Lstr031959.2
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- su(Hw)
- Assembly
- GCA_949128165.1
- Location
- OX421919.1:8871851-8879228[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0062 0.54 12.1 0.1 2 21 26 45 26 46 0.95 2 13 0.00086 0.075 14.8 2.9 1 23 65 88 65 88 0.96 3 13 0.048 4.2 9.3 0.5 3 23 97 118 97 118 0.95 4 13 0.00025 0.022 16.5 1.0 1 20 123 142 123 144 0.95 5 13 1.6e-06 0.00014 23.4 0.1 1 23 155 178 155 178 0.97 6 13 1.1 98 5.0 7.0 1 23 184 207 184 207 0.96 7 13 0.0012 0.1 14.4 0.2 1 23 214 236 214 236 0.98 8 13 0.11 9.4 8.2 0.0 1 23 241 263 241 263 0.96 9 13 1.4e-06 0.00012 23.6 0.5 1 23 269 291 269 291 0.98 10 13 2.8e-06 0.00025 22.6 0.2 3 23 296 316 295 316 0.97 11 13 0.044 3.9 9.4 0.2 3 23 324 349 322 349 0.82 12 13 0.0016 0.14 13.9 2.9 1 23 355 377 355 377 0.99 13 13 5.6 4.9e+02 2.8 0.7 3 23 385 408 384 408 0.82
Sequence Information
- Coding Sequence
- ATGCCACCTGCAGGTAAATTAGGTAAAAGATTGGGAAGACCTAGGGGATCCAAGCAAGACGTTAATGTAAAAAATGAATGCAATTACTGTTCCGCTGTATTGAGGAACAAGAGTCAAATGGTGAAACATTTACGTATATGTAAACAGAAAAAGTTGGCTAAGCTTAAGGATCTTGATCCCAAAAAGGCGGTGTACAGTTGCAAACAATGTAACAAAAAGTTCAGATTTGAGAACAGTTATGCTAAACATTTAACAATGGAGCACTCCATGCTGCGGAGTGCAGTGGGATGCAAGCAGTGTCCAGTCCGCTGTCCCAACAACCGAGCCCTTAAGGAGCACATTGCAAATGTGCATGAGCGAGAGATATTTGAGTGTGAGCATTGCAAGAAGCAGTTTGTGAGGCGTGCTCATGTGCTGCGCCACATTGCCCAAAAAGGCTGTGATGGAACTGGAGTTAAAATGTATCCCTGTGAAATTTGTAGTGCCTCATTCACCCGCAAGGACAACTTGATAGTGCACCTCCGCTTACAACACATCAACAAGAACAGCTTCAATTGCAAACACTGTCTCTACCACACCAAAAACTTCTCCAAACTGATCATCCACACCCAAAAGAACCACTTAGAACCCAAGAACTGTTATGAGTGTGACCACTGCGCCAAAGTGACAAGCTCAAGGGCTGCCATGGCCAAGCATTTAGAGATCCATGGAGAAAAGAAATATGAATGTGATGTGTGTGGCTACGCAACGTACACGATAGAGGTGATCCGGCGCCACGTGCTGATCCACGTGGAGGACAAGCCGTACAAGTGCGCGATCTGCGGCCAGTCGTACATCCAGCGCTCGCAGCTGCAGCGCCACCTGGTCAAGCATACCGGCAACATGTGCCCCAAGTGCGGGGAGACCTTCAACTCTAAAGCCAGCTTAATTATCCACCAGCGCGAACACATGGGACTGGACAAACTGTACTGCCCGTACGAAGGATGTTCCTATTCCAAGAAGGAGTTCAGCAGCGAAGCAAGTCTCACCAATCATGTGAAGACCCATTTAGATGACAAACCGTACCAATGCGCCGTGTGCAAGAAGCGCTTCCACAGCGAGATCAACCAGCGGCGgcacgtgatgacgcaccagcTGGACCGGCCGCGGCGCTGCATGTACTGCGTGAACGCGCGCGCCTACGTGCGCGGCGAGCAGCTCGTCAAGCATGTGCGCAAGTGCCATCCCGACCTGTTCCGCGCGCACCTGCAGCACGTGCGCAGGGTGCTGGGCACAAGCAACAAGATCGACCGCGTGAAGAAGTCTGAACTGGACTCGATCCTGAACGTGCTGGACGCGGAGTCGGAGCGCATCCTGCAGGGCTACGGCGAGGGCGTGCTGTACGGCGGCGTGCAGGACGTGGAGCCCGACGAGCTCGACGTGCCGCTCAAGaCTGAAAAGACTGAGAGCCCGCTGATGTCGGAGGAGGAACTGGCCGAGAGCCTGAAGAAGTTGCTGACGCAGCTCATCGACGTGGAGAAGCTGGAATGCTTCGGCTGGCCCGACGAGAGTGTTGACGTGGTCCTGGAAAAAGTGATAGAGCAAtgcggcgcgcgcgctgcagaCCGGCAGCGCTGGACGCGCGTGCAGCGCCTGCGCGAGAACACCAAGCAACTGTTCCTCTACGTCATCGAGGATGCCAACATCGCGCGCATGCTTGACACGCACACCATCGATCAGATCGTCAAGCACATCCTCACGCAGGTCGCAGAGACCGAGGGCGCGGAAATATAG
- Protein Sequence
- MPPAGKLGKRLGRPRGSKQDVNVKNECNYCSAVLRNKSQMVKHLRICKQKKLAKLKDLDPKKAVYSCKQCNKKFRFENSYAKHLTMEHSMLRSAVGCKQCPVRCPNNRALKEHIANVHEREIFECEHCKKQFVRRAHVLRHIAQKGCDGTGVKMYPCEICSASFTRKDNLIVHLRLQHINKNSFNCKHCLYHTKNFSKLIIHTQKNHLEPKNCYECDHCAKVTSSRAAMAKHLEIHGEKKYECDVCGYATYTIEVIRRHVLIHVEDKPYKCAICGQSYIQRSQLQRHLVKHTGNMCPKCGETFNSKASLIIHQREHMGLDKLYCPYEGCSYSKKEFSSEASLTNHVKTHLDDKPYQCAVCKKRFHSEINQRRHVMTHQLDRPRRCMYCVNARAYVRGEQLVKHVRKCHPDLFRAHLQHVRRVLGTSNKIDRVKKSELDSILNVLDAESERILQGYGEGVLYGGVQDVEPDELDVPLKTEKTESPLMSEEELAESLKKLLTQLIDVEKLECFGWPDESVDVVLEKVIEQCGARAADRQRWTRVQRLRENTKQLFLYVIEDANIARMLDTHTIDQIVKHILTQVAETEGAEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01134065;
- 90% Identity
- -
- 80% Identity
- -