Lko_02833-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- ttk
- Assembly
- GCA_002313205.1
- Location
- NNCF01126014.1:24879-59282[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.6e-08 6e-05 22.2 0.1 1 36 308 343 308 349 0.90 2 4 0.0042 5.5 6.3 0.1 24 37 371 384 360 390 0.87 3 4 0.027 36 3.8 0.0 20 36 421 437 410 445 0.82 4 4 8.1e-14 1.1e-10 40.7 0.0 4 38 466 500 463 503 0.94
Sequence Information
- Coding Sequence
- ATGTGCAAGCATATTCATGCACTTGTTTCCAATATTGGAAAGCCAGAAAGTGTGGATAGTAACCCAAATAAAGCTACTGATTCACCTACTTTGCATCCATCAGATGAGGAGTATTGTCATTGCAACTGGAGGAGCAAAAGAGAACGTCAAGAACCGCATTGGAAAAGTAAATGGTGCCTTTGTCCAGCTGTATCCTGTTTGGAGTTACAGGAACATCTCTTGGAGGACGAAGCTACGActtttaacacaaatgttaaaattcgtaGTCCAAGAGGAGCAACAGGAACTAAGTTAAGTTACCCGAACTGTGACATGGATAAAGAGGAACACTGTGTAAAATGGAAGGATTACAAAAATCatattacacaattatattttcatctttttgaaACTGAATCTATGGTGGATGTAACATTGTGCGCTGAGGGTCAGTACATCAATGCACATCGTATTGTACTGTCTGCGTGCAGCTCATATTTGAAGGCTATTCTGTCAAGTTCTGGAGAATCACATCCATTCATTATTCTGAGTGAAATGAAGTTTGAGGATGTGAAGAGTATCATAGAATTTGTTTATCGAGGAGAAATTAGTCTTCCTGCTGACCGCTTCATGACTATGTTGAAGACCGCTGAAGATTTACACATAAATGGGCTCATGGAGGTTGTCCATTACTTGCCTGATGTTGGTAATGAAGATGGTAATGAGGTGACGTTGGAGGTGTGGGATGCAATTGAAGAATCATCTGAATTATCAGTCTGTCAGAATGTCAGTATTTATATAGACCCAAATGATGCATCATTTGGATCGTCTATTAATTCTGTCTCTGGACAAGAACCATCTGAGGTATTAGTAGTCACAACAGACAGTAATAGACCAAACAGAGccaagaaaagaaagagagaaagttCCAAGAAAGAATATACTGAGGAAGCTCTAGCTGCAGCTCTAGAAGACCTCAAATCAGGCAAATCAATGCTAGAAGCATCTATTGCACATCACATTCCTCGTTCAACTCTCTATGTTCGAGccagaaatcaaaatatttcaatagctCCTTGCCGACAAGATCATCCGTATGAAAAAATACAGGCAGCTCTGAAAGCAGTGTCTGatttatttaaaataccaaaaactgTCCTATGGAGACGCGTTCATAAAGATGCTCATAATTCGTCTGTAAAGCAAGTAAAGCATAGAGAAGCTTGTGGCTTTGAGAGAAAGAGTGCTGCAATAATGGCTTTGGAAAGAGGAGAAAAGATCTCCAAAGTCTCAATGCAGTACCAGATTCCTCGGACTACATTATTCAGGGAAAAGACTCGTCTCGTGGAGTTGGGTAAGCTGCCATGGAGTAGTCAAAAGAAGCGACTGACAAGTTCTgatgaatataaagaaatacgGCTTCATGAAGCAGTTGCTGCATGCAGAGAAGGAAAAATGTCACAAGCCACAGCATCACAGAAATTTCAGGTTCCCAAAACTACCATATGGAGGAGGCTTAAGGATTCAAGACTTCATGATAGTTCTACTGTGGGTGTAGAAAAGAAAGCAAGCTCTGTTGAGAATCTCCCACCTGTAGGAAATGATATTCATCATCCTGGCCCCCTTGGTATTAAGTTACTTGGGGAATATTTACAGGTATCTACTCATATGCCTGTTACTTACATTGGTGAAACTAACTTCGCAGATTCTTCTTTGATTATTCTCTCTACCACTGATGAAACTGGAATTGAATTGCAAGGAAATACTCAACTAATTATTGAACCTATGAATTGTGTTACTCACTTGTTTTCTTTCTGCTAA
- Protein Sequence
- MCKHIHALVSNIGKPESVDSNPNKATDSPTLHPSDEEYCHCNWRSKRERQEPHWKSKWCLCPAVSCLELQEHLLEDEATTFNTNVKIRSPRGATGTKLSYPNCDMDKEEHCVKWKDYKNHITQLYFHLFETESMVDVTLCAEGQYINAHRIVLSACSSYLKAILSSSGESHPFIILSEMKFEDVKSIIEFVYRGEISLPADRFMTMLKTAEDLHINGLMEVVHYLPDVGNEDGNEVTLEVWDAIEESSELSVCQNVSIYIDPNDASFGSSINSVSGQEPSEVLVVTTDSNRPNRAKKRKRESSKKEYTEEALAAALEDLKSGKSMLEASIAHHIPRSTLYVRARNQNISIAPCRQDHPYEKIQAALKAVSDLFKIPKTVLWRRVHKDAHNSSVKQVKHREACGFERKSAAIMALERGEKISKVSMQYQIPRTTLFREKTRLVELGKLPWSSQKKRLTSSDEYKEIRLHEAVAACREGKMSQATASQKFQVPKTTIWRRLKDSRLHDSSTVGVEKKASSVENLPPVGNDIHHPGPLGIKLLGEYLQVSTHMPVTYIGETNFADSSLIILSTTDETGIELQGNTQLIIEPMNCVTHLFSFC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872370;
- 90% Identity
- iTF_00872370;
- 80% Identity
- iTF_00872370;