Lstr036319.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lathronympha strigana
Gene Symbol
nfxl1
Assembly
GCA_949128165.1
Location
OX421923.1:9989960-9992431[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2 4.5e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 20 0.014 3.3e+02 2.7 0.7 4 10 169 175 168 175 0.97
3 20 3.1e-07 0.007 17.7 15.9 3 19 186 202 185 202 0.95
4 20 1.2e-05 0.27 12.6 9.0 3 19 239 255 237 255 0.91
5 20 0.26 5.9e+03 -1.3 1.4 5 10 279 284 279 284 0.94
6 20 5.7e-09 0.00013 23.2 13.9 1 19 290 308 290 308 0.98
7 20 8.3e-08 0.0019 19.5 17.1 3 19 345 361 337 361 0.86
8 20 1.9 4.3e+04 -4.0 0.7 1 4 370 373 370 373 0.94
9 20 2 4.5e+04 -5.3 2.2 5 10 384 389 384 389 0.88
10 20 5.9e-06 0.13 13.6 18.3 1 18 395 412 395 413 0.97
11 20 9.1e-09 0.0002 22.6 15.9 1 19 422 440 422 440 0.99
12 20 7.7e-05 1.8 10.0 5.1 9 19 488 498 486 498 0.89
13 20 0.024 5.4e+02 2.0 1.0 6 12 497 503 497 504 0.92
14 20 0.015 3.4e+02 2.7 5.5 3 11 509 517 508 518 0.88
15 20 0.37 8.4e+03 -1.8 3.3 14 18 547 551 547 552 0.85
16 20 0.0032 72 4.8 6.6 1 11 588 598 582 599 0.91
17 20 0.84 1.9e+04 -2.9 1.5 15 18 613 616 612 617 0.82
18 20 9.8e-06 0.22 12.9 13.3 1 18 628 645 628 646 0.87
19 20 2 4.5e+04 -6.5 3.4 9 13 652 656 652 656 0.71
20 20 5.9e-07 0.013 16.8 10.9 1 16 687 701 687 706 0.87

Sequence Information

Coding Sequence
ATGGCCCGGCGATACCACGACGCGGCTGCGAAATTGCAGCAAAATGTGCAGAAACATTTGAAGGGAATGAAGGAGCTTTCTTCGTCAGAAGATGAGGAGCCATACGAGTCCAGCGTTCTTGAGGGCGTGTTGCAGAGATACAGGAATGGCGGTGGCGATGCGCACATGCTTAATCGCACGAAGAACATGCTAGAGGAAGCCATCAGCGGCCGCCCTGTTACATGCCTGATTTGCATTGGTTCTATCAAACGCGCCCATCCCATCTGGACCTGCGACCACTGTCATTCGTATTTCCATCTCTCTTGTATCCAAAAGTGGTCCAACGACAGCATTAGCCTCCGGAGCGAAGAGAACCACGGTCCGATCGCGGTATTTGTGTCCAAGAAAATCGAGTGGTGCTGCCCTAAATGCCGGCAGTCGTATAGCAAAGAGGAAATTCCTCGTAAATATCGCTGTTTTTGTAGTAAAACTGATGACCCTCCATTTCATCCATGGTTGATACCACATACATGTGGAGAAGTGTGTGAAAAAAGGTTGTCAACAGGAGATAATTGCAAGCATAAATGTCTCTTGTTATGTCACCCTGGCCCGTGCCCACCATGCCCACAGACTGTAAATGGAGTATGTTTCTGTGAGAAGGAACGAAAGAGAGTTCGCTGCAGTGCTGCGAAATGGTCTTGTGGTCAACAGTGTAAAAAATTACTCTCTTGCAAATCCCACAAATGTGAAGATATCTGCCATGTAGATGCCTGTGCTCCTTGTACCTACACAAGTGTCCAGGCATGCCTGTGTGGTGGTGAAAAGGTCAAGCGACCCTGTAATGACCCTCTATGGCGCTGTCAGAAGCTTTGCAACAAACCATTCTCATGTGGCTACCATAAATGTGAAGAAATTTGTCATTCCGGTGACTGTGGAGGCTGTCCCAACTCAGGCATGCGGTCATGCCCCTGTGGAGCTAATCAGCGGTTTGTTCAATGCCCTGATGTTATGGAGACATGTGTTGGCACCTGTGGGAAGACCAAGGATTATTGTGAACATACTTGTCCAGAAAAATGCCACAAAGGCCCCTGCCCACCATGCCAAGTGTTAatagaaaaaaagtgtcaatgTGGAACACATGTGAGATCATTACCTTGCAGTAAGGAGTATAAATGTGAAACAAAGTGCCGAGGAACAAGGCCTTGTGGGAAACATGGATGTGCTCGAAAATGTTGCAATGGAAACTGTCCTCCATGTGAGAAAATCTGCGACAAGCCACTCCAGTGTGGGCGCCATAAGTGTACAATGGTCTGCCACCACGGTCCTTGCTATCCTTGTCCCCTGGAATCCAAAGTAACTTGCCGATGTAAAGGGACCTATGTAACAGTTCCTTGTGGTAGGGAGAAGCATACTAAACCTCCTAAATGCAATATCCTGTGCAAGCTTAAATATAAATGTGGACATGTAGAAGAGAACAAGCATTCCTGCCATTTTGGTGATTGCCCCCCTTGTAAAGCAATATGTCATAAGCAGTATGAGAACTGTGAGCATGACTGTAAAGCTGTTTGCCATGCATATGTAACAGTTGTTTTTAAACAGGTTGAGAAACCAGCTACTCCATGGGAAGTGCAGCGACCAAAGACCAAAGTAATGACATTAGAATGCCCACCGTGTGAGATTCCTGTCCCTATTGTTTGTTTTGGGGAGCATGAGACAGCTGACCAGCAGTGTCATTCTGCATCACGCCGCCCCTGTGGTCGCGAATGTGGCAAAGAACTTCCTTGCACTAAACACAAGTGCAAACTGCTATGCCACTTACACACAGCTGATCCTAACTACCCTAACATTCCATCTTCCTGCGAACCCTGTAACAGGGAATGTCTAGTCCTGAGACCAGATAAATGCAGCCATAAATGTGCCAGAAGCGTCTGCCATCCAGGAGCCTGCCCACCCTGTGAAATCATAGAAAGACTTCCTTGCCACTGTGGAGTGACCGAATTATATTTACGATGCCGTGAACTGAGTTTGGCTACAGAAGAAATGCTGTCATGTAAGCAGCAGTGCCCTAAAACTCTGGAGTGTGGTCATAGATGCAAGAACTTGTGTCATCCAGGAGCCTGTGCAAGCCAAGTCTgcacaaaaaaaacaaaggtgTACTGCCCATGTGGCAACCTGAAGAAAGATGCTTCTTGTAACCTTGTAAGGAGTGGAGCCGCGAAACCTTCCTGTGACTCTACCTGTGAGGACAAACGCATTGCAGCTCAgttagaaaaagaaaaagaagagaaGAGACGCAAAGAGATTGAGGAAGAGAAAAATCGCAAGGAGTTAGCAGAATATGAATGGAAGTTAAGtggaaagaagaagaagtataaAGAAAAGAAGGTTGTTGCAAATGAGGATGACCGGAGCCTGCTGCAAAGGTATTGGATTCCTCTCGTTTCGGTTGTGGTTGTTGTAATTGCTGCTatctatttcatattttatgtcTAA
Protein Sequence
MARRYHDAAAKLQQNVQKHLKGMKELSSSEDEEPYESSVLEGVLQRYRNGGGDAHMLNRTKNMLEEAISGRPVTCLICIGSIKRAHPIWTCDHCHSYFHLSCIQKWSNDSISLRSEENHGPIAVFVSKKIEWCCPKCRQSYSKEEIPRKYRCFCSKTDDPPFHPWLIPHTCGEVCEKRLSTGDNCKHKCLLLCHPGPCPPCPQTVNGVCFCEKERKRVRCSAAKWSCGQQCKKLLSCKSHKCEDICHVDACAPCTYTSVQACLCGGEKVKRPCNDPLWRCQKLCNKPFSCGYHKCEEICHSGDCGGCPNSGMRSCPCGANQRFVQCPDVMETCVGTCGKTKDYCEHTCPEKCHKGPCPPCQVLIEKKCQCGTHVRSLPCSKEYKCETKCRGTRPCGKHGCARKCCNGNCPPCEKICDKPLQCGRHKCTMVCHHGPCYPCPLESKVTCRCKGTYVTVPCGREKHTKPPKCNILCKLKYKCGHVEENKHSCHFGDCPPCKAICHKQYENCEHDCKAVCHAYVTVVFKQVEKPATPWEVQRPKTKVMTLECPPCEIPVPIVCFGEHETADQQCHSASRRPCGRECGKELPCTKHKCKLLCHLHTADPNYPNIPSSCEPCNRECLVLRPDKCSHKCARSVCHPGACPPCEIIERLPCHCGVTELYLRCRELSLATEEMLSCKQQCPKTLECGHRCKNLCHPGACASQVCTKKTKVYCPCGNLKKDASCNLVRSGAAKPSCDSTCEDKRIAAQLEKEKEEKRRKEIEEEKNRKELAEYEWKLSGKKKKYKEKKVVANEDDRSLLQRYWIPLVSVVVVVIAAIYFIFYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00023391;
90% Identity
iTF_00411076;
80% Identity
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