Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421928.1:819405-824463[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 9.2e-06 0.00081 21.0 1.8 2 23 142 163 141 163 0.97

2 8 0.00021 0.019 16.7 7.0 1 23 169 191 169 191 0.98

3 8 4.5e-07 4e-05 25.1 0.9 1 23 197 219 197 219 0.99

4 8 8e-05 0.0071 18.0 0.8 1 23 225 247 225 247 0.98

5 8 3.4e-05 0.003 19.2 4.8 1 23 253 275 253 275 0.98

6 8 3.4e-05 0.003 19.2 1.4 1 23 282 304 282 304 0.99

7 8 0.00029 0.025 16.3 0.3 3 23 312 332 310 332 0.97

8 8 7.1e-05 0.0062 18.2 2.0 1 23 338 361 338 361 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	9.2e-06	0.00081	21.0	1.8	2	23	142	163	141	163	0.97
2	8	0.00021	0.019	16.7	7.0	1	23	169	191	169	191	0.98
3	8	4.5e-07	4e-05	25.1	0.9	1	23	197	219	197	219	0.99
4	8	8e-05	0.0071	18.0	0.8	1	23	225	247	225	247	0.98
5	8	3.4e-05	0.003	19.2	4.8	1	23	253	275	253	275	0.98
6	8	3.4e-05	0.003	19.2	1.4	1	23	282	304	282	304	0.99
7	8	0.00029	0.025	16.3	0.3	3	23	312	332	310	332	0.97
8	8	7.1e-05	0.0062	18.2	2.0	1	23	338	361	338	361	0.97

Sequence Information

Coding Sequence: ATGGAGGCGGTTTCGGTTAAAGTGGAGCCTACCTGGGAAGTAACGCTGGAGCCTTATGAGGGCTTGCCAAACCCCCATGGACCAGTTATAGAGGCCGTGCAATCTCTAGCTGAAGCACCGGTGAAAGAAGAGGTTGAAATCAAGTATGAGCCTCCGGAGCCGGAGCCGGAGCCGGAGAGTCTGGAGGACGCCAGCGGAAACAAGCCTCATAATAAGCTGTTAAAAGAACAAGTGCACACACTGCACACCGAGGTGGAAATCAAGTTTGAGAACGAGACAGACCACACGGACGAGCCCGTAAGCGCCAGCGAGAGCGATCGATCCACGCACGAGCCGTCTGAAGAACTGCCAGAGAAAGAGCTGTCTGGGCGTGCAACTCGAACAGGGCGGCGCGCGAAGCGACAACTAACAAGCGAAGAGCTCACGTGTCACATATGCTCAAGACCCTTCAAACGAGCTAATAAACTAAAGCTACACATGATGATCCACTCTGGAGAGAAGCCGTTCAAATGTACAATGTGTGAGAAGCGATTCCGACAGATCACCCATTTAAAGACGCACCAACACGTTCACACGGGGCACAAACCTTACAAATGCAATACATGTAATCAATCGTTTTCAGATTCCGGCGGTCTCAAACGCCATGAAAGAATCCACGCCGGTGACATACCTTTCTCGTGCACTGTATGCAACAAAGGGTTCACTGAATCATTCGCGCTTAAAATGCATTCAAGAATACATACGGGTGAGAAACCTTTCAAGTGCGAAATATGTCACAGGCTCTTCTCCAGGCCCGACTGCTTGAAGAGGCATGAACTAACACACAAAGATATAAGAAAGGGATTTACATGTGACATATGTAAAAAAGATATCAGCGATCCAAGGAACATGAAGAGACACAAGCGAACACATACAGGTGAGAAACCTTTTGGGTGTGAGCAGTGTAATAAAAGGTTTTCTGGAATAGACGACCTGAAGCGGCACGGGATGGTTCACAGTGGTGAGAAACCATACTCGTGCGATGTCTGTAAGAAAAAATTCTCGCGATTGAATTATGTGAAAAAGCATGTGCAGAAAGCACACAACGCCAGAAAACATGATGAAATTCATAAGGAGAAATCAAACACCATTCTCTCGGAAACGGACCACTGTACGGACGGACGACGTAGTGTCTGA
Protein Sequence: MEAVSVKVEPTWEVTLEPYEGLPNPHGPVIEAVQSLAEAPVKEEVEIKYEPPEPEPEPESLEDASGNKPHNKLLKEQVHTLHTEVEIKFENETDHTDEPVSASESDRSTHEPSEELPEKELSGRATRTGRRAKRQLTSEELTCHICSRPFKRANKLKLHMMIHSGEKPFKCTMCEKRFRQITHLKTHQHVHTGHKPYKCNTCNQSFSDSGGLKRHERIHAGDIPFSCTVCNKGFTESFALKMHSRIHTGEKPFKCEICHRLFSRPDCLKRHELTHKDIRKGFTCDICKKDISDPRNMKRHKRTHTGEKPFGCEQCNKRFSGIDDLKRHGMVHSGEKPYSCDVCKKKFSRLNYVKKHVQKAHNARKHDEIHKEKSNTILSETDHCTDGRRSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -