Lstr040363.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421927.1:9012530-9025945[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.1 5.4e+02 2.7 0.8 1 23 307 329 307 329 0.79 2 12 0.35 31 6.6 2.8 1 23 336 358 336 358 0.96 3 12 6.5 5.7e+02 2.6 1.8 2 23 363 384 362 384 0.92 4 12 0.0012 0.11 14.3 2.2 1 23 389 412 389 412 0.97 5 12 0.0052 0.46 12.3 0.0 2 23 418 440 417 440 0.88 6 12 0.077 6.8 8.6 0.0 2 20 452 470 451 472 0.93 7 12 3.8 3.3e+02 3.3 0.0 3 23 482 503 481 503 0.90 8 12 0.086 7.6 8.5 0.6 2 23 505 527 505 527 0.97 9 12 0.0016 0.14 13.9 4.4 3 23 569 589 568 589 0.97 10 12 9.5e-05 0.0083 17.8 2.6 1 23 596 618 596 618 0.97 11 12 3e-05 0.0026 19.4 0.4 1 23 624 647 624 647 0.98 12 12 5.2e-06 0.00046 21.8 0.2 1 23 654 677 654 677 0.96
Sequence Information
- Coding Sequence
- ATGGAATGGATTACTAAAGCAGATGAAAATCAGCCAGCAAAAGCGGCTAGTGTGTTATTTTGTCGAGCATGTCTCGCGACAGAGGAACAATTGTTCAACCTGCATGAATATAAACTTGTTGGCGAGTTCTTCCGCGTTTCAGGAATTATTGTAACAGTGAAAGACGAGTTACGGCAGCATCTATGTATGTGGTGCGCTGCTTTCATGAAGCGGTGTGCTGCATTCCGAGCAAAATGTCTCAGAGCCGAACAGTGCCTCCAACTGTTAAAAGGCGAACTAACTACAGAGTCCATTCGAACTATTGACCGTCTCACTAACCGACTCGCTGATCTTAACCAAACTGAGACAGAATGCATCAGTATTGACAGTGTAGTCGTACCTGTTAATATAGGTCCAATGAACGTAAACAATAATATAGATGTTACTAATATTGTTTGTGAAACAGTTAAGAAAGAGATTGAAACAGATAGTTTAAATATAGATAATGAAGTTAATGTTATGGAATCAAATTGTGTGACTGCAAAAATTGAGCCTGAATATCTTAATTATGTCGTAATAATTAAACCAGAATGTGAAGATACAAATGGTGGAGTAAAAGACAATGGAAAACCAGTTACTAAatcaaaaaataatgtaaaaccaattagtaaaacaagaaaaagaGAAGCACCAAAGAGTACTgaagtgaaaataaaaaaaccgcgAAAAAAGATAGACAATCCGGTTGATAATAAGAAAGGGGAAAAGAGAAAGAAAACGTGTAAGAAAAGGACGGCGGATAACGATTTTATGCCTAATAATGTTAATTTGGAAGAGTTCAAGAAAACTTGTAatgttgatgtttttattttaactcgTGAGGAACAACTAGCCGAGATAGAGGCTCGCCGAGCCACCGACGAGTACAAGACAGCGGTGTTCACATGCGCGCCGTGTGGCAAGTACTTCCGGGCAGACGGGGCGTACGACCATCATAAGGCCAAACACGAGAAGGAAGCGGGAGCACACGAATGCCCGGTTTGCAGGCTTCGCTTCCAACGCAGAACCTCTCAACTGAGTCATTACGACAGACATCGGTTTAAGATGGTCTGCAAACTGTGCGGTTTCGTGTCCCGGGCCAGGCACCAAGCTAAGTTGCATCACGAATGGCACTCCGGCAAGCGGTACCAGTGCAAGTATTGCGGCAATGAATACAACAAGCAATCCACATACCTGACGCATGTGCGGCAGACGCACGCGTTGCAAGGCGTGGTATGCGACATGTGTGGGGAGACGTTCATCAACGCGCCGGGGTTGAGGATGCACAAAGTGTACATGCACGGTGTGGCTGTCCAAGAAAAATCTAAGACAATGGAGTGTGCGACCTGCTCCGTGACATTCGTGAGCCTGGCCGCGTTGAACAAGCACAAGATGGCGGCCGGCGAGCACGACAAGATGGCCGCGTGCGCGCAGTGCGGGGACACCTACGACACGGAGGACGGGTTGAAAGGACACGTGGAGGCCGAGCATCCCCGCTGCCAGGGGTGCGACTCAACGTTCCTGAACTCAGATTCCTACGAACTCCACATCATGCGCAAGCATCTCGGCAAACGGGAAGATAGGAAACAGAAGCGACGGGCGGCGAATGAGCGCGCGCGGGCGCTCGGTCTGCCGAAGCCCTACGCGAGCCCCAAGGGTGCCAACAAGCGGAGGCCCAGAGCGTGCTGCGACCACTGCGGGAAGATGCTCCCGAACACATCGATGCTTCGCTACCACATGCAGAAGCACATGGGCCAGAAACTGGCTTATTGCTGCGCGCACTGTCCTAGGAGCTTCTATATTAAGGCACAATTGGAGCTTCATATGAGGGTCCACACGGGTGAGAAGCCATACAAGTGTGAGCAGTGTAACTACGCGTCTGCGTCGAAAAGCAACCTCAGCCGGCATGTGCTCACTGCGCATCTCGGTATCCGAGGCTCGTTCCCCTGCTCGATGTGCGGGCGCTCGTTCACCACCAAAGCCTCGATGCAGGTCCACGTGCGCGCCGTGCACGGAGGCGCGGGCTGGCCCAAGCGGGACCGCAGCAAACGGAAGCGCGCCAAAGATTTAGATAATAAATGA
- Protein Sequence
- MEWITKADENQPAKAASVLFCRACLATEEQLFNLHEYKLVGEFFRVSGIIVTVKDELRQHLCMWCAAFMKRCAAFRAKCLRAEQCLQLLKGELTTESIRTIDRLTNRLADLNQTETECISIDSVVVPVNIGPMNVNNNIDVTNIVCETVKKEIETDSLNIDNEVNVMESNCVTAKIEPEYLNYVVIIKPECEDTNGGVKDNGKPVTKSKNNVKPISKTRKREAPKSTEVKIKKPRKKIDNPVDNKKGEKRKKTCKKRTADNDFMPNNVNLEEFKKTCNVDVFILTREEQLAEIEARRATDEYKTAVFTCAPCGKYFRADGAYDHHKAKHEKEAGAHECPVCRLRFQRRTSQLSHYDRHRFKMVCKLCGFVSRARHQAKLHHEWHSGKRYQCKYCGNEYNKQSTYLTHVRQTHALQGVVCDMCGETFINAPGLRMHKVYMHGVAVQEKSKTMECATCSVTFVSLAALNKHKMAAGEHDKMAACAQCGDTYDTEDGLKGHVEAEHPRCQGCDSTFLNSDSYELHIMRKHLGKREDRKQKRRAANERARALGLPKPYASPKGANKRRPRACCDHCGKMLPNTSMLRYHMQKHMGQKLAYCCAHCPRSFYIKAQLELHMRVHTGEKPYKCEQCNYASASKSNLSRHVLTAHLGIRGSFPCSMCGRSFTTKASMQVHVRAVHGGAGWPKRDRSKRKRAKDLDNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -