Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421925.1:1215252-1221979[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 8.7 7.7e+02 2.2 1.7 1 13 163 175 163 177 0.87

2 10 0.06 5.3 9.0 2.5 3 23 220 241 207 242 0.94

3 10 0.035 3.1 9.7 0.3 3 23 264 285 262 285 0.95

4 10 0.00011 0.0097 17.6 0.9 2 23 308 329 307 329 0.97

5 10 0.00074 0.065 15.0 0.2 1 23 333 355 333 355 0.98

6 10 0.0036 0.32 12.8 0.2 1 23 360 383 360 383 0.94

7 10 2.3e-05 0.002 19.7 0.8 1 23 419 442 419 442 0.97

8 10 0.00039 0.035 15.9 1.5 1 23 448 470 448 470 0.94

9 10 1.8e-06 0.00015 23.2 1.5 1 23 476 498 476 498 0.99

10 10 2.8e-05 0.0025 19.5 3.6 1 23 504 527 504 527 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	8.7	7.7e+02	2.2	1.7	1	13	163	175	163	177	0.87
2	10	0.06	5.3	9.0	2.5	3	23	220	241	207	242	0.94
3	10	0.035	3.1	9.7	0.3	3	23	264	285	262	285	0.95
4	10	0.00011	0.0097	17.6	0.9	2	23	308	329	307	329	0.97
5	10	0.00074	0.065	15.0	0.2	1	23	333	355	333	355	0.98
6	10	0.0036	0.32	12.8	0.2	1	23	360	383	360	383	0.94
7	10	2.3e-05	0.002	19.7	0.8	1	23	419	442	419	442	0.97
8	10	0.00039	0.035	15.9	1.5	1	23	448	470	448	470	0.94
9	10	1.8e-06	0.00015	23.2	1.5	1	23	476	498	476	498	0.99
10	10	2.8e-05	0.0025	19.5	3.6	1	23	504	527	504	527	0.98

Sequence Information

Coding Sequence: ATGCCATTCTATACTGATCAGACCATTCCCCAGCCCACCGGACCTGACAAGCAAGCGCGCCTGGACGCATCAGCCATGTTAGAAGTGGAGATCAAGCCGGAGCCGGACGACCCCCCTGACCCCCCTGAGACCCCAGGGGGCCCCGGGTCACTCAGCGACCCTGGGGACCCTGGTGACGATGACCCGGACGACCGTGATCCCGACGACCTCTACCTTAAGGACCATATGGACGAACCTGAAGAGTCGGAACGCGTGAAATGCGAATCTCCAACGGATTCGGACGACGTGCCGCTGAAGCGACGCAAGAAACGCACGACTAACGGCCGACTCCCGCCGCCGCCCGTCGAACAACCGCCCGGTCTAGAAGACCAAGAACGCAGAATGAGCCCAGAAGACGAGGTCGAAGTAAAGAAGCACCGCGGCAATCTAAAGATTCTTCTAGAATGCTCCAACGCCACGCCCATTCGCTGCTTCAGCGGCTGTGGCTATAAGTGCTGTTACTGTACTGAGATATACATACACCCTACCCTGCCCATGTCCAAAGTCCAGCAGTTAATGCGAGAACGTGACCCATCCTACATGATAGACACCAATGTCGTCACCGTCGTCGAAAATTCTTACATCTGCCCCTTCAAATGTCGACACAACCATCTACTCTGCTACTACTGCGGATCCAACTACCCGGACCCCACCAGTCTCCGACAACACACCATCTCCGAACACCACCCGAAGAAGTTCAAAGTGATCGAGCATAAAAAAATGATCAAGATGGATTTAACCAGAATAGACTGTCGGTTATGTACAGAAAGTATCAATAATCTAGAAGATTTCAAGCGACATATAACTACTATACACAAGAAGAAATACTATTTTAATGCGAAGGATTTAATCTTACCGTTCCGGTTGACTTTGAATGAGCAGCAGTGTGCGTTGTGTGATGAAGTGTTTCCGTATTTCCATGCGTTGAATAAGCATATGAATAAGCATTTCAGTAACTATGTGTGTGAAACGTGCGGGTTGGGGTTTGTGGATAAGGGGAGGTTTGTTATGCACCAGCAGCGGCATGAGGAGGGGGATTTTCCTTGTGAGACTTGCGGGAAGATCTTTAAGGCGCAATATAACAGGGATCTCCATATAGACCGAGTTCACAATAAGCGAGGCCGCGTCTTCTGCCCCAAATGCGATGTAAAGCTCATGTCATACACGCAGAAACTGAAGCATTTAGTGGAGGTGCATGGTGACGCGCCTCTCTCTTTCCCCTGCAGTCTCTGCGACCGCGTGTTTGGCACCAGGAGAACACTCACTATACATAGACGGAAGGACCATCTAAAGGACTATAGATACGAGTGCCAATTCTGCGGCCAGAAGTTCTTTACCCGCTTCGCGCTCAACAATCACATGCCAACGCACACTCGAGAACGGAACTTCAAGTGCAAAGTCTGCGAGAAGACTTATCCTCGACTCAAGACGCTGAAAGACCACATGAGGATCCATACCAACGATAGGAGGTACAGGTGTCACGTGTGTGGACAGGCCTTTATACAGAACTGCAGTCTGAAGGGGCATATGAAGAGCCAGCATTCAGAGTTTGGGTAA
Protein Sequence: MPFYTDQTIPQPTGPDKQARLDASAMLEVEIKPEPDDPPDPPETPGGPGSLSDPGDPGDDDPDDRDPDDLYLKDHMDEPEESERVKCESPTDSDDVPLKRRKKRTTNGRLPPPPVEQPPGLEDQERRMSPEDEVEVKKHRGNLKILLECSNATPIRCFSGCGYKCCYCTEIYIHPTLPMSKVQQLMRERDPSYMIDTNVVTVVENSYICPFKCRHNHLLCYYCGSNYPDPTSLRQHTISEHHPKKFKVIEHKKMIKMDLTRIDCRLCTESINNLEDFKRHITTIHKKKYYFNAKDLILPFRLTLNEQQCALCDEVFPYFHALNKHMNKHFSNYVCETCGLGFVDKGRFVMHQQRHEEGDFPCETCGKIFKAQYNRDLHIDRVHNKRGRVFCPKCDVKLMSYTQKLKHLVEVHGDAPLSFPCSLCDRVFGTRRTLTIHRRKDHLKDYRYECQFCGQKFFTRFALNNHMPTHTRERNFKCKVCEKTYPRLKTLKDHMRIHTNDRRYRCHVCGQAFIQNCSLKGHMKSQHSEFG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00411777; iTF_00659702;
90% Identity: -
80% Identity: -