Lstr040160.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421927.1:7667398-7686882[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00042 0.037 15.8 0.1 1 23 309 331 309 331 0.99 2 11 0.0015 0.13 14.0 0.5 1 23 338 360 338 360 0.98 3 11 0.12 10 8.1 2.3 2 23 365 386 364 386 0.92 4 11 0.00032 0.028 16.1 1.3 1 23 391 414 391 414 0.96 5 11 0.04 3.5 9.5 0.1 2 23 420 442 419 442 0.94 6 11 0.45 40 6.2 0.0 2 21 447 466 446 471 0.91 7 11 0.087 7.7 8.5 0.9 3 23 477 498 476 498 0.95 8 11 0.0036 0.31 12.8 1.8 1 23 503 526 503 526 0.96 9 11 8.1 7.2e+02 2.3 0.1 1 13 554 566 554 570 0.82 10 11 0.023 2 10.3 1.2 1 23 631 653 631 653 0.91 11 11 0.0011 0.098 14.4 0.0 2 23 657 679 656 679 0.96
Sequence Information
- Coding Sequence
- ATGTCGGTGAAGAGGAGCAAGTTGTGCTGCGCCTGCCTGGCGAACGACCGCAGATTATTTGACATGAAAAAGCATAAACTTGCCGACGCTTTTTTCTGTTTCTCAGGGACACCTGTAAATGACCCTTTGTTATTGGACAAGCTTCCTCAATATCTGTGTAGTTACTGCTGCACCTTGCTGCGTAAATGTGCGTCTTTTAAAGACATGTGTAACCAGACTCAACAACAACTAATGGCTGACCTGCTCAAGAGACAGtTAAATACATATGCTTGCAGAATAAACAATCCCTCACACCAATTCCTCAATTTAACTGTAACAGAAGTTACAGTCATAGATTTCACTCCATTAACTGAAGACATAAATGTTCTACACACGACAACACACATTAAAGATGAACCAAATATAGATATAGTTGATATAAACagtattttaaagaaaactgataaagaaatagaaataatgGATAAAATAGATGAAGTTAATGATGATCAACCAGTTGTTAAAGTATACAAATCTACTAGTTTGAATACTGAatcaaacattgaaaatacaTTTGATGACAGTAGTATAGATTTCAGTACAGAAACTGACTTAAACATGGCAATAGACGTCATAGATGACAAAGAAAGTACTGTTAAGAGTGTAAAAGCTGAATTCAATACAGAAAGAACCAAAACTAAAATGGGTGACATGAGCAGTATAGTTAAAGCTAAGCAATCACTAAAGCAAAAGAGAAGAAAGATTGATGTAGTTAAGAAAAAGACACAGAGAGAATTAGAGAGTGTGAGAAAGGGAACAGAGGAAACAATAAAGAATGAAAAGTTTGAGAGTACTCATGCAGTGAAAATTGTTATATTAAGCAAGGAAGAGCAACTGTCAGAGGTCGCCGCGCGAAAAGAGACCAGGAATTATTTAGAGTCCCACTACAAGTGTGAGGAATGTTGGAAAGGGTTCGACGCCAAGGCAGCGTATGAGAATCACATACTGCGGCATAACCCGAACACGGGCGCGTACATGTGCGAAGTATGTCGCGTGCGGTTCCGCGTAAAGGTGCGTTTAAACAACCACATGGAGTCGCATCGGCTGAAGATCCATTGCAACGAATGCGGCTTCGTTTCTAGAACCAAGTCTCAAGCTAAGGACCACCACGGGTTGCACGCGGGCAGGACGTTCGATTGCCCGCACTGCGGGAACAGTTTCCAaaagagaTCGTCGTACCTGTCTCACGTGCGGATCGCGCACCCCTCGTTGAACGTATCGTGTGACGTTTGTGGCGAAATGTTCGTCGGTGACCAGGGACTTAAACAGCACAAGTCTAAAACGCATGCGCAGAATATCAAGTGCGGAATATGCTTAGCCGCATTCGTCAGTGTCTCTGCGCTGGACAGACATACCGACACGGCGGGCGAGCATAGGGACCTACGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGCAAGCGTTACACGAACACTTGGAGAAGCAGCATCCTAAGGAGACACATCGTTGTGAGGAATGCAATACGGAGTTCCCATCAGCGGCTGCCTATAATATTCATCACCAACGCAAGCATCTCAACCAGAAGTTCAAGTACAACGAAGCGGGAAGAGTAGCCAAACGAAGGGCCCCCGCGTCGCGGGGCCCGCGGGCGCAGTTCGTGTGCGAGCAGTGCGGACATATACTGCCGCAGCGCTCGCGGCGCCAGCGCCGGCGCGTGCGCCTCTCCCGCGGGCCGCCCACAGCCTTTAAACTAACGGCTGAGACAGCGGAGAAGCCCCGCCAACTCATGCTAGTCCACCAGAACTTACAGGGCTTCTCCAGCAAGGAATTAGAGAGTGATATACTTCTGCGGTACCATCAGCGTAAACACCTAGCCGTGAAACCATACGCCTGCAATCACTGTCCGAAGACCTTTGATTTCAAACAAGTTAGAGatGCACATTTAAATATCCACGAACGCGTGCCGTGCCCAATCTGTGCGCGCGAATTCGCGGCCAAGTCATACCTGCGCCTGCACATCAGCACGGTACACAACGGCCAGCCCTGGCCGAAGCGGGACCGCAAGCGAGCCAAGAAGCCTTag
- Protein Sequence
- MSVKRSKLCCACLANDRRLFDMKKHKLADAFFCFSGTPVNDPLLLDKLPQYLCSYCCTLLRKCASFKDMCNQTQQQLMADLLKRQLNTYACRINNPSHQFLNLTVTEVTVIDFTPLTEDINVLHTTTHIKDEPNIDIVDINSILKKTDKEIEIMDKIDEVNDDQPVVKVYKSTSLNTESNIENTFDDSSIDFSTETDLNMAIDVIDDKESTVKSVKAEFNTERTKTKMGDMSSIVKAKQSLKQKRRKIDVVKKKTQRELESVRKGTEETIKNEKFESTHAVKIVILSKEEQLSEVAARKETRNYLESHYKCEECWKGFDAKAAYENHILRHNPNTGAYMCEVCRVRFRVKVRLNNHMESHRLKIHCNECGFVSRTKSQAKDHHGLHAGRTFDCPHCGNSFQKRSSYLSHVRIAHPSLNVSCDVCGEMFVGDQGLKQHKSKTHAQNIKCGICLAAFVSVSALDRHTDTAGEHRDLRPCEQCGENCASEQALHEHLEKQHPKETHRCEECNTEFPSAAAYNIHHQRKHLNQKFKYNEAGRVAKRRAPASRGPRAQFVCEQCGHILPQRSRRQRRRVRLSRGPPTAFKLTAETAEKPRQLMLVHQNLQGFSSKELESDILLRYHQRKHLAVKPYACNHCPKTFDFKQVRDAHLNIHERVPCPICAREFAAKSYLRLHISTVHNGQPWPKRDRKRAKKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -