Basic Information

Insect: Lathronympha strigana
Gene Symbol: ham
Assembly: GCA_949128165.1
Location: OX421916.1:12757388-12772457[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.047 4.1 9.3 0.1 2 23 57 79 57 79 0.94

2 9 0.0011 0.096 14.5 1.0 1 23 86 109 86 109 0.93

3 9 2.3e-08 2e-06 29.2 0.1 1 23 115 138 115 138 0.96

4 9 2e-06 0.00018 23.1 1.7 1 23 144 166 144 166 0.95

5 9 5.9e-05 0.0052 18.4 7.1 1 23 172 194 172 194 0.99

6 9 0.0018 0.16 13.8 0.4 2 21 202 221 201 222 0.94

7 9 1.7e-08 1.5e-06 29.6 0.7 1 23 625 647 625 647 0.98

8 9 6.1e-07 5.4e-05 24.7 1.7 1 23 653 676 653 676 0.97

9 9 6.7e-06 0.00059 21.4 3.3 1 23 682 704 682 704 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.047	4.1	9.3	0.1	2	23	57	79	57	79	0.94
2	9	0.0011	0.096	14.5	1.0	1	23	86	109	86	109	0.93
3	9	2.3e-08	2e-06	29.2	0.1	1	23	115	138	115	138	0.96
4	9	2e-06	0.00018	23.1	1.7	1	23	144	166	144	166	0.95
5	9	5.9e-05	0.0052	18.4	7.1	1	23	172	194	172	194	0.99
6	9	0.0018	0.16	13.8	0.4	2	21	202	221	201	222	0.94
7	9	1.7e-08	1.5e-06	29.6	0.7	1	23	625	647	625	647	0.98
8	9	6.1e-07	5.4e-05	24.7	1.7	1	23	653	676	653	676	0.97
9	9	6.7e-06	0.00059	21.4	3.3	1	23	682	704	682	704	0.98

Sequence Information

Coding Sequence: ATGAAACTTGATGATCTCCATATACCTATGTACCGTTGCTTGCCCGAGAAATTAAACAAATCCATCAAATCAAAAGTGACATATGGATGTCGGCAACCTTCCAGTATCAACCCGCCAGGCGTGTCTTTGCCCCTCAACGAAGACGAGGACAGGGAGGACACGGAACCGCGTTGCTCCTTCTGCGACGCTCCATTCCCTAATATTGACGCTCTCGACCGTCACCTGATCCAGTCGCACGCGCAGCCTGCCGCAGCCTTCCACTGCGAGCTCTGCAACCGCTCCTACAGCTCCCGGCCGCTGCTGCTGCGTCACCGCGCGCTAGCCCACACCGACATCAGGAAATACCCGTGCGAGAATTGCCCCAAGGTATTTACCGATCCTTCCAACCTCCAGCGTCACATCCGCGCGCAGCACGTCGGCGCGCGCAGCCACGCCTGCCCCGAGTGCGGGAAGACCTTCGCCACCTCCTCCGGCCTCAAACAGCACACGCACATACACTCCAGCGTCAAGCCTTTCCAGTGCAAGGTGTGCTTTAAGTCGTACACGCAGTTCTCCAACCTGTGCAGACACAAGCGGATGCACGTCGCCTGCAGAGCCCTGGTCGAGTGCGGAAAATGTGGCAACTCCTTCAACTCTTATGCTTCTCTTACCAAACATAAAAGATTCTGTGACACTGCTAGTGCGGCTAACGTTGGAATGAGGGGACAAATGCCGCAAGGGCTGCCTCAAATGCCGTCCCTACCAAATATGGGGATGAATACGCCTGGAAATCCGAATCCGTTCCCCATGTATAGGGGGCCGACTTTGCCGCTTCCATATAACACCTTTGCCCAGTACCCAGGGCTATTCTCTGCGGCTGCAGCAGCAGCTTGCCCCCCAGAGTTCTTAAACCCACTGCTTTTCAATGTCCAAGGTGCAAGACTTGCCATGGAGCACGACTTTGCTTTAACAAACGCTAGTTTATTATCAAAGCATCAGGAAGGGCGCATGTCTGTAAAAAGCGTGGACAGTTCAAATTCACTTGACGATATCATGAAGAAGAATAAAGATTTGGATTATGAATCCATTAAGCGCGAAAGCGATGCAGGTGATAGAACTACGCCTAATAAAACGCATGGGCTAACTGTTAAACAATCACCTCCGTCCGTTGACGAAGCCCCAACTCACCGACGTCCATCACCTGTGTTAAGCATGTCAACACCTATGAATCCATTCAACTTTGCAAGAGATGATATGAAACATAGAAAATCACCATTCAATTTTTCACTGAAATTCAATAACAACACTATTCAAGGAAATAAGTCCCATTCCCCATTTCCAACAGATTTGTCCAAAAATGATACGAATGATGATGAAAAGAATTCAGAGTACTCTGATTTTGAAGTCGAAGTAAAGAAGGACGACGGCGACCAGCCCCTGGATTTGTCAGTTTCCCGGAAGCAAAGCGATAAAGGCTCCGAAGGCGACATCGACGATCGCTCCTTTCGTAACTCATCTATCAAGTCATATTCCCCTCCCGAAAGTCCAATGGAGCGAGAAAGTAAAACTCCCGAAAATGACACTGCGGATATCGATGTTGAGGGAGTAGAACCCAAACGAGAAGTTACGCCCCCGCAACTGGTATCGCCGCCACTGGCTTTCCCGATGCCCGTGCATCCTCAGCACAACAGCAGTCTCATCGACGCCATGTATCGCCCTCGATTTCCGTCCTTCCATTCAGCATCCGACTCGATTCTGAACTCTTCACCATACGTTCCGACcccatttaattttttatcccCACTCCTTGGTACGGATGGCCCCGATAGGCAACCGAGCGCATATGCAAAATTTCGCGAACTGAGCGCCGGGTCGGGGAAACTTCGCGATCGCTACGCCTGCAAGTTTTGCGGGAAGGTATTTCCTCGCAGCGCCAACCTGACGCGTCACCTTCGCACTCACACTGGGGAACAGCCCTACAAATGTAAATACTGCGAGCGTTCATTCTCGATCTCTTCCAATCTACAGCGACATGTGAGGAACATCCACAACAAAGAGAGGCCGTTTAGATGTCCATTGTGCGATAGGTGTTTCGGGCAGCAGACGAACCTGGACCGGCACCTGAAGAAACACGAAGCCGAGGGCGGGGATTCCCCAAGCTCTGCAGATACGGAGCGCGAGGACGCATACTTTGACGACATCCGGTCGTTTATGGGTAAGGTGACCTGTTCACCGGGCGCTCGCTCGCCGCCAGCTTCGTCCCCTCACACAGCGCACGCGCCGCACCGGCCCTCCGTGCTCGCCATCTCCACATAG
Protein Sequence: MKLDDLHIPMYRCLPEKLNKSIKSKVTYGCRQPSSINPPGVSLPLNEDEDREDTEPRCSFCDAPFPNIDALDRHLIQSHAQPAAAFHCELCNRSYSSRPLLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKSYTQFSNLCRHKRMHVACRALVECGKCGNSFNSYASLTKHKRFCDTASAANVGMRGQMPQGLPQMPSLPNMGMNTPGNPNPFPMYRGPTLPLPYNTFAQYPGLFSAAAAAACPPEFLNPLLFNVQGARLAMEHDFALTNASLLSKHQEGRMSVKSVDSSNSLDDIMKKNKDLDYESIKRESDAGDRTTPNKTHGLTVKQSPPSVDEAPTHRRPSPVLSMSTPMNPFNFARDDMKHRKSPFNFSLKFNNNTIQGNKSHSPFPTDLSKNDTNDDEKNSEYSDFEVEVKKDDGDQPLDLSVSRKQSDKGSEGDIDDRSFRNSSIKSYSPPESPMERESKTPENDTADIDVEGVEPKREVTPPQLVSPPLAFPMPVHPQHNSSLIDAMYRPRFPSFHSASDSILNSSPYVPTPFNFLSPLLGTDGPDRQPSAYAKFRELSAGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGARSPPASSPHTAHAPHRPSVLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00680859;
90% Identity: iTF_00657509;
80% Identity: -