Lko_01132-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- Mblk-1
- Assembly
- GCA_002313205.1
- Location
- NNCF01126069.1:2470249-2476963[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-18 4.9e-15 54.5 0.1 1 45 278 323 278 323 0.96 2 2 1.1e-18 1.5e-15 56.2 0.0 1 43 797 840 797 842 0.95
Sequence Information
- Coding Sequence
- ATGGCGGAGTGCTCGTATGCTCGTTGCGTTCAGGAGCGTCGAGCAATCAAAAAAGAGCTGCAAAGATGGACGAAGAATATGGTTTTCGTAGTAGGTTTGGAAAGAGTTGCTGAAGAGTTGATGGGAAGGAGAAAATGGAGACAATACCAagatgttgttttaaaaaatccccTCACTGCGGAGGTTGAACCTGACTGGGAGCCCCAAGATAAGTGCTGCTTCTGTGATGGCAGTTCATTTTTAGGGCCTGCTCCAAGTCCTGCGTCTGACAGTGGCAGCAGCACTAATAGTCGGAGTAGTTTCCACGAAACCCCCTCAGTGGCAGACGTTCATTCATCATCTACAGCAGCAATGACTACCCTTGAATCTGTTACTTCAATGGCAGCATCTCTAGCTGCAGTTGCTGCATTGAGTGTGAATTCAAATTCCTCTTCTGCAACGTCAGGAGCCAGTGCAACCCCTTCAGCTGCAGCCATGTCCATGTTTCCTCCCTCAACCCCACATAGTGGATTATTTCCACATTGGTACATTTCACCTCCACCTCCTCATCTGCCTCCTAATCTTCGAATAGACACTGTTGGACCTACATCCAAACAAGAATCACCTATACCTGCAATGGTTATGTCATTACCTGCATCAGCTACATCAGAGCAGCCTCTTGATTTGAGTGCGAAAGCAACATCATGTGTTACTCCGACAACTGATAATAATCCAGGACTGTGTGCTCGAAGTCCCACACCTGACCCATCTCTGAAAGTGCCAAGTGTCATAGATAAGCACATATTCAAGGCCAAGCCTCGAATGAGTTCTGTCGCCGGCCGCAGGCAGTACACTGAAGAAGAACTTCAAGCTGCATTGCGTGACATTCAGAGTGGAAAACTGGGTACCAGAAGAGCAGCAGTTATCTATGGAATTCCCCGTTCAACTCTTCGAAACAAAGTTTATAAACTCGCTATGGAACGTGAACGTGACTCACATCTGACCCCTATTACTCTGGTTGACAAGACTATATTAGTTCCACCTGTAGTTGCtttgaaggaagaagaagaagtcaaAGAAGAGGAATTTGATGAAAAGGAACTTTCCGGTGCCGAAGAGGAGAGAGAGGTTGAAAAAGCTCTCCGCAAACCTCTCTTATCCATGGAAGATCTCATTAGATTCTCTATGTTGGAAGGAGGTGGTCTTATGACAGCAGAATCTTTGCGAGCTTTGTTGCAGCATGGTAAGTTTTTGGAGGATAAGCAAAGAGGAGTTGCTccagaaagagaagaaggaacgCCTTCACCTTCTCTTCCTGCTTTTCCGAGCACTCCAGATTTCTGGCAAGGCTTGGAACATAGTGCACTGGGCCCATTTATATCTCAGATACTTGCAAACAGTGGAGGACAAAACAGAGATCTATCACCTGGCATTGGGAGTAAGAATCCAGAAGGACTTTCATCGAACCAGAGAGAGAACAGCCCCACAAACATAGTAAGTGATTACCTACCCAAATTTCCATCACCTCTTCTTCCAGAACTTTTACGTCGTATGATGGCTGATGAAGAGAGGAAATCAAGGCTTGCTGCACAGCAAGAGAATCAGGTGAATCAAGTGAATTTCTTAGTAAATGGTACTCATTTAGATGAAGCTTTCTCTAAAGCTGATGAAAAAGGAAAAGTGGGTAAATCTATGGGGCTATCATCTCCATCTGTGATAACCCGATCGGATGTTAGTAAAACTGATGCTGAGGAATCTTCAGATGTAGATGTGTCTGCAACAGGTGGACCTTCTGGGACGGCCACCCCACCCAATGTGATACTAAAAATTCCGTCCTTCAAACCAACATCAAAGAATGGAGTGGCCTCTTCTGGAACACCAGCAAGCATGCCTCCAGAAACAATACCATTCACCCACaatgtattttctctctcaaatttaACACCTGAGTCTAGTCAGCATTTGTCCATGTCTGTACCATTGGGTAGTGGGGGATCAAGGAGTAACCACAGTGATTCTTGCTCTCCACCTATCCCCAATTTGAGTGGAAAAGGCATAGGTGTCAGTCTTAGAGATGTCATTGCTAAAAGCATCagtcaaaaatttcagcaacaagGTACTGATGTGTCACATTTTCCTCTCCCTCAAAAGCTTCTGTTACCTGGTGAAGGTGCTGACCAGCCAGCTTACAAACGAGGCAGGTTTACACCACCTGTTGGTTGCAACCCATCATCAATTGCTGCTTCTGTAATCAAGCACAATAACAACAATACTCATTCAGATGATAAAAATGCTGCTCATAATATAGGCCCAACAACTACTAAATCAGCCACGAGTAGTTCCAACACCGGAACTCCTGGTTCAGGTGGGAAGGGTACTCGTCCTAAACGTGgcaaatatagaaattatgatAGAGACAGTTTAGTGGAAGCTGTACGAGCAGTTCAGAGGGGTGAAATGAGTGTACATCGAGCTGGATCTTACTATGGAGTTCCTCACTCTACCCTAGAATACAAGGTAAAGGAGAGGCATTTAATGAGGCCTAGGAAACGTGAACAGAAATCACAACTAGATGGTTCAAAACCCAAAGAAGAAGGTAATGTTGTGAAAACTACTACATCTGTCACAACAACTGTAGCAGCAACACCACTTCCAGTCTGCGCTGACAAAATACATACTCCACCCAAACCCCAAAAAGCATCTTTTACTCCCACCTCACCATTACCATCAGCTCCAAACGGGCTAAAAATTCCTCCTTTGTTTGATCCTAGCATATCTCCCTTAGCTTATGCTACTCCTCCACCCTTTCAATTTTGGCCTCCAACACCTTTCCATCCTTCTCTTCCTATACCAGACTATGTTCGTAGTAGCAGTACTGGTGGTAGTTTCACCCCTGGTTCAGAACAGTTCTTTGCTTCCCAAATGATACAGAGATTGCAAGAAGAATCCTCTCGGGTGCATGGAAATACCAGTCCTGGGGTGTCCTCAGCTGTCCGAAGCCCTCCAATAGCAAACGCAAGTACTGCACTTGGAAAAAGTGCCAGAGAAATGGCAGAGAGTCTTTATGATGGGACTGGAGCTAATGGAAGCTTTCTAGATGGTATTATTAGATCCAGTCTTGAAATGGGCCTTCCACCTGGAGCTTTAAAAGAAGGGGTTAGTAATGCCACCAATGAAAAGCTTACAGCACCTGAAAACCTGTCAAACAAAGCTCTTTTGGACCAGCTGTGTCGAAACAGTCGCCTTGCCCCGCTGCCCCGACCCAGTACTCAGAGCCACGCCAGTTCAGACGAAGAGACTACTAAGCAACCTTCAGAAAGTGGCAACTCGACATCCTCAGCGGATGCGAGTGCTGTCACTGCTGTTGTGGATCTTTCCTCTGTGTCCAGTAGCCATCCAGAGGTAGATCAGAAAAGAAAATCCACAGAAGAGGAGGAGAGTGAAATTTTGCCAAAACCAAACAACACCAAGGAGAAATTATCAGATGAAGATGAGGTAAAAATTTCACAAGAAGTTAATGGCGTAAGTAATGCTGCTGATGATTCAAAAGACGATGTAAGTGCCTGTGATAGTatgtctaatttaaaaaaagtgagtGATAATGATGCTGCCAAAGACTTGAAGCAAGAAGGGGAGTGTGAAGACCCAGAAACACAGGAAGATACCAAATTAAAAAAGATCAACTCATAA
- Protein Sequence
- MAECSYARCVQERRAIKKELQRWTKNMVFVVGLERVAEELMGRRKWRQYQDVVLKNPLTAEVEPDWEPQDKCCFCDGSSFLGPAPSPASDSGSSTNSRSSFHETPSVADVHSSSTAAMTTLESVTSMAASLAAVAALSVNSNSSSATSGASATPSAAAMSMFPPSTPHSGLFPHWYISPPPPHLPPNLRIDTVGPTSKQESPIPAMVMSLPASATSEQPLDLSAKATSCVTPTTDNNPGLCARSPTPDPSLKVPSVIDKHIFKAKPRMSSVAGRRQYTEEELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKLAMERERDSHLTPITLVDKTILVPPVVALKEEEEVKEEEFDEKELSGAEEEREVEKALRKPLLSMEDLIRFSMLEGGGLMTAESLRALLQHGKFLEDKQRGVAPEREEGTPSPSLPAFPSTPDFWQGLEHSALGPFISQILANSGGQNRDLSPGIGSKNPEGLSSNQRENSPTNIVSDYLPKFPSPLLPELLRRMMADEERKSRLAAQQENQVNQVNFLVNGTHLDEAFSKADEKGKVGKSMGLSSPSVITRSDVSKTDAEESSDVDVSATGGPSGTATPPNVILKIPSFKPTSKNGVASSGTPASMPPETIPFTHNVFSLSNLTPESSQHLSMSVPLGSGGSRSNHSDSCSPPIPNLSGKGIGVSLRDVIAKSISQKFQQQGTDVSHFPLPQKLLLPGEGADQPAYKRGRFTPPVGCNPSSIAASVIKHNNNNTHSDDKNAAHNIGPTTTKSATSSSNTGTPGSGGKGTRPKRGKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREQKSQLDGSKPKEEGNVVKTTTSVTTTVAATPLPVCADKIHTPPKPQKASFTPTSPLPSAPNGLKIPPLFDPSISPLAYATPPPFQFWPPTPFHPSLPIPDYVRSSSTGGSFTPGSEQFFASQMIQRLQEESSRVHGNTSPGVSSAVRSPPIANASTALGKSAREMAESLYDGTGANGSFLDGIIRSSLEMGLPPGALKEGVSNATNEKLTAPENLSNKALLDQLCRNSRLAPLPRPSTQSHASSDEETTKQPSESGNSTSSADASAVTAVVDLSSVSSSHPEVDQKRKSTEEEESEILPKPNNTKEKLSDEDEVKISQEVNGVSNAADDSKDDVSACDSMSNLKKVSDNDAAKDLKQEGECEDPETQEDTKLKKINS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -