Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421910.1:23187921-23197769[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.029 2.6 10.0 1.9 2 23 186 208 185 208 0.96

2 12 0.21 19 7.2 0.1 1 23 240 262 240 262 0.96

3 12 0.079 6.9 8.6 3.3 1 23 268 291 268 291 0.96

4 12 0.00036 0.031 16.0 6.9 1 23 297 319 297 319 0.98

5 12 0.14 13 7.8 0.1 3 23 329 346 327 346 0.91

6 12 0.0061 0.54 12.1 0.9 2 23 356 378 355 378 0.96

7 12 0.0025 0.22 13.4 1.0 1 23 410 432 410 432 0.98

8 12 0.00058 0.051 15.3 4.7 1 23 438 461 438 461 0.95

9 12 0.00075 0.065 15.0 4.2 1 23 467 489 467 489 0.98

10 12 4e-07 3.5e-05 25.3 0.5 1 23 495 517 495 517 0.99

11 12 1.9e-06 0.00017 23.1 0.1 1 23 523 545 523 545 0.97

12 12 0.0048 0.42 12.4 1.1 1 23 551 574 551 574 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.029	2.6	10.0	1.9	2	23	186	208	185	208	0.96
2	12	0.21	19	7.2	0.1	1	23	240	262	240	262	0.96
3	12	0.079	6.9	8.6	3.3	1	23	268	291	268	291	0.96
4	12	0.00036	0.031	16.0	6.9	1	23	297	319	297	319	0.98
5	12	0.14	13	7.8	0.1	3	23	329	346	327	346	0.91
6	12	0.0061	0.54	12.1	0.9	2	23	356	378	355	378	0.96
7	12	0.0025	0.22	13.4	1.0	1	23	410	432	410	432	0.98
8	12	0.00058	0.051	15.3	4.7	1	23	438	461	438	461	0.95
9	12	0.00075	0.065	15.0	4.2	1	23	467	489	467	489	0.98
10	12	4e-07	3.5e-05	25.3	0.5	1	23	495	517	495	517	0.99
11	12	1.9e-06	0.00017	23.1	0.1	1	23	523	545	523	545	0.97
12	12	0.0048	0.42	12.4	1.1	1	23	551	574	551	574	0.95

Sequence Information

Coding Sequence: ATGGACACCTGTAGAACCTGCCTCGTAACACCAGCTAAAAAGGATATTTCAGAcctggaaaaaaatataaacgatGACAGCAGAAAATGCATTGATATTATAGAGTTTTGTTTAGATATAAAGGTTACAGAAGACTCTAAAATAACAACTAAGCTATGTAACAGCTGCTTTAGTAAAATCATATCATATTACAAGTTTAAGTTACTCTCATTGAAAAATGATGCATATTTGAAATCTCTGGACCAACTGGAGCAGTCTAAAGACCAAAAACTGACAGTGTATGAAGACGAAAACGGAATTAAACACGAAAATTACTTGGAGTTGGACGATTTTGGTCCAACTGTGATAGAATATTGCAATAGAGACATAAAAACAGAAGTAGATGTTAAAGATGAAGATGTATTTGGGGATTTAGAATTAAATGTTAAGGAAGAGGATGGAATAGGAGATGTAGAGTCAGATGAAGAGTTACAGAgtgttgaacaaaaaaataaatatgaaaattgtGAGGAAACGAAAGAAGATTTATCACAAAACATTAAGCAGCAATTCTTGAAATGCAAAGCTTGCCCAAAGATGTTTGAGTCCACGAAGGGGCGAAACAGACATTACCAAACCAAGCACTTAGGAAAAAAGTCCAAATGTGATGTTTGTAATAAAGAGGTAGTGTGCCTGTCGACGCACAAGCTGCGCGTGCACAACCCGTCGCGCATGCGGTTCAGCTGCGCGACGTGCGCGCGCCGCTTCGTGTCGCGCGCCGTGCTGGACCTGCACGTGCTCTCGCACACCAAGGACTACCGCTTCCAGTGCGATCTGTGCCAGAAGAAGTTCAGCTGCAAGCCTATTCTCTCTAAACATATgCGGCAGATCCATGACAAAGAGAGGAACCACAAATGTGAACATTGCCCTAAGGCATTCTTTGACAAACATAGACTACAAGAACATTTAAGATCGCACACTAAAGAAAGAAAGAGTAGTCAAATATGTGAAGAGTGTGGCAAGGCAGTTGCCAACCTCAGGGAGCATATGCTCAGTCACCAGCCCAAGGACGAGCGGCGCCTGCTGAAGTGCAAGGCTTGTCCCAAGACCTTCTACACCATCGGCGGACGGAAGAGACATTACAGGGTGTCGCATTTGGGCAAGAAGCCCACGTGTGATATTTGTAATAAACAGGTAGTGTCTGTGTCGGATCACAAGAAGCGCGTGCACGACACGGCCGAGCTCCCGTTCGTGTGCCTGGAGTGCGGCCGCCGCTGCTTGTCCAAGTCACTGTTGGACGTGCACATGCTCACGCACACTAAGGACTTCCAGCACGAGTGCGAAACTTGTCAGAAGAAGTTTAGTACCAAGACTTTCCTTTCAAAGCACAAGCGGGAGGTGCATGAAAAAGAGAAGAACCATCAATGTGAATTTTGTTCTAAAGCTTTCTTCAGCAAACAGAGACTAAAAGAACACATAAGGTCGCACACAAACGAGCGTCCATACACGTGCGGCGATTGCGGGCTGTCGTTCATAACCAAGCAGTCGCTCACGAGGCACCTGCTCACGCACAGCGACGTCAAGAACTACCCGTGCAAGCTGTGCGGCATGAGCTTCAGAGTGCCCGGGAATTTGAAGACGCATATGGTCTCGCACACGAAGGAGAAGCGTTACCCGTGCGGGTTCTGTGGCGTGCGCTTCGGCCGCTCCGACCACCGCAACCGACATGAGTTTACAGCACACAAGAAACACGGGCTGTCGAAAATGGACAAGAAATTGGAAAAAACTCAGGATAGTTAG
Protein Sequence: MDTCRTCLVTPAKKDISDLEKNINDDSRKCIDIIEFCLDIKVTEDSKITTKLCNSCFSKIISYYKFKLLSLKNDAYLKSLDQLEQSKDQKLTVYEDENGIKHENYLELDDFGPTVIEYCNRDIKTEVDVKDEDVFGDLELNVKEEDGIGDVESDEELQSVEQKNKYENCEETKEDLSQNIKQQFLKCKACPKMFESTKGRNRHYQTKHLGKKSKCDVCNKEVVCLSTHKLRVHNPSRMRFSCATCARRFVSRAVLDLHVLSHTKDYRFQCDLCQKKFSCKPILSKHMRQIHDKERNHKCEHCPKAFFDKHRLQEHLRSHTKERKSSQICEECGKAVANLREHMLSHQPKDERRLLKCKACPKTFYTIGGRKRHYRVSHLGKKPTCDICNKQVVSVSDHKKRVHDTAELPFVCLECGRRCLSKSLLDVHMLTHTKDFQHECETCQKKFSTKTFLSKHKREVHEKEKNHQCEFCSKAFFSKQRLKEHIRSHTNERPYTCGDCGLSFITKQSLTRHLLTHSDVKNYPCKLCGMSFRVPGNLKTHMVSHTKEKRYPCGFCGVRFGRSDHRNRHEFTAHKKHGLSKMDKKLEKTQDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -