGCGCATCCACTCGGGAAAGAAAATATCGTGTGACATGTGTGATAAAACTTTCACCAGAATATGTGGTCTTAAGGATCATATTCGCATATCCCATGTAGGAGAGAAGATAACTTGCGAGAGACATATGCGCATCCACTCGGGAAAGAAAATATCGTGTGACATGTGTGATAAAACTTTCACCAGAATATGTGGTCTTAAGGATCATATTCGCATATCCCATGTAGGAGAGAAGATAACTTGCGAGGTATGcaacaaaaatttcagcacattaaCTTATTTAAAGGAGCACCAACGTGTCCACTGGGGTGAAAAGTTTTCTTGCGAGTTATGCAACAAAGATTTTGCACGTGCGTCTTGTTTGAAAAGTCACATGCGAATTCACACAGGGGAGAGGTTCTCTTGTGAGGTGTGCAACAAACATTTCAGTAGATTGTCTTATTTGGAAGAGCATAAACAAACCCATTCGGGAGAGAAGATCACATGTGAGAAACAATTTGGTCAAGTCGCTGCATCAGAATATGTGGTTGCTGATGAACTTGAAACTGCTACTGAAAGTTCGGGAGAGAAATTCACTTGTGAAGAATGCAACATGAGTTTCTCCACTGTGTCCCATTTTAAGAATCACAAACAAATGCATATGGCAGGAAAAAGACTTCGTTTCTCTTGCATGGTGTGCGACAGGAAGTTCACGAGGATGATCCATCTGAAGCAACACGTGCGTGTCCACAGTGAGAAAATATTCACGTGTGCAGTGTGCAACAAGGACTTTAAGCAACACTCTTCCCTAAAACAACATATGAATGAacatacagaaaagaaatttacttgtGATGTGTGTGACAGTAGTTTCAGTAGATTACCGTATTTACGAGTTCACATGAATATCCATTTGGGCAAGAAATTCCCTTGTAAGATTTGCAATAAAGTTCTGAGCTCGAATCCCAGTCTGCAGAGACATATGCGCATCCACTCGGGAAAGAAAATATCGTGTGACATGTGTGATAAAACTTTCACCAGAATATGTGGTCTTAAGGATCATATTCGCATATCCCATGTAGGAGAGAAGATAACTTGCGAGGTATGcaacaaaaatttcagcacattaaCTTATTTAAAGGAGCACCAACGTGTCCACTGGGGTGAAAAGTTCTCTTGCGAGTTGTGCAACAAAGATTTTGCACGTGCGTCTTGTTTGAAAAGTCACATGCGAATTCACACAGGGGAGAGGTTCTCTTGTGAGGTGTGCAACAAACATTTCAGTAGATTGTCTTATTTGGAAGAGCATAAACAAACCCATTCGGGAGAGAAGATCACATGTGAGAGAAGAAAGAATGCAAAGAAGCTCGCAGAAAATATATCATGCAATGAAAACAGTTTTAGTGCAAAAACtttgaaaacaatgaataaaatatttattttttatttattaacccagataaattacaaagaaaaaatcataatgaaatacaatttcaataaattgtaa
Protein Sequence: MESVRWENHGSHVLCLIGKLYQDMQFIDCTLDTEGGFIKGHTAILAACSPYLKKLFMDNKRIETVPLKEVKYKDMKLILDFIYYGEVVVPVTDVTSLVKTAQLLQIASLKTSLSQDVSGNLPHNITCEQSKCASEVTCEVDPMKNHEGDSSIRGNRETSCQDKLFEKEHNVGFSSENTDCNEEESNALQHVSDGIDDGGEPTDVSILQTRASKALEDDAATPYVSVKIEDPNESGVERNESNLEIQFESICDVSLLEIKAEKSFVSGLNSENVEEFDNEPPLLEPLCVFLKDEPEELEDVDNFQDETDTIHVSNASRVILKEVRVALERISLPGVDPSHQMGIGYDKLDFDETSGFLLRNALTSKEAVRPKNSSREDDSCRRMLQGDSVSDFEIKCEEQLSSHSDENIFLRHPCSSTFTPSCELKQDGRVHSADKPGLCIVNKSPVNKEDVFNTPLQTHAGEKLYICSFCEMSFNKESNLKRHMQRHTKEKLYQCIICEKSFSVNDSLKRHMRSHTGDKQFHCGTCGKSFVQGSHLKRHLLSHAGKKSTHGSIVCEKEASEEANDAHVSLSHPPGEKQLHSGICENASKEQSGFDTNVLSKEKSEQKQSSICENASKEQSDLNTDIVTHSRDKSYHCGVCDQSFKGKSNLTRHMRNHTGERPFQCSICGKAFNSFKEVYLLNRHIKSHTEDNVHQCTICQKTFSTKTAVKVHMRSHTGERPFLCSVCGKSFSVNDSLKRHMQIHRTVQKHYSCGVCDTSFQDRIAASENVVAEELETATESSGEKFTCEECNMSFSSVSHFKNHKQMHMAGKRLRFSCMVCDRKFTRMIHLKQHVRVHSEKIFTCAVCNKDFKQHSSLKQHMNEHTGKKFTCEVCDSSFSRLPYLRVHMNIHSGKKFPCKICNKVLSSNPSLQRHMRIHSGKKISCDMCDKTFTRICGLKDHIRISHVGEKITCERHMRIHSGKKISCDMCDKTFTRICGLKDHIRISHVGEKITCEVCNKNFSTLTYLKEHQRVHWGEKFSCELCNKDFARASCLKSHMRIHTGERFSCEVCNKHFSRLSYLEEHKQTHSGEKITCEKQFGQVAASEYVVADELETATESSGEKFTCEECNMSFSTVSHFKNHKQMHMAGKRLRFSCMVCDRKFTRMIHLKQHVRVHSEKIFTCAVCNKDFKQHSSLKQHMNEHTEKKFTCDVCDSSFSRLPYLRVHMNIHLGKKFPCKICNKVLSSNPSLQRHMRIHSGKKISCDMCDKTFTRICGLKDHIRISHVGEKITCEVCNKNFSTLTYLKEHQRVHWGEKFSCELCNKDFARASCLKSHMRIHTGERFSCEVCNKHFSRLSYLEEHKQTHSGEKITCERRKNAKKLAENISCNENSFSAKTLKTMNKIFIFYLLTQINYKEKIIMKYNFNKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00872378;
90% Identity: iTF_00872378;
80% Identity: iTF_00872378;