Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421928.1:3544926-3559130[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.29 25 6.8 4.5 1 23 459 481 459 481 0.97

2 9 1.2e-05 0.001 20.7 1.8 1 23 527 550 527 550 0.97

3 9 0.0083 0.73 11.7 0.0 2 23 556 577 556 577 0.97

4 9 3.5e-06 0.00031 22.3 1.2 1 23 583 605 583 605 0.97

5 9 0.011 0.97 11.3 4.7 1 21 610 630 610 632 0.94

6 9 2.2e-06 0.00019 23.0 1.5 1 23 641 663 641 663 0.99

7 9 2e-06 0.00017 23.1 1.3 1 23 669 692 669 692 0.97

8 9 0.00043 0.038 15.7 1.7 1 23 698 721 698 721 0.96

9 9 0.0017 0.15 13.8 1.3 1 23 729 752 729 752 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.29	25	6.8	4.5	1	23	459	481	459	481	0.97
2	9	1.2e-05	0.001	20.7	1.8	1	23	527	550	527	550	0.97
3	9	0.0083	0.73	11.7	0.0	2	23	556	577	556	577	0.97
4	9	3.5e-06	0.00031	22.3	1.2	1	23	583	605	583	605	0.97
5	9	0.011	0.97	11.3	4.7	1	21	610	630	610	632	0.94
6	9	2.2e-06	0.00019	23.0	1.5	1	23	641	663	641	663	0.99
7	9	2e-06	0.00017	23.1	1.3	1	23	669	692	669	692	0.97
8	9	0.00043	0.038	15.7	1.7	1	23	698	721	698	721	0.96
9	9	0.0017	0.15	13.8	1.3	1	23	729	752	729	752	0.95

Sequence Information

Coding Sequence: ATGTTACACAACAGTGGGCCTTATGGGCCGAACGATGTACCTATAAATATGGGAATGCCTGTGAATATGACCCAAATGTCAAATCCGATCAATTTAGGCAATAACTTGGGTAACTTGGGCAAAACGCCTCAACAGGCGCCACAAACGACAGCTCCTGCCTACGACATGCCGGATTATGCATCGTTTAGTCGTCCGCCGTTGAATATGGGTCACCCTATGACCCCCTTTCCAAACTATCATCCTCTCAACTTCCAAACCAGCTATGGACATTCTAATCCGAATTTGCCACATAATACGACACCACGCAACCTCGAACACAGTACGCTGCCCATGAATTTAAATGCTCAAAGCGATCACGGGCCAAGTTTGACGAATTACCACAATTTTGATAGCAAAAAGTTCGATATAAATAATGCACAATACAGagaaaatgtcaataaaaaagtacctataaatattCCCCAAATACATACGAAAGCGTTCCAAAAACATCTGGGAATGAACACAAATAATAGTCAGTTTAATTCTGCACAAGAAAACCCATACAGTCATGATTTGTCAAAACCATCAGAAAAATCCTTAATAGACAGTAGCAGAAGAAAAAGCTTAGAAAACACGGTTAAACTTatcgaaaatattcttataaataGTACACCTAAAGATAAGTCCAAAAATATGGAGTCATTTTCTCATTCAACAAGTACAAATCATTTGAGAAACTTATTACAAAGGTCAGTTGACGGAAATAAAGATGAACATAACATAAACCAGAGCTCAAGTCATAGACAAACTGTGGTGCATGATTCAAATACTACAGATTTACAAACTACTCATTCAAATACGACAGAAGCAAACTCGGACATCCAAAACTTAAGTATAAATTTGAGCAGTAAAAAACCAGAGCAACTTGCTGATGTAAACCCGAATATGAACAAAGATGACACAAAATCATCAAAACAAAatgacacaaaaacaaagaatttaagtaaaataaaaaacacaaaattgtCTGTAGAAAAAGAAACGGGAACAAAAATTCAAAGTGAAATTCATTCGGAACCTTTAAGACGGAGTCTTATACATAATAACCGAAGAGCAAGAGATGAAGAACCAAGAGAAGAAAATGTAGAAATGGATTCGGAGAATGAGGAATTGATACCAGCGGCTGACATCAAGAAAGAGATTATAGAGGAGGATGTAGTTCAAATAAAgGTGGAACTGGTTGAATGCAGTGATATTGAGACCTCATCATTCCTTAGGGACACCCATGCAACGACCAAGGATAGCTTGGAAGCGGATGCAGTTGTTATTGATAGTAATAATGTTGCTGAAGCTAAAGAAGCAGTTAAAAAGGgttCAAATCCAAAAGCATACTTCGAATGCTCCCACTGCAACCTCCTCTTCAATCATCCAAAGCGGTTCCTCATCCACACAAAATGGCATACGTTCGGGTTGACCAGCGAGAAGCTGCATAGATTGGAGAAAGAGAGAGAGCTACGGAAGACTATGAAGAGAGAAGCCAGGATTGTTGAGAGgttgAACGTGAATGAAGCGAAAGAGGGCGAAGAAGGCGACAGATTTCCGTGTAAGGACTGCGATAAGGTGTTCTCAATAAAGAACAGTCTCAAAAATCATCGGCAGAAATATCACCCCACTAGAGTCCGCGAGTGCAAGATCTGCAAGCAGTCCGTGGTGGGGTGGATGGCGCTGCGGGCGCACCTGGCGACCCACGCGGCGGGTGCGGGCTACGCCTGCCCCGACTGCCCCAAGCGGTTCAAATACGCGCACTCGCTGGCTAAACACAGGGACACGCATCTGGAAAAAACTCACAGCTGCGACCAGTGCTCGAAGAAATTCGGGTCTCAGGCGTTACTAAAGATGCATATGAAGTGTCACGAGAGAACCGCCAGGGGAGCCACATTCAGGTGCACTTACTGCGGGAAAGGATTCTTCGAGAGCTACAACTTGCAGGTCCATGAAAGAACACACCGAAATGAGCGTCCCTTCACTTGTGACATCTGTAAAACCAGCTTCGGGACCAACTCCAGTCTCAAACGGCACCTCAAAGTTTCCCACAGCACATCAAAACCCTTCTCCTGCGACATATGCCACCGCAGCTTCGCCTCCTCAACTACTCGAGCGCGCCACATCTCTCGCGTCCACGGAGACTCGTCCGCGTTCCCCCACAAATGTACATTATGTCCGCGACAGTACAGCGCTAATAAGGAGCTGCAGAAACATATAGGGAAAGTGCATAAAGAGGAAAGAGATAGAGGGGACGTGGGGTAA
Protein Sequence: MLHNSGPYGPNDVPINMGMPVNMTQMSNPINLGNNLGNLGKTPQQAPQTTAPAYDMPDYASFSRPPLNMGHPMTPFPNYHPLNFQTSYGHSNPNLPHNTTPRNLEHSTLPMNLNAQSDHGPSLTNYHNFDSKKFDINNAQYRENVNKKVPINIPQIHTKAFQKHLGMNTNNSQFNSAQENPYSHDLSKPSEKSLIDSSRRKSLENTVKLIENILINSTPKDKSKNMESFSHSTSTNHLRNLLQRSVDGNKDEHNINQSSSHRQTVVHDSNTTDLQTTHSNTTEANSDIQNLSINLSSKKPEQLADVNPNMNKDDTKSSKQNDTKTKNLSKIKNTKLSVEKETGTKIQSEIHSEPLRRSLIHNNRRARDEEPREENVEMDSENEELIPAADIKKEIIEEDVVQIKVELVECSDIETSSFLRDTHATTKDSLEADAVVIDSNNVAEAKEAVKKGSNPKAYFECSHCNLLFNHPKRFLIHTKWHTFGLTSEKLHRLEKERELRKTMKREARIVERLNVNEAKEGEEGDRFPCKDCDKVFSIKNSLKNHRQKYHPTRVRECKICKQSVVGWMALRAHLATHAAGAGYACPDCPKRFKYAHSLAKHRDTHLEKTHSCDQCSKKFGSQALLKMHMKCHERTARGATFRCTYCGKGFFESYNLQVHERTHRNERPFTCDICKTSFGTNSSLKRHLKVSHSTSKPFSCDICHRSFASSTTRARHISRVHGDSSAFPHKCTLCPRQYSANKELQKHIGKVHKEERDRGDVG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -