Lko_32451-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- MDP1
- Assembly
- GCA_002313205.1
- Location
- NNCF01126283.1:30621-62019[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-16 4.2e-13 48.3 0.0 2 44 947 990 946 991 0.95 2 2 4.1e-09 5.3e-06 25.6 0.0 4 37 1142 1175 1140 1177 0.93
Sequence Information
- Coding Sequence
- ATGCCCCAAACGTTCGATGGCTACAGTGATTGTGATTCCAATTGGACAGTTGCATCGCGAGATGCTCATCTAATTAAAGATTTAGCTGAACATTTGGGATCTCCATATTGCAAAAACTACGACACATACACAAATCCTTATCAAGAAATACTAAGAGGACGAGCAGATGTATTTGGATTTGCGATGTACGTGTTACATCATCCCAACATTCGATTCACATATCCACACATGCAAATGGATCTTTGTGTTCTCGTTCATCGACAAATGCCCTACAGACAAACGATTTCCAGAGCTTTCGCCGTAAACACGTGGGCGCTTACGGGCGTCGCCCTTCTTTTGTTCGTAATCCTTTTTCACGTCTTGGGGAGAAGACCAGCTCCTCTTCACGTATTACGAACATCTGTGACTGGAATGTTCTATGAAAGTCATGGCCGTCCATTGGTGAACTACACGGGTTTAATACTCAGCGCATGGGGAATGATAATCGTCACAGTCTTTGTGGGACGTTTTACAAGTTATTTGACAGTTCCACACACAGCGACACAGATGGACACTTTGGAGGAAATAAACTCGAAAGTCACGAAAGTGTATGGCGAAActggagaaaacattttcaatgctCTTGATGAAAACGACGTGGTGAAACAGCTCTTGGGAAAAACCAAAGAACCGACGGACAATGACAATATAGTTCGAGAGGTCGCGATGTCTCCTAACGTCGCAGTGGTAGCATCAGAGGAGCACCTTCGTCTCGAGCAACTCTTACAAGAGTCGAAAGATGAAGACGGACGAGCTCTGACTCATATTGCGAAGCAATGCATCCTCTCACCAGCATATCAAGGATTTATGATGAGGGCGGATTTTTCCGTGGCAGACACATTCAGTCACTTGGTGCAACTCATGGTCCAAGCTGGACTTGTTCAAAAGTATGATAGATATGCGCCGGAACGAGGCAGCTTTATATCTGAATCCTGCAAGATGGACAAGTTGGTTATGGCGAAAAAAATGGATTTTGATAGAAACCAAAGAGGAGTATCCTGTGTTCGAAGGAAGCTTGTTGACTCCTTCGCCAAGCGGGTAAGAGACAGTTTCAAAGAGGCCAGTAAATATTTTCCAATACCCGactacaatgaaattaaacgaaCGACGGAAGTGGAATCCTCCAAGAATCCTAAACCTCTGCACTTGTCGGCCATTGCGGAACCGTTGACGCTTCTAGTACACAAAGCAGGTATTGTAGCTCATGGTCCTCCTGGTAACACTGTATCAAGTATGCAGACAAAGAAACTTTTAGCGAATTGTCTCCAAACTTCTCGTATAAAGAAGTTTGGGACGTTCTCGACCACAACACGttttgcaTCGTTTCTTGGTGAGATGTCATCTGGAAATCGCAAACCTAAGTTGATTGTTTTTGATCTGGattaCACATTATGGCCATTTTGGGTGGATACTCATGTTACTCCTCCCTTTAAAATAGAGAAAGATGGGAAAATAGTTGATCGATTAGGGGATGTGATAAAGTGTTATCCTGAAGTTCCTGAAGTATTGGAGAAATTAAAGGAAGAAGGATATTCTTTGGCAATTGCATCTAGAACTGGAGAAATTAAAGGAGCAAATCAGTTAATTAATATGTTTGGGTGGAGCAAATACtttgaatacaaagaaatatacccTGGTACTAAGGTACAGCATTTCAGTAGATTTCAGCAGCAATCTGGTTTATCTTACTCAGATATGCTTTTCTTTGATGATgagcaaagaaatataaatgatttgACTGCTGTAGGAGTAACTTCCATTCTAGTAGGCAATGGTGTTACTAACAAAGTAatTAATCATGTCCATCCAacaattttgtttacTGAATCGTTGGTTGATGTTACTTTGGCAGCAGAAGGCAAACACTTGCAAGCCCACAGAGTGGTTTTATCTGCATGTAGTTCATACTTTCAGACAGCAGAAATGCTGAAAATCAAAGGTTTAGCAGATACTGAACAACACATTTCAAGCTCTGTGCATATGACTAAATCAGAGAGTGCTTCTTCAGATAAAGCAGAACTACTTACCCCTGGTGACTCAACTTGGGGATCAGATTCCGCTAGGAGAAGTCCATCACCCATGTCTCCATCCTTACGTAGAAAGAGGTTTCGTAAGTCTTCCACAGGATCAGGGTCTGGGTCTACGGAGAGGACATCTGAAGAAATAACTAGCGAGTTATCTTTAGGAGTTACCCTGGTTAAACCTGAACCTGTGTCATACACACCTGAGGCTGAAAGTGGTGGTCGGAGTGACAGCTCATTGAGAAATAGCACCCAGGAGCCTAGCACAGATTCAGAACCTAGAGATGGCTCTCAGGATAGTACTGAAGAAGATCCTTTAGcaatgCATATGTCTCATGACAGTAGTGCTGGTATTGAAACACAGATAGCAGACACTGGGCCTGGTCCTTCTACTTCGCAACAGAGTTTGGCTTCCCAAGGCTTACAGTGGACGTTGCTGGAGCATGGTTACCCTCGCTTTGCACTGTCATCTTGTCAAGCTACTCTGTCAGTTCAAGCCACATCTGCCTTCTGTACTCCTGATCCCCCTTCAAATGCTTCGCAACCTCGACGAGAAGGTGCCCAGTACTCCAGCTCCACATATCAGGCTCATCAAATGTTGCCTATGTCCTCCTGTGCTGTCGTAGGTACTTACGGACATCCTTCTTCCTCATCGAATAGTCCTTATTCAAGTTCCTATTCCAATCCTTGCACTAGTCCCTGTATTAATCCCAACGTCATTAACATGTCTGGTCAGAACCCTCCTATTCGGCGCAAAAGGAGTAGTAATCCACAAGCGGACGAAAATTTTGTGAGAGCTCTAGAGGCTGTTCGTTTAGGTGGCATTGGTTTCTGCAAAGCTGCTCGTATGTTTGGTGTAAACAACAGAACTTTGTGGCTTGAGTACAAGAAAAGGGGTTACCCTGTTACTAGACCCAGTCCAAGTGTTAAGTCTCGCATCAAACAAGAAGTTGCGTCTTCATCTTCTGCTACCCAGCCTTCGACCAACCGACCGGTGTCTTCCTCTGCAAATGTACCAGTGTCATCGTCCTCTGCTATGTGTCCTCCCGCAGTTGCTATGGTAGGAAATTTCATAGATTCTCGTCATGCTGACTACTCTCACTCCCAAGCTCCCTCCTCTCCCCAGAACAGATTCCAAGAAGTCGCGGAAAATCTTACTCCTTCTCCTGCAAATCTTTCTGgaGTCTGGGAATCCTTTAAGAATCCCAACATCTTTCAGGATCTTAGCTTACGATCACCAGTATCAAGGAGCTTCGCAccatttacattttcattgtcCAATCAATCGAGTTCACCTCGAGCAAAGCTTTTAGAAACAGCTCAAGGCAAGAAACTCATCGTCTGCAACAAGGAAGTACCAGTGAATATGCTTAGAGCAATCCGTGCTGTTTTACTTCAGAACTGTTCAATTAATAAAGCAGCAATTATGTACAAAGTATCTCAATCTACTCTGTGGCGTTATGTTGGCCTCCTACCTATGTGTCTCGGAGAGAGGGATTTGCGGGACTTCATCACTAATGTTGTTCCAATGAAAGAACCATCTCCTGTCCCCACAACTTGTGTACCTTCAAGTAAACCGGGAAAGCGTGGTCGTCCATTAATCCGTCAACCTCGTATCAAGAAAGAAACTGACCCAGTTCACATGTCTCCAGAAAGTGAGCCAGGCTCGCCTCAGTTCAGTTCTACCTCCCTCCTTACTCTACCAAATGTTCGTGTTGAAAGACCGTATACCGACTCTCCACCCACGTCTCTTACCTCCAATTTGCTGACTGTTCCACAGCCAGCGTACCTCGTGAAACAGCATTCAGATCCTCTGATTCCAACTCGGCACTCTTCAGGCACTCCGCCTCCCACTGCACTGGTTGTTCAACGACAACTTTCACAACCCACTCCTGGTCAGACATGTGGAATTCCCCCACCTTTTCAGGTACACTTAGTATCGGATTCACATCATCAGCCTCCATCTTCAAAGCCAGCCGAGACTACTGTGCGAACTATCAGCCCATCAGTGGTAATCGAGCCACTACCTGTTTTAAGAGTTATTAGTGAACAAGGACCTGATTCGGGAAAACCTTCTCAAACTGCAGGATTGAGAGTAAGAACTGAAGAACTAAGGCGTACTTCATCATCACCACAGGCTTCCTCCCCTCGTGAGGCGTTTGAACCTTTACGCTCAGGCCACTGCCCAGTTTTACGACCTGGACCAGCTCTTGGTTGTAATTTTTGTTGGAATACTATTGATAATCATGGGCGTATTTTACGCCGTAAAACAAAATACCACTGTCCAGAATGTCAGACCAATTTATGTATTGTTCCTTGTTTCCAAGAGTATCATGAACGACATTCTTCAACAGATAGCAAAGAATCACCAGGTTCTGTCCCTCAGTTAAAAGTTTTACCCAAGACAAGCTCCATA
- Protein Sequence
- MPQTFDGYSDCDSNWTVASRDAHLIKDLAEHLGSPYCKNYDTYTNPYQEILRGRADVFGFAMYVLHHPNIRFTYPHMQMDLCVLVHRQMPYRQTISRAFAVNTWALTGVALLLFVILFHVLGRRPAPLHVLRTSVTGMFYESHGRPLVNYTGLILSAWGMIIVTVFVGRFTSYLTVPHTATQMDTLEEINSKVTKVYGETGENIFNALDENDVVKQLLGKTKEPTDNDNIVREVAMSPNVAVVASEEHLRLEQLLQESKDEDGRALTHIAKQCILSPAYQGFMMRADFSVADTFSHLVQLMVQAGLVQKYDRYAPERGSFISESCKMDKLVMAKKMDFDRNQRGVSCVRRKLVDSFAKRVRDSFKEASKYFPIPDYNEIKRTTEVESSKNPKPLHLSAIAEPLTLLVHKAGIVAHGPPGNTVSSMQTKKLLANCLQTSRIKKFGTFSTTTRFASFLGEMSSGNRKPKLIVFDLDYTLWPFWVDTHVTPPFKIEKDGKIVDRLGDVIKCYPEVPEVLEKLKEEGYSLAIASRTGEIKGANQLINMFGWSKYFEYKEIYPGTKVQHFSRFQQQSGLSYSDMLFFDDEQRNINDLTAVGVTSILVGNGVTNKVINHVHPTILFTESLVDVTLAAEGKHLQAHRVVLSACSSYFQTAEMLKIKGLADTEQHISSSVHMTKSESASSDKAELLTPGDSTWGSDSARRSPSPMSPSLRRKRFRKSSTGSGSGSTERTSEEITSELSLGVTLVKPEPVSYTPEAESGGRSDSSLRNSTQEPSTDSEPRDGSQDSTEEDPLAMHMSHDSSAGIETQIADTGPGPSTSQQSLASQGLQWTLLEHGYPRFALSSCQATLSVQATSAFCTPDPPSNASQPRREGAQYSSSTYQAHQMLPMSSCAVVGTYGHPSSSSNSPYSSSYSNPCTSPCINPNVINMSGQNPPIRRKRSSNPQADENFVRALEAVRLGGIGFCKAARMFGVNNRTLWLEYKKRGYPVTRPSPSVKSRIKQEVASSSSATQPSTNRPVSSSANVPVSSSSAMCPPAVAMVGNFIDSRHADYSHSQAPSSPQNRFQEVAENLTPSPANLSGVWESFKNPNIFQDLSLRSPVSRSFAPFTFSLSNQSSSPRAKLLETAQGKKLIVCNKEVPVNMLRAIRAVLLQNCSINKAAIMYKVSQSTLWRYVGLLPMCLGERDLRDFITNVVPMKEPSPVPTTCVPSSKPGKRGRPLIRQPRIKKETDPVHMSPESEPGSPQFSSTSLLTLPNVRVERPYTDSPPTSLTSNLLTVPQPAYLVKQHSDPLIPTRHSSGTPPPTALVVQRQLSQPTPGQTCGIPPPFQVHLVSDSHHQPPSSKPAETTVRTISPSVVIEPLPVLRVISEQGPDSGKPSQTAGLRVRTEELRRTSSSPQASSPREAFEPLRSGHCPVLRPGPALGCNFCWNTIDNHGRILRRKTKYHCPECQTNLCIVPCFQEYHERHSSTDSKESPGSVPQLKVLPKTSSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872407;
- 90% Identity
- iTF_00872407;
- 80% Identity
- iTF_00872407;