Lstr035723.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lathronympha strigana
Gene Symbol
-
Assembly
GCA_949128165.1
Location
OX421923.1:1244032-1254403[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0039 0.35 12.7 4.8 3 23 223 244 221 244 0.92
2 20 1.9 1.7e+02 4.2 0.9 1 23 258 281 258 281 0.95
3 20 0.0095 0.83 11.5 0.3 1 23 286 308 286 308 0.98
4 20 0.004 0.35 12.7 8.5 1 23 324 346 324 346 0.96
5 20 0.011 0.97 11.3 11.1 1 23 352 374 352 374 0.96
6 20 0.11 9.7 8.1 8.1 1 23 380 402 380 402 0.96
7 20 0.021 1.8 10.4 4.2 1 23 408 430 408 430 0.98
8 20 0.004 0.35 12.7 4.9 1 23 436 458 436 458 0.98
9 20 1.8e-05 0.0016 20.1 5.5 1 23 464 486 464 486 0.99
10 20 0.00039 0.034 15.9 4.9 1 23 492 514 492 514 0.99
11 20 3 2.6e+02 3.7 2.5 1 23 520 542 520 542 0.97
12 20 0.00048 0.043 15.6 8.2 1 23 548 570 548 570 0.99
13 20 0.0075 0.66 11.8 7.2 1 23 576 598 576 598 0.99
14 20 0.00076 0.067 15.0 7.2 1 23 604 626 604 626 0.98
15 20 4.8e-05 0.0042 18.7 1.1 1 23 632 654 632 654 0.98
16 20 3.1e-05 0.0027 19.3 2.3 1 23 660 682 660 682 0.98
17 20 0.0011 0.093 14.5 1.8 1 23 688 710 688 710 0.99
18 20 0.00019 0.017 16.8 4.5 1 23 716 738 716 738 0.98
19 20 5.6e-05 0.005 18.5 4.8 1 23 751 773 751 773 0.98
20 20 0.00073 0.064 15.0 2.8 1 23 779 802 779 802 0.97

Sequence Information

Coding Sequence
ATGGATGTGATAAATTCGTGTCGCTGCTGCCTGCGGTGTCCTCCGGACAAGGACCTGACGACGCCGTACACACAACTCGGTATAACAGAGATATATGCCGACATGCTCAAACAGTGCTTCGATATAGATGTAAGTATGCATGCACGACATTCCTTAGGCCTGGTAGCGAGCGATGAAGGGTCGCATGGCATTTGCACGACGTGCGTGGGCCGCCTGCGAGACGCGAGAAACTTCAAGTTGCAAGTGCAGTGCAGCCAGGACGAGCTGCAGGCATGGCTGCAGGGAGCGAGCCTTGTCAAAGAGGAAGAGTCCGCAGTGTGGCCAGACATGCAGGATGGAGACGGGTTCTGTGAGGAGCCTGAGTCGTGCGAAGAGCCTCCTGTCAAGCCTGAGATCCTGGATGAAGATGGGACACCTGATGAGACATTGCAGGAGGAACCCGCAGTGGAGCCTGGAATGCAGGAAGGAGACGGGAATAGTGGCGAGCCTGTATCTCATGAAGAGTCCCCGGTCAGGCCAGAGATGCTGGATAAAGACAAGGCACCTGATGAGATGTTGCTGTGTTCGAATGTCTGCGCCAGGAAACAGCTGGCGATGGCTTGTTCTGTGGTGCTCGAGCGCCTCCCATGCGATGTGACGGTTCATAGTGGAGACAAACCGTACGGCTGCGACCACTGTGGCAAATGTTTCAGAAACAAATCTATACTAAGCAAACATAAGCAAGACATGCACTTATCGACCGAACCTCTATCTTATTCAAACGACAAAACGTTTGCTTGTGATTTCTGTAGTTCTACATTCCAAACTAAGCTCCTTGTAACGGAACACGAGAAAAAGGAACACGGTGTTACTAATTTCATGTGCGCTAACTGTGAGTATATAACGGTTGATAAGAAAAGTCTAGAAACACATGTAAAGAGTCAcactacaaataaaatttttAGTGTGGCTCAAAGTGGCGGGAAGCCTCACGCATGCAGCTACTGTAATTACAGATGCAACAACAGATCAGACCTTCAACGCCACCATATGAGACACACCGGTGAGAAGCCTCATGCATGCAGCTACTGTAATCACAGATGCACTACCAAATCAGACCTTCAACGCCACCATATGAAACACACTGGTGAGAAGCCTCATGCATGCAGCTTCTGTAATTACAGATGCAACAGCAGACAAGACCTCAAACGCCACCATATGATACACACTGGTGAGAAGCCGTACAACTGTGATCACTGCGACTTCAAGTGCCGTGATATTTCAACATTGCGTGGTCACCGGATGATTCATACCGGGACTAAGCCACATCAATGTGGCTATTGTAATTACAAGTGCATTCGGAAAAAAGATCTTCTAGTTCACGAAAGGTCGCATACTGGAGAGAAGCCGTACAAGTGTAGTCATTGCGACTATAAGTTTAGTGCTAAATCATCCTTAAGAAAACACGAGCGGAGACATACTGGTGAGAAGCCTTTTCAATGTGACTACTGTGATTACAAATGCAATTATAAAACATACTTAATAAAACACCTACTGACGCACACTGGCGCGGAACCATTTCAGTGTGGCATTTGCGAGTTCAAGTGCTGGGAAAAAAACCGATTACAAGTCCACCAAAATAAGCACACTGGAGAAAAGCTATACAAGTGTAGCCACTGTGATTACAAATGCAACTATAAATCAAACTTGTCTATACACCAAAAGAGACATAACGGGACGGAGCCATTTAAATGTAGCACTTGCGACTACACATGCTGGCAGAAAGTACACCTACGAACCCATCAAAGGACACACACCGGAGAGAAACCGTACAAATGTGGTCATTGTGACTACAAGTGCAGTCACGCTTCAAGCTTTCGAAGACACGTAATGATACATACTGGTGAGAAGCCTTTTCAATGTAGCGACTGTGATTACAAAAGCGGTGACAAGTCTTATTTACAAAGACATCAGTCGATACACTCCGCGGCGAAGCCATTTAAATGTAGCTACTGCGACTACGCGTGTAGAATGAAATCTAACCTGGAAGTCCACGAAAGGATACATACCGGAGAAAAACCGTACAAATGTGGTTATTGCGACTACAAGTGCGGTGGCAGGTCAGCCTTACGAAACCATGAAATGACACATGCTGAAGAGAAGCCTTTTCAATGTAGCGACTGTGATTACAAATGCATTATGAAGTCGTACTTACAACGACATCAGTTGAAACACACTGGGCCGAAGCGGAAACAAAAACGTGAGAATGGTTTCGTATGTAGCTCCTGTGATTACAAATGCAGTCAAAAATCATCCTTACTGAAGCACCAGAGGACTCACACTGGTGAGAAACCTTTTACCTGTAACGACTGCGGCTACGCGAGTCGATATAAACATGTACTACGAAAACACATACTGAGGAAACATTTCGGTGAAAAGCCTTAG
Protein Sequence
MDVINSCRCCLRCPPDKDLTTPYTQLGITEIYADMLKQCFDIDVSMHARHSLGLVASDEGSHGICTTCVGRLRDARNFKLQVQCSQDELQAWLQGASLVKEEESAVWPDMQDGDGFCEEPESCEEPPVKPEILDEDGTPDETLQEEPAVEPGMQEGDGNSGEPVSHEESPVRPEMLDKDKAPDEMLLCSNVCARKQLAMACSVVLERLPCDVTVHSGDKPYGCDHCGKCFRNKSILSKHKQDMHLSTEPLSYSNDKTFACDFCSSTFQTKLLVTEHEKKEHGVTNFMCANCEYITVDKKSLETHVKSHTTNKIFSVAQSGGKPHACSYCNYRCNNRSDLQRHHMRHTGEKPHACSYCNHRCTTKSDLQRHHMKHTGEKPHACSFCNYRCNSRQDLKRHHMIHTGEKPYNCDHCDFKCRDISTLRGHRMIHTGTKPHQCGYCNYKCIRKKDLLVHERSHTGEKPYKCSHCDYKFSAKSSLRKHERRHTGEKPFQCDYCDYKCNYKTYLIKHLLTHTGAEPFQCGICEFKCWEKNRLQVHQNKHTGEKLYKCSHCDYKCNYKSNLSIHQKRHNGTEPFKCSTCDYTCWQKVHLRTHQRTHTGEKPYKCGHCDYKCSHASSFRRHVMIHTGEKPFQCSDCDYKSGDKSYLQRHQSIHSAAKPFKCSYCDYACRMKSNLEVHERIHTGEKPYKCGYCDYKCGGRSALRNHEMTHAEEKPFQCSDCDYKCIMKSYLQRHQLKHTGPKRKQKRENGFVCSSCDYKCSQKSSLLKHQRTHTGEKPFTCNDCGYASRYKHVLRKHILRKHFGEKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-