Lstr040306.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421927.1:8655267-8673562[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.56 49 5.9 5.6 1 23 125 148 125 148 0.98 2 11 0.0011 0.097 14.4 0.5 2 23 156 177 156 177 0.95 3 11 1.1 95 5.0 0.9 1 20 181 200 181 203 0.85 4 11 7.4e-05 0.0065 18.1 2.7 1 23 208 231 208 231 0.96 5 11 0.00034 0.03 16.0 0.1 2 23 240 262 240 262 0.94 6 11 0.17 15 7.6 0.1 3 23 301 322 300 322 0.92 7 11 3e-05 0.0026 19.4 0.7 1 23 327 350 327 350 0.95 8 11 4.2e-05 0.0037 18.9 0.1 3 23 379 399 378 399 0.98 9 11 0.00018 0.016 16.9 0.1 1 23 405 427 405 427 0.96 10 11 0.037 3.3 9.6 1.8 2 23 434 455 433 455 0.95 11 11 3.5e-06 0.00031 22.3 0.4 1 23 461 484 461 484 0.96
Sequence Information
- Coding Sequence
- ATGTTGCTGGAAAGTATGAAAGAGACGGAGCTACAAGAGGAGGATATTAAAGCGGGCCTAAGCGAGATGGAGATAAAAGTGGAAGAGCCTGTCAAGAAAAGGAAAGAGAAGGGGAGAGAAAAGACAAAAGTAAAAAGAGACAAGAGCATAAAGACAAAGAAGAAAATCCGGAAGGTAAAAGAAGTAGAAGAAGAGAAGGAGCCGAAGAAATACAAACGGAAACTGAAGGGATTCAAGAAGTTCTTTGCCAGTGAAGACGATTACATCAAGTTTGAGAACACAtacaatatagaaATAGTAAAACTATCAGAGGAAGAACAGCAGAAAGAGTTAAACGCACGCAAAGAGTCGAGCAACTACTTGCGCTCGGCGTATCGCTGCGAGAGGTGCTTTAAAGGATTTCTGTCGCACACCACGTTTGAGAACCACCAGAAAAAAACTCATGACCCGAGTAACGGTCGCAACGAATGTGTTTTGTGCGGAGCACGCTTCCGCCATCCAGCAGGGCTCAGAAAACATTTTGAGTCGCACACGCTCAAGTTTATCTGCAAGATCTGCCAGTTTATGACTCGTCACCGGAGCATGGCAGTCATGCACGCAGACTTCCACTCCGGCAAGACGTTTGATTGCAAGTACTGCGGACTGACCTTTAATAAACAGACCACGTTCAACACGCACACGCGCGTTCAGCACCCGCTGGAGAACGCGTCGGCCGGCACCTGCGACGTGTGTGGCGAGACCTTTACCGGCAAACGAGGGCTGCAGCAGCATAAAGCCATCGCACATAAAAAGCTGACGACGCCAGAGTTAAAATGCCGCTCGTGCCTGGTGCAGTTCGAGAACGTGGATGCGAAGACGAGGCACAAGATAAACAACGTTTGCGATCCCAAATTAAGGCCGTGCCCGGCGTGCGGCGAGCGGTTCGACGACGAGAACACTGCGAAGACACACTACCAGGACAACCATGTTAAGGAACATTATAAATGTGACCAGTGTGATACGACATTCGCGAAGAAATCGTCGCTAGCCGTTCACTTCGAGCGAGTGCACCTCAAGATCAAACCAAAGAAACCTGCCTTTTACAAATACCACCAATACGGGAAAGGGCGGATGAAGATACGGAACGCGGAGATTTGCGAGATTTGCGGGAAAGGGTACCCGGACACGACGTGGCTGCGGTACCACCAGCGCACGCACACGGGCGAGCGGCCCTACAAGTGCGCGCAGTGCACAAAAAGCTACATGACCCCCGCAGGATTACAGCGTCATGTGGTGATACACACTGGTGTGCGGCGCTGGCAATGCTCTCAGTGCCCCAAAACCTTCCTGCACCAGTCTTCCATCTACACGCACAAACTGGTACACACGGGGGAGAAACCATACGTCTGCCAAATCTGCAGCAAGGCCTTCACGCAGTCGGGCTCCTTACAGACTCACGTCAAGTACGTGCACATGAAGCTCAAGccaccgccgcgccgccgccgacaggAGCTTTATAAACCGCCCAGCTGA
- Protein Sequence
- MLLESMKETELQEEDIKAGLSEMEIKVEEPVKKRKEKGREKTKVKRDKSIKTKKKIRKVKEVEEEKEPKKYKRKLKGFKKFFASEDDYIKFENTYNIEIVKLSEEEQQKELNARKESSNYLRSAYRCERCFKGFLSHTTFENHQKKTHDPSNGRNECVLCGARFRHPAGLRKHFESHTLKFICKICQFMTRHRSMAVMHADFHSGKTFDCKYCGLTFNKQTTFNTHTRVQHPLENASAGTCDVCGETFTGKRGLQQHKAIAHKKLTTPELKCRSCLVQFENVDAKTRHKINNVCDPKLRPCPACGERFDDENTAKTHYQDNHVKEHYKCDQCDTTFAKKSSLAVHFERVHLKIKPKKPAFYKYHQYGKGRMKIRNAEICEICGKGYPDTTWLRYHQRTHTGERPYKCAQCTKSYMTPAGLQRHVVIHTGVRRWQCSQCPKTFLHQSSIYTHKLVHTGEKPYVCQICSKAFTQSGSLQTHVKYVHMKLKPPPRRRRQELYKPPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01072862;
- 90% Identity
- iTF_01072862;
- 80% Identity
- -