Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421927.1:75132-84803[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 7.9e-06 0.0007 21.2 0.8 5 23 184 202 182 202 0.97

2 12 5.1e-05 0.0045 18.6 3.5 1 23 220 242 220 242 0.98

3 12 0.00017 0.015 17.0 0.4 1 23 248 270 248 270 0.96

4 12 2.9e-05 0.0026 19.4 2.5 1 23 276 298 276 298 0.97

5 12 0.00016 0.014 17.1 4.6 2 23 305 326 304 326 0.96

6 12 1.8e-06 0.00016 23.2 0.4 1 23 332 354 332 354 0.98

7 12 2.3e-08 2e-06 29.2 1.0 1 23 365 387 365 387 0.97

8 12 0.0015 0.13 14.0 0.1 3 23 395 415 393 415 0.98

9 12 8.5e-05 0.0075 17.9 1.9 1 23 421 443 421 443 0.98

10 12 1.8e-05 0.0016 20.0 0.7 3 23 451 471 449 471 0.97

11 12 2.7e-05 0.0024 19.5 1.2 1 23 476 498 476 498 0.97

12 12 3.5e-05 0.0031 19.2 1.9 2 23 505 526 504 526 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	7.9e-06	0.0007	21.2	0.8	5	23	184	202	182	202	0.97
2	12	5.1e-05	0.0045	18.6	3.5	1	23	220	242	220	242	0.98
3	12	0.00017	0.015	17.0	0.4	1	23	248	270	248	270	0.96
4	12	2.9e-05	0.0026	19.4	2.5	1	23	276	298	276	298	0.97
5	12	0.00016	0.014	17.1	4.6	2	23	305	326	304	326	0.96
6	12	1.8e-06	0.00016	23.2	0.4	1	23	332	354	332	354	0.98
7	12	2.3e-08	2e-06	29.2	1.0	1	23	365	387	365	387	0.97
8	12	0.0015	0.13	14.0	0.1	3	23	395	415	393	415	0.98
9	12	8.5e-05	0.0075	17.9	1.9	1	23	421	443	421	443	0.98
10	12	1.8e-05	0.0016	20.0	0.7	3	23	451	471	449	471	0.97
11	12	2.7e-05	0.0024	19.5	1.2	1	23	476	498	476	498	0.97
12	12	3.5e-05	0.0031	19.2	1.9	2	23	505	526	504	526	0.98

Sequence Information

Coding Sequence: ATGGAGTCCAGTGATATGCAGGAGGTGCGAGTGAAGACGGAGGTCGCCGAACATCTGGAAAACCTGCGGGCTATCATATTCGCCCTCACCGATAAGGCTCTCCTCTCCCTCTCCATGTCCAGTGTGTTTGTATTATTGGCAGAATATATGAAGGCTGAGCCCACAGCGACGGAGACTGTGGAGGTGAAACTGGAGCCAGTACCAGCGGACTCAGACCCGGAGGACCCGGAGGATGTCGGAGAGTTGCAGCCGCAAGACCTGGTCTTCACTAAACATATGTGCATCAAGGTAGAGGCGGAATTCGTGAAGGACGAGCCAGAGGGAGAAGGCGCCGGTGCGAGCGAGACAGCAGCTCCCAGCGGAAACGAGACAGTTCCCAGCGGCGAGCCGGCAGGACAGAGCGAGGACACTTGCGAAAGTGGGACGGCTGCAGAGACGGAAGATGAACAGAAAGAGGAGGTCTCTGTAAACTCTGCTGTTGCGTGTGTCGCTGAACATGCGCCCAAGCGCCAAAAACGTTCGAACGCCGTCTCAGACAAATACGTCTGCGAATGCGGCAAGAAATTCAAGCAGCTGAGCAACTTAAAGGAACATCAACGAATACACACAGAGGACCGGTCGAACTCCATTGCTGAGGCCGAACATGCGAGTGGCACTTTCTCTTGTGAAATATGCGCGAAGACGTTCAAGTCGTCGTGCGACCTGAAGCTGCATACTCGCTCCCATACCAGAGACAAACCCTTCGCCTGTGAAGTGTGCGAACAGCGGTTCACGAGGTTAAACTCCTTAAAAGATCATTTGCTCCTTCATTCAGGAGAAAAACCTTTCGCTTGCAAACAGTGTGGCAAGCGTTTCTCCAAAACGTTTACTCTAAAGAACCATGAGCGTATTCACACAGGGGTAAAACCCTGCGTCTGCAAAGTTTGCCATAAGCAATTCAGGCTTCCAAGTACTCTGACAAAACACGAACGTATACATACAGGTGTAAGACCGTATTCTTGCCCAGTATGTAAGAAAGCGTTTACGCAGCTGTCCGGTATGCAAAGACATGAACGAGTACACTTAGACAAAAGCGCTGTTACACCCCATCCTCACCCCTGCCAAGTTTGTGGAAAGAGATTCTCGTCGCCAAGCGAGTTGAGGCGACATCTACGTATTCACACTGGAGAAAAGCCATTTTGGTGTGATGTTTGTGATAAAGGGTTCGCACAAGGAGTCGCGTTAAAATTGCACAAACGCAGTCATACAGGAGAGAAGCCATACGCCTGCACTACATGTAACAAGAGATTCTCTGATTCAAGAGTATTGAAGGGACATAAACGAACACATACAGGTGAGAAACCTTTTGGCtgtgaaatatgtaataagaatTTCGCTCGATTGAGTACTTTGAAGAAACATGAGGAAACACACATGAAAAAATTACATTCCTGCAAGAACTGTCCAAAAAAGTTCAGGGAATCTGAAGCGTTGATTCAACATGTACGTATCCATACTGGTGAacaactgaacaaatgtcaaacgTGTAAAAAGGAGTTTACGAGAATGGATGCTTTAAAGAGACATGAAAGAATTCATAATAGATAA
Protein Sequence: MESSDMQEVRVKTEVAEHLENLRAIIFALTDKALLSLSMSSVFVLLAEYMKAEPTATETVEVKLEPVPADSDPEDPEDVGELQPQDLVFTKHMCIKVEAEFVKDEPEGEGAGASETAAPSGNETVPSGEPAGQSEDTCESGTAAETEDEQKEEVSVNSAVACVAEHAPKRQKRSNAVSDKYVCECGKKFKQLSNLKEHQRIHTEDRSNSIAEAEHASGTFSCEICAKTFKSSCDLKLHTRSHTRDKPFACEVCEQRFTRLNSLKDHLLLHSGEKPFACKQCGKRFSKTFTLKNHERIHTGVKPCVCKVCHKQFRLPSTLTKHERIHTGVRPYSCPVCKKAFTQLSGMQRHERVHLDKSAVTPHPHPCQVCGKRFSSPSELRRHLRIHTGEKPFWCDVCDKGFAQGVALKLHKRSHTGEKPYACTTCNKRFSDSRVLKGHKRTHTGEKPFGCEICNKNFARLSTLKKHEETHMKKLHSCKNCPKKFRESEALIQHVRIHTGEQLNKCQTCKKEFTRMDALKRHERIHNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -