Lko_27633-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- lov
- Assembly
- GCA_002313205.1
- Location
- NNCF01127317.1:165817-192900[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-18 2.4e-15 55.5 0.0 1 44 445 488 445 489 0.96 2 2 10 1.3e+04 -7.1 3.5 6 15 670 679 670 680 0.83
Sequence Information
- Coding Sequence
- ATGGAGCGGCAACGAgaactgtgctcgccggaaacaCATTGTGAGTTCGGCGTAGTGGAACGAAGAAGACCACGGTCGGCGGTGCCGCTGACGCCGCCGCTGCGGCTGCTGCCACCGTCGCCGTTGCGCCTCTCTGGCCGGTGCGCATTCTGCCTCGCCGACAATGGCGCGAAGGTGACGCAACAATGCGATACATGCAGGGTTCCAGTCATTCGCTCTCGCACGATGACGTGTGTGGATTGGTGTGATTCATCGAATACTTGCGACTTGCTTGGTTGTGTGGGGAATTGCAACGGCAATGTGGAAGTGAACTGGAAGGGAGTAGCGTCATGTGAGCGTTACACTCAAGCTATTATCATGGCATCCTCACGATATAGTCTGCGGTGGAACAATCACCAAAATCACATCCTCAGTGCTTTTGACACACTGCTGCAAAATGAAACCCTTGTGGACGTGACGTTGGTTTGTGAAGAAGCCAGTGTCCGAGCACATAAGGTGGTTCTCTCAGCTTGCAGCCCTTACTTCCAGCGAATATTCTCTGAAAACCCCTGTAAGCATCCAGTGATAGTGCTGAAAGACTTGAGAGGATGGGAAGTGCAAGCCATTGTGGACTTCATGTACAAGGGAGAAATCTGTGTTGTGCAGGAGCAGCTTAGCTCTCTTATCAAGGCAGCTGAATCTCTACAGCCGTCTCTGTCCTTGAAGATGGAAGCCGAAGATGCGCTGCAGCAGATGGAGAGCGCTCGCCTCAACATGCAGACGCCGGACCGCGAGCGCGAGCGGGAACATCGCGACAGGGAGCGCGACCGCGAGAGAGACAAGGAACGCGAGCATCGGGAGCGCGAGCATCGGGAGCATCGAGAGCATCGAGAGCGCGAGCATCGGGAGCAGCGGGAGCGGGAACGGGAGCATCGGGAACAACGCGAGCGGGAACGGGAGCATCGGGAGCGCTGCGAGAGAGAGAAGGAGCGGGAGAGGTACGATTTCTGCAACAACGCAGAGTCGCTCAGTCTGCCGGTGCATCCCTCGgaCTCTCTTGACAGCTCAAATTTTGCCCATCTGCCCTCTGTATCGGCATTATCTCTAACACCACCCCATGttttctctcTCGACTCACAGCTCGGGTTCTTCCCAAGTATGGAAAGTTGCCGGAATCCCTTATTAAACGACCTTCCAGAGCCCCGAAGTGAGAACCATCATATAATAAGCAAGCGGAAAAGTAAGGGTACTAACGATTTTCGTGGCTTTTCTATGAGGAATAAGTATTCGTCACACGTCGGCCGCCCCAAGGGCCAACACAGCGCCCCTCGCGGAGGACCCCCGCGCTCCTGGACGAACGCGGAATTGACGGAGGCGTTGCAACACGTGTGGAACAAGAAGATGACCACTTCGCAGGCTTCGCGTATCTTCGGGATCCCTTACAACAGTTTGCTGATGTACGTGCGCGGCAAATACGGCAAAAGTCTGAAACTGGAGCAGCTGAAGAAGGATTGCCTAGGTAGTCCCGGAGGCCCTCTAGAGCTCTTGGGCCTGGGTCCGATGAACAACCCTCCTcctaacaataacaacaacaataataacaacaacgcGACCGGTAAGTCATCTACCCCAGAGGAAATGCTAGGACCTCCTTGTTCAGAGCAGGATCTCGTCTCGGTAGCGCCGGGTTTCAACCCGTACTCGGCCGCCAACTTCTACCCGGATTTCGGAGCTTCGTTCCCGGTGCCGGTGGGCATGATCCACCTGCTGCCGCAATCGGAGAAGAACCGGGAGATCTTCAACCCTTCGATGCCTCTCCCGTTGGACATTGGCTCTGTGAAGCGAGAGCACGAGCGAGCCGAGAGGGAGAGGGAACGGGAGAGAGAACGCGAGCGGGAGCGCGAACGGGAGTGCGAGAGGGAACGGGAGAGAGAGCGGGAACGCGAGCGGGAAGAAGACGCGAGGAGCAGTGGCAGCAGCGGGAGACGGTCTCGCGACAACGCCGCCGTCgccgcggcggcagcggcagcagcagcagcggcggccgTCGCCGTCGGCGCTGGCGCAACGCCCGAGGTGAAACTCGAGGCCTCCGCGCTGGCACCTCCGCCGCCGGCGCCGCGCGACGACCCACCGGCGACGCTCATCGAGCAGAACGGACAGAACTAA
- Protein Sequence
- MERQRELCSPETHCEFGVVERRRPRSAVPLTPPLRLLPPSPLRLSGRCAFCLADNGAKVTQQCDTCRVPVIRSRTMTCVDWCDSSNTCDLLGCVGNCNGNVEVNWKGVASCERYTQAIIMASSRYSLRWNNHQNHILSAFDTLLQNETLVDVTLVCEEASVRAHKVVLSACSPYFQRIFSENPCKHPVIVLKDLRGWEVQAIVDFMYKGEICVVQEQLSSLIKAAESLQPSLSLKMEAEDALQQMESARLNMQTPDREREREHRDRERDRERDKEREHREREHREHREHREREHREQREREREHREQREREREHRERCEREKERERYDFCNNAESLSLPVHPSDSLDSSNFAHLPSVSALSLTPPHVFSLDSQLGFFPSMESCRNPLLNDLPEPRSENHHIISKRKSKGTNDFRGFSMRNKYSSHVGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLKKDCLGSPGGPLELLGLGPMNNPPPNNNNNNNNNNATGKSSTPEEMLGPPCSEQDLVSVAPGFNPYSAANFYPDFGASFPVPVGMIHLLPQSEKNREIFNPSMPLPLDIGSVKREHERAERERERERERERERERECEREREREREREREEDARSSGSSGRRSRDNAAVAAAAAAAAAAAAVAVGAGATPEVKLEASALAPPPPAPRDDPPATLIEQNGQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872364;
- 90% Identity
- iTF_00872364;
- 80% Identity
- iTF_00872364;