Lstr024246.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421913.1:20974297-20979723[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.1e-06 0.00036 22.1 6.1 1 23 207 229 207 229 0.98 2 11 0.00022 0.019 16.6 1.7 1 23 235 259 235 259 0.98 3 11 0.0034 0.3 12.9 0.7 1 23 268 290 268 290 0.98 4 11 0.0011 0.094 14.5 2.1 1 23 296 318 296 318 0.96 5 11 0.93 81 5.2 1.0 1 23 324 346 324 346 0.95 6 11 0.00041 0.036 15.8 1.2 2 23 353 375 352 375 0.95 7 11 0.048 4.2 9.3 1.7 2 23 381 400 380 400 0.96 8 11 5.9e-06 0.00051 21.6 2.3 1 23 406 428 406 428 0.98 9 11 2.4e-05 0.0021 19.7 1.1 1 23 434 456 434 456 0.98 10 11 1.4e-05 0.0012 20.4 0.6 1 23 462 485 462 485 0.98 11 11 0.027 2.4 10.1 0.4 1 19 491 509 491 512 0.95
Sequence Information
- Coding Sequence
- ATGAGACTTGAGGAAGTTGAGGAACTGAAGATTTTATCCCGTGATGACAAAATACAATATCTTCTCAAAAATGGTCACTTAATTAAAGATAAACTTTTTAATGACGAGGCGTTGAGAAACCAGAATTTAGAGAAGGAAGCGCTGGTCAGAAAACCTAGAGCAAGAAATAATGAACTTATATCCAAAAAGGGAAAACTCAAGAACCGGAATAAGCACATTAAGTACATGGATTCCATTTTGATGAGTGAACTTCTCATTAAGCAAGCTCCTAGAGATAAGAAAAAAGCCAGCGGAGATAATAACAATGATAATGAGCTAAGTGACCAAAACACCAGTCATCAAGATGGAAGCGTACAAAATAATGATGGACCAGTTGAAATAACTGTTCACACCGCAGACACAACCAAAATCCAAAATGAAGCTAACGCAAAGAGGCACAGTACAAGTGAAAATCAAATTGAAATGATTGAAATTAGCATTGATACAAATAACCCTGTTATTCAAGCATCTCAAACAAATGGCAAGAAAGATAAAAGTAAAAATTCAATTCTCGCAGAAAGACTCGATCAAATGAAAACAGTTAAGCTGAGCAATGGAGTATCACTCTCTATGGCCTATTACCAATGTGATTATTGCCAGACAAAGTTCTGCCAGAAATCTTCTTTGCAAAGACACATGTATATGCATCTGGATTTTAAACCGTATACATGCACAGAATGTCCAGATAGGCATTTCCGGCAGCGAAGCAACTGGGAGGCACACATCCGCCGGACGCACCCGAAAGCTTACCGTAATATTAAATATCCCTGTGAAATATGCAAAGAACCATGTAACTCGATTGCAGACTTAAAGCTCCATAAAAAAAAGCATGTGAAGAAACAGCGGCATGTATGTGTTTTTTGTGAGAAAGTCTTTAAAAAGAAATCACTTTTAGTAGATCATGAAAAATATCACATGTCACCGGGGCGGTACAAATGCTCAATGTGCTCTATGAGCTCCGACTCCCGTTTGGTCTACTCTGAACATTTAAAATCCCATACAAAGGTTGAGGATTGTTCTTGCCAATATTGCGGTAAAACCTATTTAAGACCCAGTTCCATTGCTCGTCACATCAGGGTAAGCCACGGTGGTATGAGGATGCAGTGTCCGGTGTGCAATAAGTTGTTAAAAGGTCATCTGACCGAGCACATGAGAACTCATGAGAATGATCGACCTCATGAATGTGATGTGTGCGGGCAGAAATTTACTCAGTCCACGCAGCTGACGGTCCACAAGCGCTCCCATACTGGTGCTAGGCCGTATCCTTGCCGTATCTGTAAGCAGCCTTTCTCGCACTCTAATGCTCTTATGCTGCATATAAGAAGACATACCGGAGAAAAGCCGTTTGAATGTGCCATGTGTCCACAAACATTCTCTCAGCTACCACACATGAAGGCTCACATGCGCAGCATCCATAGTAAAACAGAATTCTATAAATGCGTCAAGTGTAGTACTTTCTTCAAACTCAAGGCTTTGCTGGAAACGCATGCAGAACAATGCGGAGCAACAGAAAGCctcaaaaaatctgaaaacaaaGACAGCACGCTTGTCTCAAAAATGCGGTTTCATCTCGCTCTCCTTTTCACGATGATAGCCTCAAAAGAAAAACTCAACGACCTAGGGTTCAACAAGCGTCTGATAGACGATATACTCGTGGACTCCATCGAGGCCATGGGCTTAGCCCCGTGCAAAGACAAGAGTCTGACGCCTTTCTCCAGGCTGAAGATCAACGCGCTCATGCTGCTGCAAGgTACCGTCCCGAAACCACAGATGGCGCTGTTTgttaaagaaaagaaaagcaCGGAGGAGATACTCGAGCTGCTTACAGATGATCTGAATAAGTAA
- Protein Sequence
- MRLEEVEELKILSRDDKIQYLLKNGHLIKDKLFNDEALRNQNLEKEALVRKPRARNNELISKKGKLKNRNKHIKYMDSILMSELLIKQAPRDKKKASGDNNNDNELSDQNTSHQDGSVQNNDGPVEITVHTADTTKIQNEANAKRHSTSENQIEMIEISIDTNNPVIQASQTNGKKDKSKNSILAERLDQMKTVKLSNGVSLSMAYYQCDYCQTKFCQKSSLQRHMYMHLDFKPYTCTECPDRHFRQRSNWEAHIRRTHPKAYRNIKYPCEICKEPCNSIADLKLHKKKHVKKQRHVCVFCEKVFKKKSLLVDHEKYHMSPGRYKCSMCSMSSDSRLVYSEHLKSHTKVEDCSCQYCGKTYLRPSSIARHIRVSHGGMRMQCPVCNKLLKGHLTEHMRTHENDRPHECDVCGQKFTQSTQLTVHKRSHTGARPYPCRICKQPFSHSNALMLHIRRHTGEKPFECAMCPQTFSQLPHMKAHMRSIHSKTEFYKCVKCSTFFKLKALLETHAEQCGATESLKKSENKDSTLVSKMRFHLALLFTMIASKEKLNDLGFNKRLIDDILVDSIEAMGLAPCKDKSLTPFSRLKINALMLLQGTVPKPQMALFVKEKKSTEEILELLTDDLNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -