Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421912.1:6043689-6062076[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00045 0.04 15.7 2.5 1 23 241 263 241 263 0.97

2 10 0.035 3.1 9.7 2.9 1 14 269 282 269 283 0.89

3 10 0.0004 0.035 15.8 6.5 1 23 287 309 287 309 0.96

4 10 0.016 1.4 10.8 8.1 1 23 315 337 315 337 0.98

5 10 1.2e-05 0.001 20.7 0.9 1 23 343 365 343 365 0.97

6 10 7.4e-06 0.00065 21.3 0.0 1 23 371 393 371 393 0.98

7 10 8.9e-05 0.0078 17.9 0.4 1 23 398 420 398 420 0.96

8 10 2.4e-05 0.0021 19.7 0.4 1 23 562 584 562 584 0.98

9 10 0.002 0.18 13.6 3.3 1 23 648 670 648 670 0.96

10 10 4.7e-05 0.0041 18.8 4.3 1 23 680 702 680 702 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00045	0.04	15.7	2.5	1	23	241	263	241	263	0.97
2	10	0.035	3.1	9.7	2.9	1	14	269	282	269	283	0.89
3	10	0.0004	0.035	15.8	6.5	1	23	287	309	287	309	0.96
4	10	0.016	1.4	10.8	8.1	1	23	315	337	315	337	0.98
5	10	1.2e-05	0.001	20.7	0.9	1	23	343	365	343	365	0.97
6	10	7.4e-06	0.00065	21.3	0.0	1	23	371	393	371	393	0.98
7	10	8.9e-05	0.0078	17.9	0.4	1	23	398	420	398	420	0.96
8	10	2.4e-05	0.0021	19.7	0.4	1	23	562	584	562	584	0.98
9	10	0.002	0.18	13.6	3.3	1	23	648	670	648	670	0.96
10	10	4.7e-05	0.0041	18.8	4.3	1	23	680	702	680	702	0.97

Sequence Information

Coding Sequence: ATGTGTATGCCTACGCCGAGCAATGTCTCGGGCTTCGGGTACCAGTGGGGCTTCACGAGTTCGGGGGATCTAACGAAGGGCGAGGTTGACACTCCTAGCAGCCTCAGCTACACCCTAGGGAGTACGGTGTCCCCCGAAACTACACTAACTGTGATGTCACACAAGACACCACAGGTCCAAGAAAAGGTGGGAACTGTGTCTGTAGCCGTCAGCAATACTGGTACACAAGTTACGAGGGTTGTGACCGCTGGGACTCCAGTAACGGCTAGGAGGGCTATGTTTGTGCTGAATGAGACACCACATACAATCAACAGAGTTTCACAGAATCAGACAGCAACTATACAGACTACAAACCTCGCGTCGAAGCCCTTTATGACCCCAATTGGCCCAATCCAGCTGACAGCTGAAGAATGCAACGAGATTCTCATGAAGCGAGCCCTGCAAGCGCAGGGTATCGCTACACCAGCAGTCATAGATGCTTCACAGATCAACCATACTATACTGAATGGCAGTTTGAAGAGTTTGGCTGAGGCAACGACGCAACAGGCTCAGGTGGAGACGATACAGACGACAACGGGACATCAGCATCATCAGTTGATGCATACAAAGCAGGAGCCTGGGACTGCTAATAATTCGCCTAAAGCGGTGTATTCGCAGACGGAGCTAATGACAACAACGAGCATGTCAGCGGCTCCCCCTGCCGCGATAAAGGAGCGCCCATACGCGTGTGAAGAGTGCGGCAAGTCCTTTCTGTTGAAGCACCATCTCACTACGCACGCCAGGGTGCATACTGGCGAGCGCCCCCACGCATGCCCCCACTGCGGCAAAACGTTCGCCCACAAACACTGTGAGCGGCCACACGTTTGCGCGCACTGCGGGAAGGCGTTTGCGAGGAAGCATTGCTTGAATACGCATTTGCTGCTGCACTCGGCGGATCGGCCGTTTAGGTGCCACGAGTGTAAGATGGCGTTTACGTTGAAGCATCATTTGGTTACGCATTCTAGGTACCACGCCGGCGAGCGGCCCTACGTCTGCAGCGACTGCGGCGAGAGCTTCGCGCAGAAGGAGCACCTCGTGAtgcacagccgcttccacggctCGCTGTCGCCGTTCGTGTGCCCCGACTGCGGCGTGGCGTTCGCGCGCAAGTTCCAGCTCGTCAACCACGGCCGCGTGCACGGCCGCGTGCCGCACGCCTGCCCCGTCTGCGGGAAGGAGTTCCTGCAGAAACGCACGCTCGTCGCGCACATGAAAATTCACACGGGTGAAGGAGTGGTGGCGTGTTTGGAGTGTGGAGAGGCGTTCAAATGCAAGACAGAGATGCAGCAACACTGCAAGATTTCGCGCCACTGTATGAATGGTAGCATCACGCAGCAGACACAGCAACAGCAGGTCCAACAACAAAACACACAGCAACAGCagcagcaacaacaacaacagcaaCAACAGGCTCAACAACAAGTGCACCAACAACAGCAACAGGCTCAACAACAAGCTCAGCAACAGGCGCAACAACAACAGCAACAGCAGCagcagcaacaacaacaacagcagCAGCAACAGCAACAACagcagcaacaacaacaacagacCACGGTTATAAAACAGGATGATTTCAAACCGCAAATTGTTCATCTTATCGGAGCCGATGGTCAAATAGTGACGGAAAAGGTGACGCCTGGGTACCCCTGTCCAGAGTGTGGTTCCTGCTTTAACACTAAGGAGGCGCTGTCGCTGCACGTGCGGCTGCACGCGGGCGACCGCACGTGCGTGACGGACCTGTGCGCGCTCACGGCGGCGCTGCAGCCCGGCCTGGTGCACCAGCACCACCAGCACCACAACCAGCCGATACAAATCATATCTTCAAACCCAAACAACGTAGTACACACGCAAGTAATTTCCActCAAAATCATCACATAGCAACGCCGCGGCCGAAGATCCACTTTTGTGTAGATTGTGGGAAAGGATTCGCGGCGAAACATGGTCTATTAGCGCATCACAGAAGACATCCAGACGGAGGCTGCACGGTCAGGACGCACGTGTGCGACCAGTGCGGGAAAGCCTTCTTCCAGAAAAACCACCTCATGCTGCATCAGAGACAACACATGGACTTACCGCCTAGAAATAGAGACACGAGTAATAACGACAATGGGGCGATAATCATGATAACAGGACACTCAAAGAACTTCCAATCACAACAACAACAGGTGCAGCAACAAGCACAACAACAGGCTCAGCAGCAGGCACAACAACAGGCGCAACAACAGAGGGAAAAGGGGGCCGAGAAATGA
Protein Sequence: MCMPTPSNVSGFGYQWGFTSSGDLTKGEVDTPSSLSYTLGSTVSPETTLTVMSHKTPQVQEKVGTVSVAVSNTGTQVTRVVTAGTPVTARRAMFVLNETPHTINRVSQNQTATIQTTNLASKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPAVIDASQINHTILNGSLKSLAEATTQQAQVETIQTTTGHQHHQLMHTKQEPGTANNSPKAVYSQTELMTTTSMSAAPPAAIKERPYACEECGKSFLLKHHLTTHARVHTGERPHACPHCGKTFAHKHCERPHVCAHCGKAFARKHCLNTHLLLHSADRPFRCHECKMAFTLKHHLVTHSRYHAGERPYVCSDCGESFAQKEHLVMHSRFHGSLSPFVCPDCGVAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGVVACLECGEAFKCKTEMQQHCKISRHCMNGSITQQTQQQQVQQQNTQQQQQQQQQQQQQAQQQVHQQQQQAQQQAQQQAQQQQQQQQQQQQQQQQQQQQQQQQQQQTTVIKQDDFKPQIVHLIGADGQIVTEKVTPGYPCPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVHQHHQHHNQPIQIISSNPNNVVHTQVISTQNHHIATPRPKIHFCVDCGKGFAAKHGLLAHHRRHPDGGCTVRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRNRDTSNNDNGAIIMITGHSKNFQSQQQQVQQQAQQQAQQQAQQQAQQQREKGAEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289940;
90% Identity: iTF_00156522;
80% Identity: -