Lko_20623-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- bab2
- Assembly
- GCA_002313205.1
- Location
- NNCF01128770.1:107814-116954[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-14 1.8e-11 43.1 0.1 3 45 459 501 457 501 0.92
Sequence Information
- Coding Sequence
- atgtttgttgagATTCGTTTCATTCGAATAAAGCGTAtctATAATTCGTTTGAAGTTTTTTGGGGTCTGGAAAGTGAACAAAAaaGTCTGTGGAATGCACGAAGGAACTTCTTGCTGGCCGGAGACGTGGCCTCCCCGTGGGAATCTCGTCGTGAGGAGCTGGCTGTGGACGAGGGCCGTCTGGGCGAAGTGCCTGGACTAGGTGTGGGGATGGGTAGTAGTGGAGGAGGTGCCACCACTGGCAACATGCAACAATACTGCCTACGGTGGAATAACCACCGCTCTAATTTACTGAGTGTATTTGATGATCTTCTCCGAAGTGAGGCTTTCACTGATGTGACCTTAGCCTGTGAAGGTGGGGCATCAGTTAAGTGCCACAAGATGGTGTTAGCTGCATGCTCCTCATACTTTCAGGCGTTGTTTACTGAGTTACCATGTCAACACCCAGTTGTTGTACTCAAAGATGTAAAATATGGAGAGATGAAAGCGATTTTAGAATATATGTATAGAGGAGAAGTGAATGTAGCTCATGATCATCTAGCGGCTCTCCTGAAGGTTGCTGATGCCTTAAAAGTAAAAGGCTTAGTGGCTGAAAATGGTCCTCTGACAAGCACTCCCAACAATAAGGTGGAATCCCGACGAGATGAGGAAATGTCATCTCCTCCTCCAAGCATCACCACCTCCACATCAAATGCATCTCCTATGCCTCACAGTAGTAGTGGTGGAGCTCTCTCCCCCCCATCATCACACTCTCATTTCTATAAGCGTGGACTCCCTGCCAGTCTCCCACCACACGGATGGCCTCTAGGAGCTGGCCTCCCACCAAGCCTTGCAGCACCTCCTTCAGTTGCTGCTGCCTCAGTACCCACCCCTCCCCCTGCAGGATCTGGACATGTAGGTCATCCTCACATGagtgctgctgccgctgctgcagCTGCAGCAATGCTCAACAGTTTTGAACATGATCTCCATCCTCTGAAAcggaaaaaattacaaagtttgcTGCTTGGTGGTCGATCTGGAGGCTCTGATACTCCAATTTTACGCACTGTTTTGGGCCAAGGTCAAGCTGATTCCAGCCAGCCTATGTCTTTGGTTTGTCAACCAGACAGTCATGAACGAATTCACTCAAATGGTTCTGCTCATGATAATGACAAAACAAGTGTCAAGGCTGAACAAAGTCTGGAAGAAGCTCGTTCTCCATACACTGATATATCTGGCTTAGAGGATGAACATAATGAGAAGgGATACTTCAGGTCCTCAGTGTTGAACCAGTCCTTCCCTGGAACCACAAGAGCTGCTGTTACTTCTGGCATCGCAACATACGTGCCGACTCAGAAGCCGGAATGGAAACGCTACAAGCAGTATACTCGTAACGACATCATGTCCGCAATCGAAGCGGTGCGCACTGGTATGAGTGCACTGCAAGCTGCTCGTAAGTACGGTGTGCCATCACGCACACTCTATGACAAAGTGAAGAAAATGGGAATCACCACCAGTCGCCCATTCAACAAACGTTCCAGTGTAGCACAGGCCGGTTACTTTCCGTATGGTACTGGTAACAGTGGTGGCAATGGCGGAATTGCCGGAGGCGGTGGCACGTACGGGGGCGGTGATCATGACGACGGCAGCGGCGGCGTGGCGGAGCCACTCTTTCTGCAACACACGCTCAAACAGGAGGCTCGCAAGCCTGTACCTCCCCCATCACAGGCTCCACCGCCCTCGCAGACTCAGCCACTTcaagcgccgccgccgccgccgccgccgcagcctaGCCCTCCTCAAGCGCCGCCGGCTCTGCCTCCCGCCGCCTGCAACAGCCTTCGTGTCATCGTGCCCACACCTTCACACGCCGTCAGTGAGGAGCGACGTCGCGGCGATTCTCCCGAGCGCACTGCAACTGCAGCCGCGGCCGTCGCTGATCGTGACTGA
- Protein Sequence
- MFVEIRFIRIKRIYNSFEVFWGLESEQKSLWNARRNFLLAGDVASPWESRREELAVDEGRLGEVPGLGVGMGSSGGGATTGNMQQYCLRWNNHRSNLLSVFDDLLRSEAFTDVTLACEGGASVKCHKMVLAACSSYFQALFTELPCQHPVVVLKDVKYGEMKAILEYMYRGEVNVAHDHLAALLKVADALKVKGLVAENGPLTSTPNNKVESRRDEEMSSPPPSITTSTSNASPMPHSSSGGALSPPSSHSHFYKRGLPASLPPHGWPLGAGLPPSLAAPPSVAAASVPTPPPAGSGHVGHPHMSAAAAAAAAAMLNSFEHDLHPLKRKKLQSLLLGGRSGGSDTPILRTVLGQGQADSSQPMSLVCQPDSHERIHSNGSAHDNDKTSVKAEQSLEEARSPYTDISGLEDEHNEKGYFRSSVLNQSFPGTTRAAVTSGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRTGMSALQAARKYGVPSRTLYDKVKKMGITTSRPFNKRSSVAQAGYFPYGTGNSGGNGGIAGGGGTYGGGDHDDGSGGVAEPLFLQHTLKQEARKPVPPPSQAPPPSQTQPLQAPPPPPPPQPSPPQAPPALPPAACNSLRVIVPTPSHAVSEERRRGDSPERTATAAAAVADRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00759209;
- 90% Identity
- iTF_00872343;
- 80% Identity
- iTF_00872343;