Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421913.1:1854439-1859326[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.7e-06 0.00041 21.9 1.7 1 23 205 227 205 227 0.98

2 9 4.5e-08 4e-06 28.3 1.6 3 23 235 255 233 255 0.98

3 9 0.00015 0.013 17.1 0.3 1 23 261 283 261 283 0.98

4 9 1.6e-05 0.0014 20.2 1.7 1 23 289 311 289 311 0.99

5 9 3.4e-05 0.003 19.2 1.7 2 23 456 477 455 477 0.96

6 9 4.4e-09 3.8e-07 31.4 1.6 1 23 483 505 483 505 0.98

7 9 0.0037 0.32 12.8 0.6 3 23 513 533 511 533 0.97

8 9 9.5e-05 0.0083 17.8 1.5 1 23 539 561 539 561 0.99

9 9 0.092 8 8.4 0.8 1 23 567 591 567 591 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.7e-06	0.00041	21.9	1.7	1	23	205	227	205	227	0.98
2	9	4.5e-08	4e-06	28.3	1.6	3	23	235	255	233	255	0.98
3	9	0.00015	0.013	17.1	0.3	1	23	261	283	261	283	0.98
4	9	1.6e-05	0.0014	20.2	1.7	1	23	289	311	289	311	0.99
5	9	3.4e-05	0.003	19.2	1.7	2	23	456	477	455	477	0.96
6	9	4.4e-09	3.8e-07	31.4	1.6	1	23	483	505	483	505	0.98
7	9	0.0037	0.32	12.8	0.6	3	23	513	533	511	533	0.97
8	9	9.5e-05	0.0083	17.8	1.5	1	23	539	561	539	561	0.99
9	9	0.092	8	8.4	0.8	1	23	567	591	567	591	0.94

Sequence Information

Coding Sequence: ATGGTTAAACATGACACGACCGCACCATACGTCCTGTACAAAGATGGCGTGGAGCGGGCTCCACCAGGCACGCAGTGGGGAGGAGGGGTGCTCGACGGCGGCTACCAGCCCATGCAGCACCAGAGCCCGGGCGGGCCGTCGCCGCAGCCCGAGCCTCAGCTCGCCTCGCCGGCGCCGTCCCCGTACCCCGCACCGCCACCCCCCGACCAATCCGCAGAAGACGCCGCCCAACAACTCGCACAACAACAAGCTCAACAGCAAGTCCAACAACAGCAGCAAACGTCGCCTGAGCACATGCAGGTCGAACAACAGCTACAGAACCAATCGCAGACGCAACAAACTCAAGACCACCTCGACCGCGGGCCCTGCTTCATACCGCAGCCAGACTTAAATCAACAGTACACGCCGTACTTCAAAGAAACCAGACCCGCCAGCCATATGTTAGGCGGCGGCGGCTTCCCGCTACACTATTTAAAACAGAACGGAGGCGTCCTCTCGCTAGAGGGCCCGCTGGACCAGTACGGAGCTCCAGAGCTCCGCCACTTACCTGATATAGTGCAACCGGAACAGCCGAAGCCGCGCAAACACAACCCGAACTCGGAACTGCGGCTGTTTAAATGTCTGACCTGCGGCAAAGACTTCAAGCAGAAGTCGACGCTTCTGCAGCACGAACGTATCCACACCGACTCGCGGCCGTACGGCTGCCCGGAGTGCGGCAAGCGCTTCCGCCAGCAGTCGCACCTGACCCAGCACCTCCGCATCCACGCCAACGAGAAGCCGTACGCGTGCGTGTACTGCCCACGCTCGTTCCGGCAGCGCGCCATCCTCAACCAGCACCTCCGCATCCATTCCGGTGAGAAGCCATATACGTGCGGGGAATGTGGCAAACATTTCCGCCAGAAGGCCATCCTGAACCAGCACGTCCGCACACACCAAGGCGAGCGCTATTCACACATATATGCCCCTCCCGAGTCCCCGCGCGCGGCGCCAGCAgcggcgcgcgccgcccgcgccgctgcTGGCGCCGCGCGCGCTGTCCGCCGCCCCCAGCACGTTCGACTCGATGTCTCGCCGCATCTGATCTTCAAGAACGGGACCACGCCGACGTTGTGGCCGCAGGACGTGCCGTTCCCCCCGGACGAGGGAAAAGAGGAGGTGATGTCGACCTTTGGCGATGCGGACGGCCAGAACGGAGAGCAACGCGCGTCGTGCTTCTCACCGGGCGACACGGCGCAGTACCCGGCGTACTTCAAAGATACGAAAGGGCTCAACCATACGGTATTCGGCTCGGGGCTGTCATTACAATATCTGAAAGGAGGCAAGTTACCAGACGTGCTAGGAGGTCGCGCGATGCCCTTGTTCGTCCGCTGCCCGATCTGCCAAAAAGAGTTCAAGCAGAAGTCGACGCTGCTTCAGCACGGCTGCATACACATAGAGTCCCGGCCGTACCCTTGCCCCGAGTGCGGGAAACGATTCCGGCAACAGTCGCATCTCACGCAGCATCTCCGCATACACACGAACGAGAAACCGTACGGATGCGTGTACTGCCCGCGCTTCTTCCGGCAGCGGACCATCCTCAACCAACATCTCCGTATTCACACCGGCGAAAAGCCGTACAAATGCACGCAGTGCGGCAAGGACTTCCGACAGAAGGCCATCCTGGACCAGCACACGCGCACTCACCAGGGAGACCGGCCATTCTGCTGCCCCATGCCCAACTGCCGGCGGAGATTCGCCACCGAGCCGGAGGTGAAGAAGCACGTGGACAACCACATGAACCCGCACGCGGCCAAGGCGCGGCGCGCGGAGGTGAACAAGACGCCGCGGCCGCTGccgccggcggcggcggtggtgaAGCCGGAGCTGTACTTCCCGCAGTGCTACGCGCCGCCGTTCCAGCAGTTCCCGCCGTCGGCGCAGGAGTTCAAGCCGGCCGTGGGCCCGGGCGCGCCGCTGGCGTGCCTGCCGGCGCAGTGA
Protein Sequence: MVKHDTTAPYVLYKDGVERAPPGTQWGGGVLDGGYQPMQHQSPGGPSPQPEPQLASPAPSPYPAPPPPDQSAEDAAQQLAQQQAQQQVQQQQQTSPEHMQVEQQLQNQSQTQQTQDHLDRGPCFIPQPDLNQQYTPYFKETRPASHMLGGGGFPLHYLKQNGGVLSLEGPLDQYGAPELRHLPDIVQPEQPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYTCGECGKHFRQKAILNQHVRTHQGERYSHIYAPPESPRAAPAAARAARAAAGAARAVRRPQHVRLDVSPHLIFKNGTTPTLWPQDVPFPPDEGKEEVMSTFGDADGQNGEQRASCFSPGDTAQYPAYFKDTKGLNHTVFGSGLSLQYLKGGKLPDVLGGRAMPLFVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHVDNHMNPHAAKARRAEVNKTPRPLPPAAAVVKPELYFPQCYAPPFQQFPPSAQEFKPAVGPGAPLACLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00428362;
90% Identity: iTF_00411725; iTF_00411721; iTF_00410577; iTF_01134045;
80% Identity: -