Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.15 1.7e+02 1.9 0.6 10 29 98 116 93 127 0.72

2 8 0.0017 1.9 8.1 1.9 15 39 128 149 119 154 0.82

3 8 0.00012 0.13 11.8 1.1 16 41 157 179 154 181 0.90

4 8 0.00083 0.9 9.2 0.0 17 39 186 205 181 213 0.87

5 8 0.025 28 4.4 0.4 19 39 216 233 208 237 0.83

6 8 0.019 21 4.8 0.5 18 39 243 261 240 265 0.84

7 8 0.0034 3.7 7.2 2.8 2 41 256 291 255 294 0.79

8 8 0.0089 9.7 5.9 4.9 3 41 285 319 283 321 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.15	1.7e+02	1.9	0.6	10	29	98	116	93	127	0.72
2	8	0.0017	1.9	8.1	1.9	15	39	128	149	119	154	0.82
3	8	0.00012	0.13	11.8	1.1	16	41	157	179	154	181	0.90
4	8	0.00083	0.9	9.2	0.0	17	39	186	205	181	213	0.87
5	8	0.025	28	4.4	0.4	19	39	216	233	208	237	0.83
6	8	0.019	21	4.8	0.5	18	39	243	261	240	265	0.84
7	8	0.0034	3.7	7.2	2.8	2	41	256	291	255	294	0.79
8	8	0.0089	9.7	5.9	4.9	3	41	285	319	283	321	0.87

Coding Sequence: atACATAGATCAGCGTTCGCGCAAACTAAACCTTGTGAGGAGAGAAGAGAATCGGTGGTGGGAACTGGAAGTAATTTGTCACGTGTTGCCAGTTTGAACACGAAGACGCAGTGCAATGATCAACAATTAGTACCAAGGGATTTATTTCACTTGGACCACTCAGAGATAGGATGTGGATATAGTCTGACTGAAAATGTGCGAACACATTGTACcaagagaaagaattattcatgtattagatACAAAAAGTCGtttattcaaaaagttcatcCGGAAAAACATTGGGGAATACATtctggggagaaaccttttcagtgtgaaatttgtgaatcccCATTTAGCCAAAAATGTAATAACCACATGCTAACACATTCTGGTgtgaaatcatttaagtgtgaaatatgtgaaaaatcatttacgaaATCATCATCTCTGAAGACGCACATGCTAACACATTCTGGTgtgaaatcatttaagtgtgaaatatgtgaaaaatcatttaataaagcaaataatCTTAAGCAGCACATCCGAACACATACaggggagaaaccttttcaatgtgaaatttgtgattcTTCTTTTAGTCAAAGCAGCAATTTTAAACAGCACTTATTGACACATTCTGGGGAGAAACCATTTCTCTgcgaaatatgtgaaaaattatttagaagttcATCTGCTTTAAAAACGCACATGCTAACACACTCTGGGGTGAAACCATACCAGtgtgatatttgtcaaaaatcatttacaacatcATCCAAATTCAAGACGCACATGTTAACACATTCTGGGGTGaaatcatttcagtgtgaaatatgtgaaaaatcatttagtctaAAAAGTGTTCTTAAAACACACATCCGTACACATTCTAAGGAGAAACcatttctttgtgaaatatgtcaaaaatcatttagtttGAAATGTAATCTTAAACAGCACATCCAAAGACATAACGGACAGAAAACCTTGcgacgtaaaatt
Protein Sequence: IHRSAFAQTKPCEERRESVVGTGSNLSRVASLNTKTQCNDQQLVPRDLFHLDHSEIGCGYSLTENVRTHCTKRKNYSCIRYKKSFIQKVHPEKHWGIHSGEKPFQCEICESPFSQKCNNHMLTHSGVKSFKCEICEKSFTKSSSLKTHMLTHSGVKSFKCEICEKSFNKANNLKQHIRTHTGEKPFQCEICDSSFSQSSNFKQHLLTHSGEKPFLCEICEKLFRSSSALKTHMLTHSGVKPYQCDICQKSFTTSSKFKTHMLTHSGVKSFQCEICEKSFSLKSVLKTHIRTHSKEKPFLCEICQKSFSLKCNLKQHIQRHNGQKTLRRKI

Sequence clustering based on sequence similarity using MMseqs2