Lstr019894.2
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421910.1:23147624-23153347[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.7 8.6e+02 2.0 0.1 3 13 200 210 198 214 0.73 2 12 1.3 1.2e+02 4.7 0.2 3 23 228 251 226 251 0.92 3 12 0.19 17 7.4 1.8 1 19 256 274 256 276 0.89 4 12 9.2 8.1e+02 2.1 0.2 3 18 317 329 315 334 0.65 5 12 5 4.4e+02 2.9 0.7 3 23 345 368 343 368 0.91 6 12 0.13 12 7.9 0.7 1 18 373 387 373 393 0.77 7 12 0.0069 0.6 11.9 0.1 6 23 404 421 403 421 0.99 8 12 6.1e-05 0.0053 18.4 2.0 1 23 427 450 427 450 0.97 9 12 0.00011 0.0094 17.6 2.8 1 23 456 478 456 478 0.99 10 12 2.4e-05 0.0021 19.7 2.1 1 23 484 506 484 506 0.98 11 12 1.6e-06 0.00014 23.4 0.2 1 23 512 534 512 534 0.97 12 12 0.0015 0.13 14.0 0.7 1 23 540 563 540 563 0.97
Sequence Information
- Coding Sequence
- ATGAATTTGTGCAGAATCTGTCTTAAAACTCCAGCCAATAAGGCTATTGTTGAATTAGAAACAGCCATAAATGAGAACAACAAAAACTACTTTGAAATCATGgtgttttgtttaaatataaagGTAACAGAGGACTCAAAAATTACCACAAAACTATGTAGTATTTGCTACAGAAAAATAATTTCGTTTTACAAATTTAAGGCTTTAGCTTTAAAAAATGATGCCTATTTGAAATCTTTCAACCCAGATATATCGCTAGACGATCAAAAACTATCAGTATATGTTGATGAAAATGGAATCAAACATGAGAATCCCTTGGAAACTGATGATTATGGTTCTAGCATCATTGAGGAGGGCAGAATCAAAGTGAAAATAGAGGTAGATgtgaaaaatgaaaacatatcaGGCGATGAAGATGTTGACAACAAAAATTCATATGTAGAAATTCAAATAAATGATATGGATGAGGACACATTAGAAGATATAGAGCAAATAAGTGttatgtcacaaaatgaaaaGACTAATAAGATCAAAGTAAAAGCAACACATAAAAAACTTAGTCATCAAGCAAAGGAAGTTACACTAGAATATCAAATGTGTGTACAGTGTGGCAAGCATGTCCGAAATCTCAAGGAGCACTTGGTCTGCCACCTACCTAAGGGTGAACGGAAGAAACTGCCCTGCAAGGTTCCAGGTTGCCCCAAGCTCTTCTTCTCATTGAGGGGCCAGAAATACCACTACAAAACTGCACATAAaggaattaaatataaatgtgaTATTTGTAATAAAGAGGTGTCAAATGTATCACAACACAAGCGTCACTCCCACAACCGGTCCACACTACCACTAGGAGATATTCAAAAAGACGCTAAGGATGAAGACACACCATCTCAATCTGGTAGTGGTAGTGGTTGCCAACCAAAAGAACCCAAACTTGGATATCAAATGTGTGATGAGTGCGGCATGCCTGTCCGTAACCTTAAGGAGCACTCACTCCGTCACCAGCCTAAGGAGAAGCGGAGAATGCTGCCGTGCAAGGTCCCAGAGTGCCCCAAACTTTTCTTATCAAAACATGGTCAGAAATACCACTACAAAACTGCACATCTAGGCTTTAAGTTCAAATGTGATATTTGCGATAAAGAGGTATCCAACCTATCGCAACATAAACAGCAGACCCACAACCGGGATGCGCTCGCGCACGCGTGCGCGTGCGGCCGCCGCTTCATATCGGTGTCCGCGCTCAGCGTGCACATGACTACGCATACGCAAGAGAACCCGTTCGAGTGTGACGTCTGTCACAAGAAGTACCGCTCCAAGGCTTTCCTCTCGAACCATATACGCGAGATTCACGAACAGGAGAAAAGATTCCAATGTGAATTTTGTTCCAAGGGTTTCTTTAGGAAACAAGCGTTTCAAGATCATATAAGGAAACATACAAAGGAGCGTCCGTACAAATGCGAGGAGTGTGGTAAATCGTTTACTTGGAGCCACACGCTGACCAACCACCGCCTCATCCATCAGGACGAGAAGAAGTTCCCGTGCGAACGGTGTGACAAGAGCTTCAGAAATGCGGGCGCTCTGAAGACGCACATGGTCTCGCACACGAAGGAGAAGCGTTACCCGTGCGGGTTCTGCGGCGTGCGCTTCGGCCGCTCCGACCACCGCAACCGACACGAGTTAACCGCACACAAGAAACGAGCACAGGCCACCGACCTTGTCTCTACGTAG
- Protein Sequence
- MNLCRICLKTPANKAIVELETAINENNKNYFEIMVFCLNIKVTEDSKITTKLCSICYRKIISFYKFKALALKNDAYLKSFNPDISLDDQKLSVYVDENGIKHENPLETDDYGSSIIEEGRIKVKIEVDVKNENISGDEDVDNKNSYVEIQINDMDEDTLEDIEQISVMSQNEKTNKIKVKATHKKLSHQAKEVTLEYQMCVQCGKHVRNLKEHLVCHLPKGERKKLPCKVPGCPKLFFSLRGQKYHYKTAHKGIKYKCDICNKEVSNVSQHKRHSHNRSTLPLGDIQKDAKDEDTPSQSGSGSGCQPKEPKLGYQMCDECGMPVRNLKEHSLRHQPKEKRRMLPCKVPECPKLFLSKHGQKYHYKTAHLGFKFKCDICDKEVSNLSQHKQQTHNRDALAHACACGRRFISVSALSVHMTTHTQENPFECDVCHKKYRSKAFLSNHIREIHEQEKRFQCEFCSKGFFRKQAFQDHIRKHTKERPYKCEECGKSFTWSHTLTNHRLIHQDEKKFPCERCDKSFRNAGALKTHMVSHTKEKRYPCGFCGVRFGRSDHRNRHELTAHKKRAQATDLVST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -