Lstr037454.2
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421925.1:1256202-1258757[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.8e-05 0.006 18.3 3.2 1 23 39 61 39 61 0.98 2 12 0.00016 0.014 17.1 1.3 1 20 67 86 67 89 0.94 3 12 0.059 5.2 9.0 0.6 2 23 128 150 127 150 0.92 4 12 0.23 20 7.2 0.1 2 23 175 197 174 197 0.93 5 12 0.9 79 5.3 1.5 3 23 221 241 220 241 0.97 6 12 1e-05 0.00088 20.9 1.0 1 23 245 268 245 268 0.96 7 12 0.38 33 6.5 0.2 3 21 275 293 274 294 0.91 8 12 0.11 10 8.1 0.3 3 23 303 324 301 324 0.89 9 12 8.6e-05 0.0076 17.9 0.5 1 23 331 354 331 354 0.95 10 12 0.028 2.5 10.0 1.3 1 23 359 381 359 381 0.95 11 12 7.6e-06 0.00067 21.2 0.4 1 20 387 406 387 409 0.94 12 12 0.00077 0.067 14.9 1.0 1 23 415 438 415 438 0.96
Sequence Information
- Coding Sequence
- ATGACCAACggctttttttttgttctagacGATGAACAAGCCGCATCCAGGCGGAACGGCCAAGTAGTCGTCAGACTAGCCGACCATTTTAGAGTAAGCCACGCCCAAGCTACATTCGTATGCTCGTACTGTGGAAAACACTACAAATTCAAGAACAGTCTAGATCGTCACGTCATAACGCATACACAGGAGAAGGGATATATGTGCGGATACTGCTCAAAGACGTTCCACGGGAAATCAAACTTGGTACAGCACATGTGGATACACAGCGAATATAAACGATTTGAGTACAACGATGCCTATCTCAACGCCAAAAGGAACGCCGAGATTATCGTGAAATATTCCACCGCGTACCCATTCAGGCTTCCAGAGAGTTCCATGGTCTGTGTGTACTGCTGTGAGAGTTATGACGATCCCAGTCTGTACAGAAAGCACATGAGCGATGACCACCAAACGTTTAAAGTCCGCACGGCATTCGTTCACTGCAGCGAAGGGTACATTAAAGCAGATTGCACAGAACTCCAATGCCGACTCTGTTCAGAACCCTTCGACACTTTAGCAGCGGTCGCTACTCATATCCACTTAGAACACGACAAGAAATTAAATATGATCTCCGAACTTGGCATACAGCCTTTCAAACTCGAAAAAGATAAGCTTCTATGTGCGATATGCAACGCGAAATTCCCTTGTATACGACAACTTAGTCGGCATACCCAAACACATTTCTTAAAATACACTTGCGATACTTGTGGCAAATCTTACGCAACCATCACTACGTTGAAGAATCATATTAGATTCTCTCACGCTGGCAATGAGAGGATATGTAGAAAATGTAGAATGACATTCTCTACTCTAGAAGCAAAACGTGAGCACTTACTGGTGTCCTCGAAATGCTGGTCCCATCTATGCGTGGTATGCGGCGAACGGTTCATGACGTGGACTTTAAAGCAGATCCATTTGGACCAAGTCCACAAGGCTCCTAAGAAATCACATCCCTGCCCTGAATGCGGCGAAGTATTCCCTGACCGGAAGAAATACCGCGTCCATTTCAAAATCTCCCACACTGACGACAACTACATGTGCACTTGTTGCGGTTTAAAATTCGATACGAAACGCGGCCTGGAAGAGCACAGAGTAGtccatactaaagaaaaattattCCCTTGCACTGTTTGTTCTAAATCGTTTCCTAGAAAAAAGAACTTGGCTCAACATATGTGGATACATAGCGAGTTTAAGCGGTTCGAGTGTGGACCTTGCAATAAGCAGTTTAATCAGAGGGTCAGTTGGCGGACGCATATGAGGTCATATCACCCGGATTTAGTCGATTATGAAGGGAAGACAAATGTTCGCGGCGAAGGACTTAAACTTAGGTCAATATCGTTACTAACCGACATCAAAGATACATGA
- Protein Sequence
- MTNGFFFVLDDEQAASRRNGQVVVRLADHFRVSHAQATFVCSYCGKHYKFKNSLDRHVITHTQEKGYMCGYCSKTFHGKSNLVQHMWIHSEYKRFEYNDAYLNAKRNAEIIVKYSTAYPFRLPESSMVCVYCCESYDDPSLYRKHMSDDHQTFKVRTAFVHCSEGYIKADCTELQCRLCSEPFDTLAAVATHIHLEHDKKLNMISELGIQPFKLEKDKLLCAICNAKFPCIRQLSRHTQTHFLKYTCDTCGKSYATITTLKNHIRFSHAGNERICRKCRMTFSTLEAKREHLLVSSKCWSHLCVVCGERFMTWTLKQIHLDQVHKAPKKSHPCPECGEVFPDRKKYRVHFKISHTDDNYMCTCCGLKFDTKRGLEEHRVVHTKEKLFPCTVCSKSFPRKKNLAQHMWIHSEFKRFECGPCNKQFNQRVSWRTHMRSYHPDLVDYEGKTNVRGEGLKLRSISLLTDIKDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -