Lstr040261.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421927.1:8299781-8321464[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.012 1 11.2 0.7 1 23 318 340 318 340 0.96 2 12 1.3 1.1e+02 4.8 1.9 1 23 347 369 347 369 0.95 3 12 3.1 2.8e+02 3.6 4.9 1 23 373 395 373 395 0.96 4 12 0.00014 0.012 17.3 3.4 1 23 400 423 400 423 0.97 5 12 0.0043 0.38 12.6 0.1 2 23 429 451 428 451 0.94 6 12 0.078 6.8 8.6 0.0 1 22 462 483 462 487 0.93 7 12 0.056 4.9 9.1 0.2 3 23 493 514 492 514 0.94 8 12 0.00058 0.051 15.3 2.6 1 23 519 542 519 542 0.98 9 12 0.00095 0.084 14.6 0.3 1 23 2410 2432 2410 2432 0.97 10 12 0.00092 0.081 14.7 1.6 1 23 2440 2462 2440 2462 0.98 11 12 4.1e-05 0.0036 18.9 1.0 1 23 2468 2491 2468 2491 0.96 12 12 0.0011 0.099 14.4 0.2 2 23 2499 2521 2498 2521 0.93
Sequence Information
- Coding Sequence
- ATGGATGGAATACAAAATGATTCAAACGAGACATCGCTGCTCGCGTGCCGAGCATGTCTGGAAACAGATTGTAAATTGTACAATATTCATGAATATCAGCTTTCTGCGGCCTTTTTTCGCATAACAGGAACTCGTCAGTTGCAGCACCAGAACGATGGGCTCCCACAGCACCTCTGCAGCGTGTGCTGCGCGCAGCTCGCACGCGCGGAGGCCTTCCGCGAGAAGGTGCTCCGCGCGCACTACTGCATGCGCGCCAAGCTCGCTGACAAACCGTTGGACACAGATACCATCCGCTCCATAGATCGCGCTCACTTCAAACTTCATCACAATCTAACATTGACAACACAACAAGTCGTCGAATgtacaaatataaaaacacCCGACGATATCAAAAACGAACCAAGTCTGGACGAAGTCGAACAAGACACTAAAGATAATATTGTAGAGAAAACCGATCTGAAAGAAGAAGACAAACCGCTTGAAATTGAAACTGATAACGATAATGATAACGGAATCGAAGATATATTTGTTATAACAGACGTTAAAGATattaaaaagagaaaaagaAAAGTTAACACAAGAAAGAAACTGAAATCAGAGCATGAAAGTGATGATGGATTCGATGATGAAGATGATATATGTTTAAAATCTGTTAAAAAAACACCAGTGAAAAGGGTGGAcggtaaaaagaaaaaagttgtTAAGAAAGTGTTAAAAAGTAATGAGAAAGTTAAAGATGATGTGAAAGCCAAAAGTAAAGTTAAAAAGGAAAGGAAACCGAAGGAGGATAGTAAAAGAAAGTTCCGGAATCCAGCGAATGATTATATGCCTGTGTTTGATTTTGCTACGTTTGAGAATGCATTCGAAGTGCGCGTGGTTACTCTGAGCAAGGAAGACCAACTTGAAGAGATCGCTACCCGCAAAGAGTCCCCGAACTACCTCGAGTCCCCGTACCAGTGCCACGACTGCGGGAAAGGGTTCCTGGCCGAGGAGGCCTACAACAACCATCAGCTACGGCACAATCCTAACGCAGGCCAATACGCCTGCGAAATCTGCAACGTCCGCTTCACGATGCAGTGTCGCCGCCAGGAGCACCAAGACATGCATCGGCTCAAGTTCTTTTGCAAGAACTGCAGCTTTGTCTCTAGAAATAGGCATCAAGCGAGGAGGCATTATGACATGCACGCAGGAAAAACATTCCAGTGTAAACACTGCGGGAAGAACTTCAATAAGAGTTCGACGTACCTGTCGCACGTGCGTCTCGCGCATCCAGACATGCACGTGTCGTGCGAGCTGTGCGGCGAGACCTTCGTGGGCCAGGCCGGCCTCAAGCAGCACAGGGCCAAGATGCACGCCAGGGCCGAGAATGTCAAACCACAAAAGTTCGAGTGTAGTACGTGTTCGGCGATCTTCATCAGTGTGGACGCGCTGAACAGACACACGGAGACGGCGGGCGAGCACAGCGACCTGCGGCCGTGCGAGCAGTGCGGCGAGAACTGTGCGAGCGAGGACGCGCTACAAGAACATGTGAAAGAGAGACATCCGAAAGAAACGTATAGGTGTGAAGAGtgcAACATGTCCTTCACCCGGGCCTCCGCGTACGATCTCCACCACCGCCGCAAACACCTCGGCCAGCGGTtcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgtgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcggacgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgtgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcggacgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcggacgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcggacgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcggacgagtgctcacggtgagtctccaccgcactagtgcgagcaggcaagcacgaggccagcggttcagcgccgccggccgccaccagccgcgccgcacgcccgggcacttcgtgtgcgagcagtgcgggcgagtgctcacgTCTCGCCAGGGCCTTCGCTACCACCTTCGGGATCATAAAGGATTGAACCTGAAGCTTTTCACGTGCCCCGAGTGCAACAAAACCTTCGCCGCTAAACACATGAGAGACTGGCACATGCGCTCCCACACGGGCGAGAAACCTTACCAGTGTCCCGAGTGCCCGCTCGCGTTCAGCCTCAACAGCAACTTCAAGCGGCACCACAAAGCGGTGCACCTCGGGCAGCGCAAGAGCATCCCGTGCAACATCTGCGGCCGCGTGTTCACCACCACGTCGTGCGTGCGCGTGCACGTCAACGCGGTGCACCGCGGCATGCCGTGGCCCAAGCGGAACCGCGGCCGCGGCAAGCCGGAGCCCAAGTCGCCCGCCGATAATAAACTAATCTAG
- Protein Sequence
- MDGIQNDSNETSLLACRACLETDCKLYNIHEYQLSAAFFRITGTRQLQHQNDGLPQHLCSVCCAQLARAEAFREKVLRAHYCMRAKLADKPLDTDTIRSIDRAHFKLHHNLTLTTQQVVECTNIKTPDDIKNEPSLDEVEQDTKDNIVEKTDLKEEDKPLEIETDNDNDNGIEDIFVITDVKDIKKRKRKVNTRKKLKSEHESDDGFDDEDDICLKSVKKTPVKRVDGKKKKVVKKVLKSNEKVKDDVKAKSKVKKERKPKEDSKRKFRNPANDYMPVFDFATFENAFEVRVVTLSKEDQLEEIATRKESPNYLESPYQCHDCGKGFLAEEAYNNHQLRHNPNAGQYACEICNVRFTMQCRRQEHQDMHRLKFFCKNCSFVSRNRHQARRHYDMHAGKTFQCKHCGKNFNKSSTYLSHVRLAHPDMHVSCELCGETFVGQAGLKQHRAKMHARAENVKPQKFECSTCSAIFISVDALNRHTETAGEHSDLRPCEQCGENCASEDALQEHVKERHPKETYRCEECNMSFTRASAYDLHHRRKHLGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPCRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPCRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTVSLHRTSASRQARGQRFSAAGRHQPRRTPGHFVCEQCGRVLTSRQGLRYHLRDHKGLNLKLFTCPECNKTFAAKHMRDWHMRSHTGEKPYQCPECPLAFSLNSNFKRHHKAVHLGQRKSIPCNICGRVFTTTSCVRVHVNAVHRGMPWPKRNRGRGKPEPKSPADNKLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -