Lko_32998-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- bab2
- Assembly
- GCA_002313205.1
- Location
- NNCF01139842.1:22942-94177[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-07 0.0004 19.6 0.0 1 39 514 551 514 555 0.88 2 2 4.7e-06 0.0062 15.8 0.0 2 38 843 879 842 885 0.87
Sequence Information
- Coding Sequence
- atgttaccaTCTCAGCAGTTCTGTGTCAAGTGGAATAGTTACAGTAGTAATTTGCAGAGTGTATTTCCTCGTTTATTGAATAGTGAACATTTTGTTGACATTACTTTAGCTTGTGAAGGGCAGATGATCAAATGCCATAAGGTTGTTTTATCAGCATGcagtacatattttgaaaaattattggttcacaatccTTGTCAGCATCCTATTATATTTATGAAGGACATGAAACATTGGGAAGTTCAAGCTTTGGTGGACTTCATGTATAAAGGTGAGGTAAATGTGAGTCAAGAGGAGCTAAATTCTCTCCTAGTTGCAGCCGAAGCTTTGCAAATTCGTGGTTTATGTGGCTCTGACAGTGCAAATCGGCAGCAAGAAGGGTTGAGACAACCATCATCACCTTCATCCAAAGTTCCAAATGTATCATTACCGAATGATATTGTATTATCTGGGAGTACTTCTCTAGGGCCGGATAGCCCTCTTCAAAAGAAACGTAAATTACCTAATGATGACATAGAGCCTCTTCAGTCTGGTTTTGTGAGAATATCAGGAGTATCATCTCTTAGTGGCATGAAGACAAGTCCAGATTCAGCTCTTGGCTCTCAAGCTACTGGTGAACAGTTAAGGCCAGATGGAACACCAGATGAATTTGatgaagagttgaaagaaaagCTTATTAAACAAGAAGTTGACATGGAAGATAATTTTGTGGAAGGTGAAGGTGACATAGATGTTCAAGAAGATGAAGCTGTTGCAGAGCAACAAgagGATTCTGACAGTAATAATCGAGAAGATCATTCCAATCCATTACTTGATCAACCTGGCCCTTCTGGATTAGCTACAAATTCTGCAGAGAAAGCTGCTACAGGTGGAAGATGGACTGGGCCTGTAGCGACTGTGGTTTCATCTGAAGTGGAATTGCCAACACGTCAGCATCTGTCGAGTTTCACCCGGTCTCAACTCCACGAGATTCCATTTTCATCCAGCTGGTGTGGTAATGTGGCACCAACTACGAAACTATATTCAAATCAATCCCATTTACAACATAATGACACTCAAACCAAAGTGTATCCTGAAGCCACTAGAGTCAATTTTGGCCAGATACGGGTTAGAGAATGCTTCCCTTCAGCAGTACAATTGGAAAGTAGATGTGAAACTGATGCTGGGGTGAATGGTGCTTCTGTACATTATCCTTGCCCATCTACTCCTGGATCTTCTCGCAGTCAAATTTTCGAAGGATCTATTCATTCTGGTTCTCATTCAGTTAGACCAGTTGAAGTGTTTCCAAGAAGTGCATTTGAATGCATGAGAAGTGATTTAAACAAGAAGTTGGATAATAGGCAACCTGAAGTTTTACTTGATACTAATTACTCAATGCGATCTGATAGAATTGGTAGGCGTAGGACAGAGGAGGAGAAGGCAATGCGAAAATTAGAAATGGCTAGGTTGCGCCAGCGAAGATTCCGTGCCAAGATCAGACTTATGCGTGAAGCTGTTGAGTTTTCTTGGCTTCCAAAGGTGCGACCTTATCGCCAGTACTCTAATGACAACTTGTGGGCTGCTTTAATGGATGTGAAGCAAGGCGGTAGTGTATATCGTGCCTCAAAAGAACATGGTATTCCTCGCAAGACCCTTCGAAACTGGATGAAACGATGGAATATCAAGAGTGTGTATTCTCCCCCTGTTCGAAGGTCTATTCCACCTCTTTTAGACCCTCCTATTGGTGGTGAGATTAGCAAGGGCAGTGGTGTTACTTTGACACCAGTAATACCACCTGTAAATTCACCAAATCGATCACCATTTGACATGAGGAGTAACTTGGGAACCCTTTCAGTCAGTGGGGTTACAATTGCTCCTTCACCTTCTGCATTCTTAAATACTCCTGTTGGAAGAGGTAGACAGAGTGCACGATGGATGCCAGGCTGTGAACTGGAAACTAATAGTGGTGTTGTTATTTCTCCTGCAATTCCATCTATGCTTGGGAAGTCTGAAACAGATATTCATCTTGGATTTAGAAAAGAACTTCtactatttattttaccatattcTTGGAATATTTGgcatgaaggaaaaataaaaaaaataaataatCCATCAGTCCAAGTTTTTCTCTGTtcacttttgaatatttctctcaaGAAATCATCAAATATttATGATAAAGATAAGTCTCTTCAgtattgtttttgtgtgtgtgcatatatgtatgtattaatgtatgaTGGTAGAGtgacatttattatattttttATTTTGCCATGGAATATTTCTGAGTGTTGGGGAAAATTACAGGCCTTTGGTGATAGTTTTTCTGCTCAATACTTAATGTTCCTTGAATATGTGGTTTCGTATATACGTGAAAAATTAAATGCTGCATTTGCTCTTCAAAATGTGATGTGTGTTTTATCTCCATCACAAGCTGGCAAGATTCCAATAATGCCTTTCCCAAACACTCCAGAAACAAAAGAATATGTTACTCTTTCTTCCCCTGGATCTGTACCTGGCGCTACAAGAGTTCGGCGATCAGAAGCAGAACTAAGAAAAGCGGCCGAATGTGTTCAGAAAGGAATGACATTCCAGAATGTCTCGGATGCCTTCAATATCCCGATTTCAACAATTCGGTTCTACATGGCTCAGGCAATAATGCCCAGTGAATGCATCACTAATCCCTTGCAAAGGGAACTAGCTGACAGCATCATTCGTATGGTTCCTCTGGATGAAATTAGAATTCTTTTGGCATGTGGAGCCAAAGTGAATGAACCAGTCACACAAGGTCTACGTCCTTTGCATTATGCGATTTGGCAGCGTTATGCAGAAGCTGCACGCCTTTTGTTGGTACGAGGAGGAGATGTGAATGCAAGGGATGAATGTGGTTACTCAGCTTTGCATCTAGCTGCAGAGCATGGGTATGTCGAATTGGTCACCCTTTTGTTGAACCAAGGAGCTCGAGTTGACTACAGAGAAGATAGTGATGATCCCTTTCCAAGAACCATGTTGTGTGACGAACCTCTTCGTTTAGCTATTCGGAATCGACATGCTGAGGTGGCTCGATTGCTTCTAGAACATGGAGCAGATCCaaataagagatatttttttGGATCAGAAATAAATTTGGTATCTCCATTAGATTTGGAATTCATGCAGTTACTTTTGACGTTTGGTGCCAACCCTGATACAAGAGATCGTGCTGGACTTACTCCTCTAATGAAAGCTGCACGTCTCCCTCAGGGTATCGACTCTGTACTATTGCTCATATCATATGGGGCTGATGTCAATGCTCTAACTGATGCACGCCATGATTATCGAACTGTTCTTCACTACGCTGTCCTGTCGGGGAATTTAGACACAGTTAACCTGCTTTTAAAACAAGGAGCAAGAGTTAATTATTCAAGTGAATACCAGAAGCCATCTCCTCTAGATTTGGCAATTCTAAAAGGCGATCCAGAGCTGGTGAAGTTACTTATCAATGCAGGAGCTAATGTTAACTCTAGTTCGCCTATAATAGGAACTCCACTTCACGTCGTATGTGCTGATAATATTCCGAACCGTATGGAACTACTTCAGTTACTGCTTACTCATGGCGCAGACCCGAACGTTGTGATCGACAGCGATGAGGGCACTCCTCTACGTCCCGTTCTTGCAGAGTACATTGCATCCAATGAAGAGCCCTGTCCAGCAATTCTTAACATGCTACTTAGATATGGAGCAAAGGTTGTTATGAAAACTCAATTTCGAGACCCACATGGAATACTGAATTCTCTCCACAATTTGTCGAAAAGCCCTTCAGTGTTTGTGAATCTTGTAAGAGCTGCAGAAAGTTTTGACTTGTGTATGATCAGAAGATCATCTACCTTAACTCAAGAACAGAAGAACATTTTAATGGAGTATTCCAAGCAGCCATTATCATTGAGGCACCAAGCACGTCTATTTATAAGACGCTTTTTAGGAAAGAAAGGTCCCAATATTATTCCTGAGCTGCCTATCCCTATTGTTTTGCATGAGTACTTGCTGTATCATTTTAGTTAG
- Protein Sequence
- MLPSQQFCVKWNSYSSNLQSVFPRLLNSEHFVDITLACEGQMIKCHKVVLSACSTYFEKLLVHNPCQHPIIFMKDMKHWEVQALVDFMYKGEVNVSQEELNSLLVAAEALQIRGLCGSDSANRQQEGLRQPSSPSSKVPNVSLPNDIVLSGSTSLGPDSPLQKKRKLPNDDIEPLQSGFVRISGVSSLSGMKTSPDSALGSQATGEQLRPDGTPDEFDEELKEKLIKQEVDMEDNFVEGEGDIDVQEDEAVAEQQEDSDSNNREDHSNPLLDQPGPSGLATNSAEKAATGGRWTGPVATVVSSEVELPTRQHLSSFTRSQLHEIPFSSSWCGNVAPTTKLYSNQSHLQHNDTQTKVYPEATRVNFGQIRVRECFPSAVQLESRCETDAGVNGASVHYPCPSTPGSSRSQIFEGSIHSGSHSVRPVEVFPRSAFECMRSDLNKKLDNRQPEVLLDTNYSMRSDRIGRRRTEEEKAMRKLEMARLRQRRFRAKIRLMREAVEFSWLPKVRPYRQYSNDNLWAALMDVKQGGSVYRASKEHGIPRKTLRNWMKRWNIKSVYSPPVRRSIPPLLDPPIGGEISKGSGVTLTPVIPPVNSPNRSPFDMRSNLGTLSVSGVTIAPSPSAFLNTPVGRGRQSARWMPGCELETNSGVVISPAIPSMLGKSETDIHLGFRKELLLFILPYSWNIWHEGKIKKINNPSVQVFLCSLLNISLKKSSNIYDKDKSLQYCFCVCAYMYVLMYDGRVTFIIFFILPWNISECWGKLQAFGDSFSAQYLMFLEYVVSYIREKLNAAFALQNVMCVLSPSQAGKIPIMPFPNTPETKEYVTLSSPGSVPGATRVRRSEAELRKAAECVQKGMTFQNVSDAFNIPISTIRFYMAQAIMPSECITNPLQRELADSIIRMVPLDEIRILLACGAKVNEPVTQGLRPLHYAIWQRYAEAARLLLVRGGDVNARDECGYSALHLAAEHGYVELVTLLLNQGARVDYREDSDDPFPRTMLCDEPLRLAIRNRHAEVARLLLEHGADPNKRYFFGSEINLVSPLDLEFMQLLLTFGANPDTRDRAGLTPLMKAARLPQGIDSVLLLISYGADVNALTDARHDYRTVLHYAVLSGNLDTVNLLLKQGARVNYSSEYQKPSPLDLAILKGDPELVKLLINAGANVNSSSPIIGTPLHVVCADNIPNRMELLQLLLTHGADPNVVIDSDEGTPLRPVLAEYIASNEEPCPAILNMLLRYGAKVVMKTQFRDPHGILNSLHNLSKSPSVFVNLVRAAESFDLCMIRRSSTLTQEQKNILMEYSKQPLSLRHQARLFIRRFLGKKGPNIIPELPIPIVLHEYLLYHFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872354;
- 90% Identity
- iTF_00872354;
- 80% Identity
- iTF_00872354;