Lko_20400-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01136808.1:51751-64967[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.4e-12 1.1e-08 34.2 0.0 1 39 276 315 276 319 0.90 2 4 1.5e-13 2e-10 39.8 0.1 1 39 330 368 330 371 0.95 3 4 4.1e-17 5.4e-14 51.2 0.0 1 45 385 430 385 430 0.97 4 4 2.7e-19 3.6e-16 58.2 0.1 1 43 437 480 437 481 0.96
Sequence Information
- Coding Sequence
- ATGCAGGTGCCTCACAGCAGTGCCCCAACACCTGTCATGACTCCACATTCACTGGCACCCACACCTCAGATGGTGATGGAAGGACACCCCGGATCACACCCTGCCTCGCACTCATCAGCCGGGAGTGGGGGTACTGATGTTGACTTGCCTCCTGAGGCACAACCTCCTGCACCACAAGCCACTTTGGTGCATGACAATATGGAAATGGAATGCTCAGACCGCAGTCGAGAGATACAAGTTTGTTCAACATTTGCTCATTTCTTCAAATCAGAAATATTGTCTACAGATGGATCTGGATCAGTACAcagagaagaaaatgtaaaagtaaaatttgaaacctTGCGAGCCATGGAACAAGGAGACACTATAGACATCGATAGTCACATGTCTGAAAGAAATGTTGAAGATGAACATACAATGCACACAATGATGATAACGCCAGAGCTCTTAGGACTGATTCCATCTTCATCTGGTCACTCAGATCTGAGTGGGGATGCTGTCAAAGGGAGCCCCAAGAGCTGGACTCAGGAGCACATGGAGATGTCGGGTACTTACGGCCTATCAGGTGCATGCCCCATTTCCTTGCTGCCATCAGGCCACTGTGCCAACTATTTGCAAAGAGTGGCAGAGGGAGCATTGACTACTTTCTTCCCTGAAACAAGGGTTTATGATAGTCCaaaattgaacacTACCTATGGTCTTCTAGACAATATGTGGTATTATAGAGTTAGATATTGCCTAGTGTTCCCTAAATCCTTTGGTCCGGTTACAGAAGTTAACAATGAATCGACACCCAAGACTGGTGGTGGAGGTCCTAAAACATGGACACAAGAGGATATGGAGATGGCTCTAGATGCCCTACGGAACCACAACATGAGTCTAACCAAGGCTTCAGCCACATACGGCATCCCATCCACAACTCTGTGGCAGCGGGCTCACCGCCTCGGAATTGACACCCCAAAAAAGGAAGGCCCCACCAAGAGCTGGACAGAAGATAACCTTAACAGCGCACTGGAGGCACTACGCACAGGAACCATTTCAGCAAATAAGGCTAGCAAAGCGTATGGCATACCGAGCAGTACATTGTATAAGATCGCACGGCGTGAAGGCATCCGCCTGGCAGCTCCATTCAACGCTGCACCTACCACTTGGTCCCCTGACGATCTGGAACGGGCCCTTGAGTCCATCCGCTCAGGCGCATCGTCAGTACAGCGTGCATCTACTGAGTTTGGCATTCCTACGGGCACGCTCTATGGTCGCTGCAAACGCGAAGGCATCGAACTCTCACGCTCCAACCCCACGCCCTGGTCGGAGGATGCCATGGGCGAAGCCTTGGAGGCAGTGCGCCTGGGCCAGATGAGCATCAACCAGGCAGCCATCCACTACAACCTGCCCTACTCCTCGCTGTACGGCCGCTTCAAGCGGGGCAAGTATGAAGCAGAGGGCCACCACCCGGATGAGCCTCCTGCTGGCCCATCTCCTCCTCCGCCGCAGATCATGGTGGTACCCTACCAGCAGCCTCCTCCCCCGCCCCATGCCCAGCATCCACCTCCCCCACCCGGTCCACCTCCACCCGGCCCGCCTCCACCAACGCAActtccgccgccaccaccgcagCAGCACCATTCGCCCCAACACCAGCACCCCATGTACCAGCACAGCAGCTGA
- Protein Sequence
- MQVPHSSAPTPVMTPHSLAPTPQMVMEGHPGSHPASHSSAGSGGTDVDLPPEAQPPAPQATLVHDNMEMECSDRSREIQVCSTFAHFFKSEILSTDGSGSVHREENVKVKFETLRAMEQGDTIDIDSHMSERNVEDEHTMHTMMITPELLGLIPSSSGHSDLSGDAVKGSPKSWTQEHMEMSGTYGLSGACPISLLPSGHCANYLQRVAEGALTTFFPETRVYDSPKLNTTYGLLDNMWYYRVRYCLVFPKSFGPVTEVNNESTPKTGGGGPKTWTQEDMEMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEDNLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPDDLERALESIRSGASSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGQMSINQAAIHYNLPYSSLYGRFKRGKYEAEGHHPDEPPAGPSPPPPQIMVVPYQQPPPPPHAQHPPPPPGPPPPGPPPPTQLPPPPPQQHHSPQHQHPMYQHSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -