Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421926.1:6806125-6813348[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.14 13 7.8 1.0 1 23 111 134 111 134 0.92

2 12 6.9e-05 0.006 18.2 2.9 1 23 233 255 233 255 0.98

3 12 0.00034 0.03 16.1 0.9 1 23 265 287 265 287 0.98

4 12 0.00073 0.064 15.0 3.7 1 23 295 318 295 318 0.97

5 12 0.00027 0.024 16.4 0.4 1 23 324 346 324 346 0.96

6 12 1.2e-05 0.0011 20.6 3.8 1 23 352 374 352 374 0.98

7 12 3.9e-07 3.4e-05 25.3 1.1 1 23 380 402 380 402 0.96

8 12 5.9e-05 0.0052 18.4 0.4 1 23 408 430 408 430 0.97

9 12 7.8e-06 0.00069 21.2 0.8 1 23 436 458 436 458 0.98

10 12 0.00029 0.025 16.3 1.6 1 23 464 486 464 486 0.97

11 12 0.00019 0.016 16.9 3.5 1 21 492 512 492 514 0.95

12 12 2.8e-05 0.0024 19.5 0.5 1 23 520 542 520 542 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.14	13	7.8	1.0	1	23	111	134	111	134	0.92
2	12	6.9e-05	0.006	18.2	2.9	1	23	233	255	233	255	0.98
3	12	0.00034	0.03	16.1	0.9	1	23	265	287	265	287	0.98
4	12	0.00073	0.064	15.0	3.7	1	23	295	318	295	318	0.97
5	12	0.00027	0.024	16.4	0.4	1	23	324	346	324	346	0.96
6	12	1.2e-05	0.0011	20.6	3.8	1	23	352	374	352	374	0.98
7	12	3.9e-07	3.4e-05	25.3	1.1	1	23	380	402	380	402	0.96
8	12	5.9e-05	0.0052	18.4	0.4	1	23	408	430	408	430	0.97
9	12	7.8e-06	0.00069	21.2	0.8	1	23	436	458	436	458	0.98
10	12	0.00029	0.025	16.3	1.6	1	23	464	486	464	486	0.97
11	12	0.00019	0.016	16.9	3.5	1	21	492	512	492	514	0.95
12	12	2.8e-05	0.0024	19.5	0.5	1	23	520	542	520	542	0.98

Sequence Information

Coding Sequence: ATGGAAAGTAATAAATTAGATAGCACAAATATATGCAGAACTTGCATGTGCGAAGGAACAAATATGAGATCGGTGTTTCTAAAATTACAGGATGAGAAAAGTGCCACTGATTTACTTGAATTTATTGCAAATATTAGCATCAACTCTGACGATAACCTTCCTAAACAAGTTTGCGATAAATGCGAAAGGTTTTTGTGTAAAGCTGCTTATTTTAAAAGTCGATGTTTGGATGTTGAATCGAAGTTAAGGAAACTGTTTACTGACGAATCTGTTGCAAGTTTATCTGTAATAAAGCAGGAAAATAAAGCATCAGAAAGCATAGAAGAGCCGTATCAGTGTTCTGTTTGTTATAGCAAATATTCTGAGACAGCTGAattagaaaaacatgtgtttaactttcatcaaattaaaaaagtgtcaTTGTGCAATGAATTCGCATTATTTTCAAATGCCAAAGCGAATATTATAACCCTTGAATCTATATCAGAAAAAGAAGAACACGAAAGTTTAGTAAAGGAAGAAATCAACAATGATTTTGCTGATGAAAGTAATTTTGATAATGATTATTCTGAGCATGACAATGAATCTATAGTAATAGAGTATGAACCTAAGATTAATAAAGACACTTTCCCAGATATACCTGTAATGGCCATAGACATAAACAACAAACCAATAGATAATCTAAATGAAAAAGAATTCAACTGTGATAAATGCAATGAGAAATTTAAAACTGCAAATTCATTAAACATGCATAAGAGGaaacataaagaaaaaaaagactTAGAGAAGAAGTACCAATGTTCTTTATGTATGCgtaaatttataagtaaatcTGGTTTGACGAATCATTTAAGTATCCATGGACGGAAAGATGATATTAAATATTCATGCGGTAGTTGTAAAAGGGAGTTTAAACATAAGGCGCACTTAGACAATCACATGGTGACGTTACATGCCAATGAAAAAGGTTTCAGCTGTGAATATTGTTTGAAAAACTTTGCGACACAAGAGAGTTTGGAAATCCATAAGGAACTgcataaaattgataaaaagcACTCATGTCAGTACTGCAATAAGTCTTTTTACATGCTGTCAACATTAACGGATCACATCAGAACTCATACTGGAGAGAAGCCGTATCTTTGCTCCACGTGCGGACGAGGCTTCAGCCAGAAGACGAACCTTGCGCAGCACATGCGGCGCCATCTTGGTCTCAAACCCTTCGCGTGCGAGCAGTGCACACAGAGATTCGTGTCGAAAGGCGAGTTAGTCGCGCACACGAGGAAACACAGCGGCGCGCATCCATTCATATGCGACTCGTGCGGAAACGGATTCACCACCTCCTCCTCGCTGGTCAAGCATCGGCGCACGCACAGCGGCGAGCGCCCCTTCGCCTGCGACCTGTGCCATATGAGATTCGCCGCATCAGGGACGCTAAAGAACCACCGTCGCACTCATACGGGAGAGAAACCATATCAGTGCAATCACTGCGAGAAGGCGTTCGTGCAGAAAAACGATCTGGTGTCACATGTCAGgtGTCACACCGGCGAACGGCCATACGTATGCAACGTATGCGGCAGCGCGTTCCGCAAGCCCGCTGCACTACGCAGCCATCACAAGATGCATGCCAGGGACAAGCTCATACCCTACTGA
Protein Sequence: MESNKLDSTNICRTCMCEGTNMRSVFLKLQDEKSATDLLEFIANISINSDDNLPKQVCDKCERFLCKAAYFKSRCLDVESKLRKLFTDESVASLSVIKQENKASESIEEPYQCSVCYSKYSETAELEKHVFNFHQIKKVSLCNEFALFSNAKANIITLESISEKEEHESLVKEEINNDFADESNFDNDYSEHDNESIVIEYEPKINKDTFPDIPVMAIDINNKPIDNLNEKEFNCDKCNEKFKTANSLNMHKRKHKEKKDLEKKYQCSLCMRKFISKSGLTNHLSIHGRKDDIKYSCGSCKREFKHKAHLDNHMVTLHANEKGFSCEYCLKNFATQESLEIHKELHKIDKKHSCQYCNKSFYMLSTLTDHIRTHTGEKPYLCSTCGRGFSQKTNLAQHMRRHLGLKPFACEQCTQRFVSKGELVAHTRKHSGAHPFICDSCGNGFTTSSSLVKHRRTHSGERPFACDLCHMRFAASGTLKNHRRTHTGEKPYQCNHCEKAFVQKNDLVSHVRCHTGERPYVCNVCGSAFRKPAALRSHHKMHARDKLIPY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00410566; iTF_00411710;
90% Identity: -
80% Identity: -