Lstr026304.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421915.1:11075539-11089627[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.037 3.2 9.7 1.0 1 23 306 328 306 328 0.96 2 25 0.004 0.35 12.7 0.4 2 23 336 357 335 357 0.94 3 25 0.9 79 5.3 0.8 1 23 361 383 361 383 0.97 4 25 0.0041 0.36 12.7 0.9 1 23 388 411 388 411 0.98 5 25 0.037 3.2 9.6 0.1 1 23 415 438 415 438 0.94 6 25 0.021 1.9 10.4 0.1 2 21 456 475 456 480 0.92 7 25 0.73 64 5.6 0.4 3 23 490 511 490 511 0.93 8 25 0.73 64 5.6 0.4 3 23 548 569 548 569 0.93 9 25 0.73 64 5.6 0.4 3 23 606 627 606 627 0.93 10 25 0.73 64 5.6 0.4 3 23 664 685 664 685 0.93 11 25 0.73 64 5.6 0.4 3 23 722 743 722 743 0.93 12 25 0.73 64 5.6 0.4 3 23 780 801 780 801 0.93 13 25 0.73 64 5.6 0.4 3 23 838 859 838 859 0.93 14 25 0.73 64 5.6 0.4 3 23 896 917 896 917 0.93 15 25 0.73 64 5.6 0.4 3 23 954 975 954 975 0.93 16 25 0.73 64 5.6 0.4 3 23 1012 1033 1012 1033 0.93 17 25 0.73 64 5.6 0.4 3 23 1070 1091 1070 1091 0.93 18 25 0.73 64 5.6 0.4 3 23 1128 1149 1128 1149 0.93 19 25 0.73 64 5.6 0.4 3 23 1186 1207 1186 1207 0.93 20 25 0.73 64 5.6 0.4 3 23 1244 1265 1244 1265 0.93 21 25 0.73 64 5.6 0.4 3 23 1302 1323 1302 1323 0.93 22 25 3.4e-05 0.003 19.2 0.5 1 23 1370 1392 1370 1392 0.98 23 25 5.2e-05 0.0046 18.6 2.0 1 23 1398 1420 1398 1420 0.99 24 25 8.4e-05 0.0074 18.0 0.8 1 23 1426 1448 1426 1448 0.98 25 25 0.00017 0.015 17.0 0.2 1 23 1454 1477 1454 1477 0.98
Sequence Information
- Coding Sequence
- atGGAAGACATAAAAGTTTGTCGAATATGCCTTGTTATGGGAGTAAAGATGTACAACTTGCATTCATATCCATTGTATGGCTACTTTGAATCTCTAATTGGTATCAACCCACTAAGTATGATGGAACTCCCTCCGTATGGATGTTATGAATGTACTGCACTGATGAAGAAGCTGTATCACTTTAAGGAGAAATGTCTCGTTGGTCAGACAGAACTTTATACAATGTTGGAGACAAAGGGGAAGATTACACCAGAAACTTTAAGCACTATAGACCGTCGTCACCtaaaattaatatcaaattTAACAATATACCAGGACAACAACATTATATCCCATGTACACAACAATACTGACGTTGAAGTTAAAACAGAATCTCACAAACCAAATAATTTTCTCATAGAAATAGACTGTATCAAGCAAGAAGATTATGATGACTTCCAAATGACAAATATGTCTAGTGATGATGAGCCTCTATCATTACAAAAGAGtcttaaagagaaaaaaaaggcTGGGAAGAAAAAGGAAAAGAAGGGACGGATGAAAAGAGAGAAGGAGGAAATTAGGTTAGATTGTAATGGGGAGTCACAAGGTTTTGAGGCAACAATTGATGTATCGGCACCTGAGCTCCCAGAGGTTCCAGAAGCATCAGAAATCCCAGATACCTCAGAGGTTCCAGATACCTCAGACACTCCAGAGGTCTCAGAGGTCCCGAAAAGGAAACGTGGCAGGCCGCGGCAATCAGAGACCAAGGACAAAGAAGCTAAGCCGAAGTCAAGGAGAACTCGGAATACGGGCGGAGTGGGGGTAGATGACATAGATTTGGAGGAGTATGTCACTGTTGTTAAGTTGACCACTGAAGAGCAGCTGGCCGAGATCAACAAACGACAGCAGTCGTCAAACTACCTGAACGCCCCGTTCCAGTGTAATTTATGCTACAAGGGATTCATCGACTCACTAGCCTGGAAACACCACGTGGGCAAACACGATCCGAGTGCTGGCGACGTGGAGTGCGCCATTTGCAAGTTCCGTTTCCGATCTCGTCGGGCACTACAGAAGCACGCCGCCAACCATGAGAAGAAATACGCCTGCCGGTCTTGTCCCTACATCTCCAAGACGACGACTCAAGCAAAACAACATCAGCGATGGCATAAAGGCGTTACGTACAAGTGCCAGTACTGCGACGAGATATCTACTAAATGGACGTCGTATCTAAGCCACGTGCGTATCAAGCACCCCTCAGAGTTCATATGCGGCGTGTGTGGATACTCTTACGTCAGCAAACTTGGCCTGGCCATGCACAAGACCATGATGCATAAGGACTATGTTGAAAAGACTGAACCAGACGCGGACAAGAAGCCGGGCCCGTACTGCCAGGACTGCGACGTGCAGTTCGTCACCGAGGAGGCGTGGAAGCGGCACATGGTCACCTCCGCCAAGCACGCGCCTACTAACGATTTCAAGAATGGGTGCCGCGCGTGCGGCAACGTGTTCGCGACGGGCGAGGAGCTGCGGCTGCACCACCGCGCGCAGCACGCGCGGCGCCGCCCCAAGAACTACGGCAAGAAGCGCGACCACGGCTGGCCCGCGCCCTGCGACCACGTCAGTACCACtgctatactatactatatacggGTTAATGGGTGCCGCGCGTGCGGCAACGTGTTCGCGACGGGCGAGGAGCTGCGGCTGCACCACCGCGCGCAGCACGCGCGGCGCCGCCCCAAGAACTACGGCAAGAAGCGCGACCACGGCTGGCCCGCGCCCTGCGACCACGTCAGTACCACtgctatactatactatatacggGTTAATGGGTGCCGCGCGTGCGGCAACGTGTTCGCGACGGGCGAGGAGCTGCGGCTGCACCACCGCGCGCAGCACGCGCGGCGCCGCCCCAAGAACTACGGCAAGAAGCGCGACCACGGCTGGCCCGCGCCCTGCGACCACGTCAGTACCACtgctatactatactatatacggGTTAATGGGTGCCGCGCGTGCGGCAACGTGTTCGCGACGGGCGAGGAGCTGCGGCTGCACCACCGCGCGCAGCACGCGCGGCGCCGCCCCAAGAACTACGGCAAGAAGCGCGACCACGGCTGGCCCGCGCCCTGCGACCACGTCAGTACCACtgctatactatactatatacggGTTAATGGGTGCCGCGCGTGCGGCAACGTGTTCGCGACGGGCGAGGAGCTGCGGCTGCACCACCGCGCGCAGCACGCGCGGCGCCGCCCCAAGAACTACGGCAAGAAGCGCGACCACGGCTGGCCCGCGCCCTGCGACCACGTCAGTACCACtgctatactatactatatacggGTTAATGGGTGCCGCGCGTGCGGCAACGTGTTCGCGACGGGCGAGGAGCTGCGGCTGCACCACCGCGCGCAGCACGCGCGGCGCCGCCCCAAGAACTACGGCAAGAAGCGCGACCACGGCTGGCCCGCGCCCTGCGACCACGTCAGTACCACtgctatactatactatatacggGTTAATGGGTGCCGCGCGTGCGGCAACGTGTTCGCGACGGGCGAGGAGCTGCGGCTGCACCACCGCGCGCAGCACGCGCGGCGCCGCCCCAAGAACTACGGCAAGAAGCGCGACCACGGCTGGCCCGCGCCCTGCGACCACGTCAGTACCACtgctatactatactatatacggGTTAATGGGTGCCGCGCGTGCGGCAACGTGTTCGCGACGGGCGAGGAGCTGCGGCTGCACCACCGCGCGCAGCACGCGCGGCGCCGCCCCAAGAACTACGGCAAGAAGCGCGACCACGGCTGGCCCGCGCCCTGCGACCACGTCAGTACCACtgctatactatactatatacggGTTAATGGGTGCCGCGCGTGCGGCAACGTGTTCGCGACGGGCGAGGAGCTGCGGCTGCACCACCGCGCGCAGCACGCGCGGCGCCGCCCCAAGAACTACGGCAAGAAGCGCGACCACGGCTGGCCCGCGCCCTGCGACCACGTCAGTACCACtgctatactatactatatacggGTTAATGGGTGCCGCGCGTGCGGCAACGTGTTCGCGACGGGCGAGGAGCTGCGGCTGCACCACCGCGCGCAGCACGCGCGGCGCCGCCCCAAGAACTACGGCAAGAAGCGCGACCACGGCTGGCCCGCGCCCTGCGACCACGTCAGTACCACtgctatactatactatatacggGTTAATGGGTGCCGCGCGTGCGGCAACGTGTTCGCGACGGGCGAGGAGCTGCGGCTGCACCACCGCGCGCAGCACGCGCGGCGCCGCCCCAAGAACTACGGCAAGAAGCGCGACCACGGCTGGCCCGCGCCCTGCGACCACGTCAGTACCACtgctatactatactatatacggGTTAATGGGTGCCGCGCGTGCGGCAACGTGTTCGCGACGGGCGAGGAGCTGCGGCTGCACCACCGCGCGCAGCACGCGCGGCGCCGCCCCAAGAACTACGGCAAGAAGCGCGACCACGGCTGGCCCGCGCCCTGCGACCACGTCAGTACCACtgctatactatactatatacggGTTAATGGGTGCCGCGCGTGCGGCAACGTGTTCGCGACGGGCGAGGAGCTGCGGCTGCACCACCGCGCGCAGCACGCGCGGCGCCGCCCCAAGAACTACGGCAAGAAGCGCGACCACGGCTGGCCCGCGCCCTGCGACCACGTCAGTACCACtgctatactatactatatacggGTTAATGGGTGCCGCGCGTGCGGCAACGTGTTCGCGACGGGCGAGGAGCTGCGGCTGCACCACCGCGCGCAGCACGCGCGGCGCCGCCCCAAGAACTACGGCAAGAAGCGCGACCACGGCTGGCCCGCGCCCTGCGACCACGTCAGTACCACtgctatactatactatatacggGTTAATGGGTGCCGCGCGTGCGGCAACGTGTTCGCGACGGGCGAGGAGCTGCGGCTGCACCACCGCGCGCAGCACGCGCGGCGCCGCCCCAAGAACTACGGCAAGAAGCGCGacctgaggctcaggTGTTCAGAGGAGATCCCGAACGCGCGAGAATATTGGACGCACTTCCGTCGGGCACACCCCGACAAGCCGTACCCCATTCAGAAGAATTACATCTGCGATATTTGTGGCAAGAGTTTTAGGGGCAACGCGTTCCTCGTATACCACAAGCGCACACACTTCGAAGAGCGGGCCTACAAATGTGCAGTCTGCCCTAAGGCGTTCCACAACCGGACCAACTTGCAGATGCATGAGAAAACACACTCCGACGCCCGGCCTTACCCGTGCTCAGTGTGTTTCAAGGCTTTTAAGAGTAAAGGCGCCCTTGATAGACACTTTAGGAGTCACACAGGAGTAAAACCATACGAGTGTGAAGTATGCGGCAAGGCGTTCGGGCAGTCCAACAGCCGGAAGCTGCACGTACGTACCGTGCACCTCCGGCAACCCGCCCCGTACGTCAGTCGCGCGAGGAAACGGCGGCCGCTGCTCGACGCACCTACACTGTGA
- Protein Sequence
- MEDIKVCRICLVMGVKMYNLHSYPLYGYFESLIGINPLSMMELPPYGCYECTALMKKLYHFKEKCLVGQTELYTMLETKGKITPETLSTIDRRHLKLISNLTIYQDNNIISHVHNNTDVEVKTESHKPNNFLIEIDCIKQEDYDDFQMTNMSSDDEPLSLQKSLKEKKKAGKKKEKKGRMKREKEEIRLDCNGESQGFEATIDVSAPELPEVPEASEIPDTSEVPDTSDTPEVSEVPKRKRGRPRQSETKDKEAKPKSRRTRNTGGVGVDDIDLEEYVTVVKLTTEEQLAEINKRQQSSNYLNAPFQCNLCYKGFIDSLAWKHHVGKHDPSAGDVECAICKFRFRSRRALQKHAANHEKKYACRSCPYISKTTTQAKQHQRWHKGVTYKCQYCDEISTKWTSYLSHVRIKHPSEFICGVCGYSYVSKLGLAMHKTMMHKDYVEKTEPDADKKPGPYCQDCDVQFVTEEAWKRHMVTSAKHAPTNDFKNGCRACGNVFATGEELRLHHRAQHARRRPKNYGKKRDHGWPAPCDHVSTTAILYYIRVNGCRACGNVFATGEELRLHHRAQHARRRPKNYGKKRDHGWPAPCDHVSTTAILYYIRVNGCRACGNVFATGEELRLHHRAQHARRRPKNYGKKRDHGWPAPCDHVSTTAILYYIRVNGCRACGNVFATGEELRLHHRAQHARRRPKNYGKKRDHGWPAPCDHVSTTAILYYIRVNGCRACGNVFATGEELRLHHRAQHARRRPKNYGKKRDHGWPAPCDHVSTTAILYYIRVNGCRACGNVFATGEELRLHHRAQHARRRPKNYGKKRDHGWPAPCDHVSTTAILYYIRVNGCRACGNVFATGEELRLHHRAQHARRRPKNYGKKRDHGWPAPCDHVSTTAILYYIRVNGCRACGNVFATGEELRLHHRAQHARRRPKNYGKKRDHGWPAPCDHVSTTAILYYIRVNGCRACGNVFATGEELRLHHRAQHARRRPKNYGKKRDHGWPAPCDHVSTTAILYYIRVNGCRACGNVFATGEELRLHHRAQHARRRPKNYGKKRDHGWPAPCDHVSTTAILYYIRVNGCRACGNVFATGEELRLHHRAQHARRRPKNYGKKRDHGWPAPCDHVSTTAILYYIRVNGCRACGNVFATGEELRLHHRAQHARRRPKNYGKKRDHGWPAPCDHVSTTAILYYIRVNGCRACGNVFATGEELRLHHRAQHARRRPKNYGKKRDHGWPAPCDHVSTTAILYYIRVNGCRACGNVFATGEELRLHHRAQHARRRPKNYGKKRDHGWPAPCDHVSTTAILYYIRVNGCRACGNVFATGEELRLHHRAQHARRRPKNYGKKRDLRLRCSEEIPNAREYWTHFRRAHPDKPYPIQKNYICDICGKSFRGNAFLVYHKRTHFEERAYKCAVCPKAFHNRTNLQMHEKTHSDARPYPCSVCFKAFKSKGALDRHFRSHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLRQPAPYVSRARKRRPLLDAPTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -