Lko_33882-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01126121.1:22311-23945[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0011 1.3 8.7 0.8 13 39 20 43 13 50 0.81 2 13 0.01 11 5.7 3.4 3 41 39 73 37 75 0.85 3 13 0.0052 5.6 6.6 0.9 16 41 79 101 75 103 0.84 4 13 0.0091 9.9 5.8 1.6 6 39 98 127 93 127 0.80 5 13 0.00044 0.48 10.1 1.4 19 39 128 145 127 149 0.90 6 13 0.04 44 3.8 0.6 18 41 155 175 149 177 0.84 7 13 0.019 21 4.8 1.6 6 35 172 202 167 204 0.73 8 13 0.00029 0.32 10.6 3.8 11 40 205 230 196 234 0.82 9 13 0.076 83 2.9 2.8 18 29 239 250 236 261 0.78 10 13 0.49 5.4e+02 0.3 2.5 11 39 261 285 251 289 0.70 11 13 0.2 2.1e+02 1.6 4.5 18 39 295 313 279 325 0.76 12 13 0.0085 9.3 5.9 1.8 15 41 328 351 316 353 0.85 13 13 0.00031 0.34 10.5 1.7 4 42 346 380 343 381 0.87
Sequence Information
- Coding Sequence
- atgCAAAAAGTCGtttattcaaaaagttcatcTGAAAAACATTGGCGAATATATACAGGGGAGAAGTCTTTCGAATGTCaaatttgtaaatctttattcagtGGAAGCAGTAGTCTCAAGAGGCACATTTTAACACATTCCAGGAAGAAACCttttcagtgtgaaatttgtgaatcctCATTTGACCGAAAATGTAATCTTTTGAGTCACTTGCAAACACATACTGGTTTGaaatcatttcagtgtgaaatatgtgaaaaatcatttaatcaaaaAAGTAAACTTGAAAATCACATccgaacacatactggggagaaaccttttcaatgtgagATTTGTAAATCCTCATTTAGTCAAACTGGAAATTTGAAAACGCACATGTGTGAATTATGTAAAAAGTCATTTAAGAGATCATCCAATCTGAAGACTCACATGCTAACACACACTGGGGTGAAAACATTTCagtgtgatatttgtaaaaaattatttagtttaaaaagtattcttaaaaCTCACATCCAAACACATACAGGGGAGAAACCTgttcagtgtgaaatttgtaaatcctcatTTAGTCAAAGCGGTTATTTGAAGACGCACATGTTAACACATTCTGGGGAGAAACAATTTaagtgtaaaatatgtaaaaaatcatttaatataacaagCTATCTTAAGAGGCACATGCTAACACAATCTGCGGTGAAACCATTTCActgtaaaatatgtgaaaaatcattcagtcaaaaatgtaattttaaaattcacattctaaaaCATACTGGCGAGACAccgtttcaatgtgaaatttgtgagtcTTCTTTTAGACAAAGCGGCCATTTTAAAAGGCACTTGTTAACACATTCTGGGGAGAAACCATTTCTCTgcgaaatatgtgaaaaattatttagaacatcATCCAATTTAAACACGCACATGTTAACACACTCTGGGAACCACATGTTAACACATTCTGGGGTGaaatcatttcagtgtgaaatatgtgaaaaatcatttagtctaaaaagttttcttaaaacaCACATCCGAACACATTCTAaggagaaaacatttctttgtgaaatatgtcaaaaatcatttagtttAAAAGGTAATCTTAAACAGCACATCCAAAGACAACGGAGAGAAAACCTTGcgacGGTTAAAGTCACTAGTTGCTTTAGTGTTCTCTTACCGGGGAAAAACTGTTTCAATGTGAAACAAGTAAATCAATTTGGGGAAAATATC
- Protein Sequence
- MQKVVYSKSSSEKHWRIYTGEKSFECQICKSLFSGSSSLKRHILTHSRKKPFQCEICESSFDRKCNLLSHLQTHTGLKSFQCEICEKSFNQKSKLENHIRTHTGEKPFQCEICKSSFSQTGNLKTHMCELCKKSFKRSSNLKTHMLTHTGVKTFQCDICKKLFSLKSILKTHIQTHTGEKPVQCEICKSSFSQSGYLKTHMLTHSGEKQFKCKICKKSFNITSYLKRHMLTQSAVKPFHCKICEKSFSQKCNFKIHILKHTGETPFQCEICESSFRQSGHFKRHLLTHSGEKPFLCEICEKLFRTSSNLNTHMLTHSGNHMLTHSGVKSFQCEICEKSFSLKSFLKTHIRTHSKEKTFLCEICQKSFSLKGNLKQHIQRQRRENLATVKVTSCFSVLLPGKNCFNVKQVNQFGENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872459;
- 90% Identity
- iTF_00872459;
- 80% Identity
- iTF_00872459;