Lstr038316.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421925.1:8100018-8103022[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.026 2.3 10.1 1.4 1 23 134 157 134 157 0.94 2 19 0.0017 0.15 13.9 1.5 2 23 229 250 228 250 0.97 3 19 0.0086 0.75 11.6 0.3 1 23 254 276 254 276 0.98 4 19 0.0041 0.36 12.7 0.8 1 23 281 304 281 304 0.96 5 19 0.29 26 6.8 4.3 2 23 311 333 310 333 0.95 6 19 5.2e-06 0.00046 21.8 0.3 2 23 341 363 340 363 0.97 7 19 0.026 2.3 10.1 3.6 1 23 369 391 369 391 0.94 8 19 0.0039 0.34 12.7 0.7 1 23 397 419 397 419 0.99 9 19 1.9 1.7e+02 4.2 0.2 1 9 425 433 425 437 0.81 10 19 0.00069 0.061 15.1 0.5 1 23 496 519 496 519 0.92 11 19 0.26 23 7.0 0.1 2 22 549 569 548 571 0.88 12 19 0.043 3.8 9.4 0.1 2 23 594 615 593 615 0.95 13 19 0.0006 0.052 15.3 0.1 1 23 619 641 619 641 0.98 14 19 2.2e-05 0.0019 19.8 0.4 2 23 647 669 646 669 0.96 15 19 1.9 1.7e+02 4.3 0.7 2 23 677 699 676 699 0.87 16 19 0.00021 0.019 16.7 0.4 2 23 707 729 706 729 0.95 17 19 0.0022 0.19 13.5 4.3 1 20 735 754 735 757 0.92 18 19 8.9e-06 0.00078 21.0 0.9 1 23 763 785 763 785 0.99 19 19 0.00064 0.056 15.2 3.3 1 23 791 814 791 814 0.97
Sequence Information
- Coding Sequence
- ATGTCTACAAAGACATTTAATTCTTCCATATCAAAACACATTTACTTACCACATGACTTATCGTACCGTCTGGCTGATGATAGCAGAAGAAGCATAGCAAACGAGTGGTGCCAAAGTATCACGAAGAAAAGTTTCGTGAAAATAGAATCCACACCGAAGAAACCACAAAAGACTCGCAGTAACACTGCTGGCGTTGTCAAAGCAGGAAAAGCACATCTGCTAAAGACATACAGCCAAAAGAGTAATAAAAGAGTCGCAAGTAGAAAACATGCCGCAAGGGATGAGACAAAAGAGACAGATCCAAAGCCTATAATAGAGATTCATATGCAGCGGAACAATGTTAGAGAGCTTTTAGCAAATTCTAACGCTACACCAATTCGTTGCCACGGCGATATCGGCTATACGTGTTGCTTCTGTTCCAACCAGTTCCCAAATCCCGCAGACCTCAAAACCCACACGATTCAAGGTCACGACCAAAAAACCAAGCAAAAGTTTATGGGAGGAAGGGCCATGGATTCTTACATAGTTAAACTAGATATTACTTCATTACGCTGCGAACTCTGCGCCACAAACGTGGACACTTTAGAGCTAATGGTTCACCATTTAACAGAATGCCATGGAAAGAAACTTTACACAGATATTAAGAATCACATTCTCCCGTTTAAGTTCGATGATGATAAAATGCGATGCGTAGTTTGTAAACAAGAATTTAATTCATTCAAACACCTGCAAGAACACATGATTGTGCATTTCAGGAACTATGTCTGCGATATATGTGATAGTGGATTTATTAATCGAAGAATGAAGAGAGCCCACGCTAAAACTCATTTGACTGGTGAATTTGAATGCAGCACATGTTCGAAAGTGTTTGACACTgtactaaaactaaaatcacACGAAAGACAGGTGCATACTACAATAAAGTACAACAAATGTGGTCATTGTAGCGAAAAATTCAAAGACTTCAAACATAAACTTAAGCATCTAGCAGTTGTTCACGGGATTAAACAGGAAAAATCGAAATGTAAAGCGTGCGATAAAGCTTTCAGTTCTCCGTCAGCTCTAAGAGTTCACATTAAACGAGATCATTTAGTAGAGAGGCACCATAAATGTGACCAATGTGACATGACGTTCTACTCGATAAGAGAGCTGGAGCACCATTCGGTGAAGCACTCTGGAACGAGGGAGTTCCAGTGTGACGTATGTTATAAATACTACGGTCTGAGAAAAACTCTGGTAGAACACATGAGGATTCATATGAACGACCGTCGATTCGAATGCCCGCATTGCGGTATCGCAAGAAGAACTAGGATTATCACAATCGATGCAACTAATCAAAGCGCGGGTATCAAGCTTGCTATCTCACCGAACGTCTTGCGACTGCCCAAGGGCGGCCCCAGTGAGACGAGGAAGAACCTGCATAATCTAGGTCAGATTTTACTCAATTCTAATGCGACACCTATAAAAGCCCACGATATGCGGGGGTACATGTGCGTTTTCTGCCCTAAGCGGTTTCCCGAGCCGCGAAatctaaaaaaacattttctagAAGAGCACAATGATGACAGATTGATAAGGCGCATGTCTGGCATGTCGGGCTCTCCACTCTCCACTCACGTGGTCAAATTAGACATTACGCTTCTGAACTGCGCTCTGTGCGATACTGACTTTGACACGCTAGAGGACTTCGTACACCATTTAGTAGCGGTCCATGGTAAACATTTGTACACTGATGTCCGTAATCAGTTgctgcctttcaaatttgacacGCCGGAGTTGAGCTGCGCAGTCTGCTCTGTATCATACGGCAGCTTTAAACTTCTGCAGCAACATATGAATGCACACTTCAGAAATTATATCTGCAATATTTGCAACGCCGGCTTTGTGGTCGAGCGACTGCTGTCGCGTCATATTCGCCAGCATGGTGACGAAAAGATCCAGTGTCCTGAATGCGGAAAGACTTTTATCAACAAGATGAAAATGCGTGAGCACGTTAAACGTGTACACTTGCGCTTAGATAAGAGGAATAAATGCCAATTCTGCAACGAAAAGTTCGTAGACTATTGGAGGAAGGTCGATCATATGGTCAAGGAACACGGAGTTCCCTCGGTAGTCCTAAAGTGCGGGGCGTGCGATCGCACTTTTGTCAACCAACGAGCTCTGGCTCGACACACGAAGAAGGATCATCTCATGGAGAGGAAACACAAATGTCCTCATTGTGAAATGAAGTTCTTTAGCTCAAGCGGGCTAAAGAAACATTTACCGAAACATACGGGTATAAAGAATTACAAATGCGAAGTGTGTTCCAAAGAGTATGGGAGAAAGACCACTCTGACTGAACACATGCGCATTCACGCTGACGATAGAAGATTCTCATGCGCTCATTGCGGGCTAGCTTTCATACAGAAGTGCAGCTTGAAAGGACATTTGCGTTCTAAGCATGGCGAAATCGTTTAA
- Protein Sequence
- MSTKTFNSSISKHIYLPHDLSYRLADDSRRSIANEWCQSITKKSFVKIESTPKKPQKTRSNTAGVVKAGKAHLLKTYSQKSNKRVASRKHAARDETKETDPKPIIEIHMQRNNVRELLANSNATPIRCHGDIGYTCCFCSNQFPNPADLKTHTIQGHDQKTKQKFMGGRAMDSYIVKLDITSLRCELCATNVDTLELMVHHLTECHGKKLYTDIKNHILPFKFDDDKMRCVVCKQEFNSFKHLQEHMIVHFRNYVCDICDSGFINRRMKRAHAKTHLTGEFECSTCSKVFDTVLKLKSHERQVHTTIKYNKCGHCSEKFKDFKHKLKHLAVVHGIKQEKSKCKACDKAFSSPSALRVHIKRDHLVERHHKCDQCDMTFYSIRELEHHSVKHSGTREFQCDVCYKYYGLRKTLVEHMRIHMNDRRFECPHCGIARRTRIITIDATNQSAGIKLAISPNVLRLPKGGPSETRKNLHNLGQILLNSNATPIKAHDMRGYMCVFCPKRFPEPRNLKKHFLEEHNDDRLIRRMSGMSGSPLSTHVVKLDITLLNCALCDTDFDTLEDFVHHLVAVHGKHLYTDVRNQLLPFKFDTPELSCAVCSVSYGSFKLLQQHMNAHFRNYICNICNAGFVVERLLSRHIRQHGDEKIQCPECGKTFINKMKMREHVKRVHLRLDKRNKCQFCNEKFVDYWRKVDHMVKEHGVPSVVLKCGACDRTFVNQRALARHTKKDHLMERKHKCPHCEMKFFSSSGLKKHLPKHTGIKNYKCEVCSKEYGRKTTLTEHMRIHADDRRFSCAHCGLAFIQKCSLKGHLRSKHGEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -