Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421922.1:1283017-1296711[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.0068 0.6 12.0 2.2 1 23 170 193 170 193 0.96

2 22 0.00094 0.082 14.7 1.6 1 23 215 237 215 237 0.99

3 22 0.00062 0.054 15.2 1.1 1 23 242 264 242 264 0.96

4 22 0.036 3.1 9.7 0.2 2 23 270 292 269 292 0.95

5 22 4.3e-05 0.0038 18.9 1.0 1 23 298 320 298 320 0.99

6 22 0.025 2.2 10.2 0.3 1 23 326 349 326 349 0.93

7 22 0.015 1.3 10.9 3.3 1 23 358 380 358 380 0.98

8 22 0.0002 0.017 16.8 0.3 3 23 388 408 387 408 0.98

9 22 3.3e-06 0.00029 22.4 0.5 1 23 414 436 414 436 0.98

10 22 0.0014 0.12 14.1 0.5 1 22 442 463 442 463 0.92

11 22 0.0014 0.12 14.1 0.5 1 22 482 503 482 503 0.92

12 22 0.0014 0.12 14.1 0.5 1 22 522 543 522 543 0.92

13 22 0.0014 0.12 14.1 0.5 1 22 562 583 562 583 0.92

14 22 0.0014 0.12 14.1 0.5 1 22 602 623 602 623 0.92

15 22 0.0014 0.12 14.1 0.5 1 22 642 663 642 663 0.92

16 22 0.0014 0.12 14.1 0.5 1 22 682 703 682 703 0.92

17 22 0.0014 0.12 14.1 0.5 1 22 722 743 722 743 0.92

18 22 0.0014 0.12 14.1 0.5 1 22 762 783 762 783 0.92

19 22 0.0014 0.12 14.1 0.5 1 22 802 823 802 823 0.92

20 22 0.0014 0.12 14.1 0.5 1 22 842 863 842 863 0.92

21 22 0.0014 0.12 14.1 0.5 1 22 882 903 882 903 0.92

22 22 0.00041 0.036 15.8 3.4 1 23 922 944 922 945 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.0068	0.6	12.0	2.2	1	23	170	193	170	193	0.96
2	22	0.00094	0.082	14.7	1.6	1	23	215	237	215	237	0.99
3	22	0.00062	0.054	15.2	1.1	1	23	242	264	242	264	0.96
4	22	0.036	3.1	9.7	0.2	2	23	270	292	269	292	0.95
5	22	4.3e-05	0.0038	18.9	1.0	1	23	298	320	298	320	0.99
6	22	0.025	2.2	10.2	0.3	1	23	326	349	326	349	0.93
7	22	0.015	1.3	10.9	3.3	1	23	358	380	358	380	0.98
8	22	0.0002	0.017	16.8	0.3	3	23	388	408	387	408	0.98
9	22	3.3e-06	0.00029	22.4	0.5	1	23	414	436	414	436	0.98
10	22	0.0014	0.12	14.1	0.5	1	22	442	463	442	463	0.92
11	22	0.0014	0.12	14.1	0.5	1	22	482	503	482	503	0.92
12	22	0.0014	0.12	14.1	0.5	1	22	522	543	522	543	0.92
13	22	0.0014	0.12	14.1	0.5	1	22	562	583	562	583	0.92
14	22	0.0014	0.12	14.1	0.5	1	22	602	623	602	623	0.92
15	22	0.0014	0.12	14.1	0.5	1	22	642	663	642	663	0.92
16	22	0.0014	0.12	14.1	0.5	1	22	682	703	682	703	0.92
17	22	0.0014	0.12	14.1	0.5	1	22	722	743	722	743	0.92
18	22	0.0014	0.12	14.1	0.5	1	22	762	783	762	783	0.92
19	22	0.0014	0.12	14.1	0.5	1	22	802	823	802	823	0.92
20	22	0.0014	0.12	14.1	0.5	1	22	842	863	842	863	0.92
21	22	0.0014	0.12	14.1	0.5	1	22	882	903	882	903	0.92
22	22	0.00041	0.036	15.8	3.4	1	23	922	944	922	945	0.92

Sequence Information

Coding Sequence: ATGTCCGACATTTGCAGACTCTGTTTATCGTTCTCTACCGAAAATATGCGGCCTTTAACTGAATGTGAAGGAATTCTTTACAATGTTGTGAGTTTTCAgattactaaaaataatgtattacCAAATCATATTTGCGCATTATGTTTCAACAAGCTGATTGATTGCAATGACTTTTGCttacaagtacaaaaaaatcAAGAAAATCTTCATAAAGAACTAAACAAAGGAGAAAATGCTTTAAACAACTTTtatgaacaaataaaaaatcaaataaaacaagaaaCAAGCGACCTGATACATGAAAACAAAGAAACTATAGACAATGTAAatgattttttgttttctaaaattaaaacggAAGATTATTTAAATCCGGATTGTGATGTTGAATTTGATTCTGAAGATGATATACCACTTTTAAAAAGAGATATCAACATTGAAGATACACAAAGCATAAACAATACTAAAAAAGATATAGAAGCAAATTACccacataatatttttaatttcaaatgtcTTACATGTTTCGAAACATTCAAcagtcaaaataaattattaaatcattATAATAATGTTCACAAAGTAAAAGAAGAAATGAAAGGAAAACAGTACACTCAAATTGAGAATGATGGCAAAATTTTGTACAAATGTTATAAATGTGATAAAGTGTATGATAATGTGAGATCTGTGAATAAACATGCAAAGACACATTGTGATGAAAAGTTCCATTGTAAAGTTTGTGGAAGGACTTATAAAACTGTATCAGAGATCATAAGACATGGCAGAGCGCATAATGGCGCGAAGTTATCGTGTTCCTTTGGATGTGGCTTCGCTACAGTGTACTCCGGAGCCCTGAAGAGTCATGAACGGAGGCACAGGGAAGAATTCAAGTACAAATGCGAGACCTGCGGGAAGAGTTTCCAGGTGAAGACCTGGTACGAGCAGCACCAGAACATACACACTGGAGCCAAACCTTACGTATGTGATATCTGCAATATGGCTTTCCACATGGACAGGTACCTAAAGGCCCACCTTAGCGCCGTGCACGCCGACGTGTCGTCGAAAAAACGCTACGTGTGTGTTCACTGCGGGCATCCCTGCGGGAACATGAAGGCGCTCACGAGGCATTTAAAGGAACACGGGATAACGTCCAGCGTGCTTTGCGACTTGTGCGGGAAAACTCTGTCAAGTTCAGATCAGCTCGCCATCCATAGGAGGCTGCATACTGGGGTCAAACCTTATTCCTGCAGTGTTTGCAACAAAGTGTTTGCAAAGCGGTCCAACTTGAAGCTCCATGCGATCACACACAGCGGTGCGCGCGCGCACGCCTGCGCCGCGTGCGGCCGGCGCTACTCCCAGCGCAGCGCGCTGCTGCGGCACCGGCGCAGGTACTATCCTCGGAACTTGAAGCTCCATGCGATCACACACAGCGGTGCGCGCGCGCACGCCTGCGCCGCGTGCGGCCGGCGCTACTCCCAGCGCAGCGCGCTGCTGCGGCACCGGCGCAGGTACTATCCTCGGAACTTGAAGCTCCATGCGATCACACACAGCGGTGCGCGCGCGCACGCCTGCGCCGCGTGCGGCCGGCGCTACTCCCAGCGCAGCGCGCTGCTGCGGCACCGGCGCAGGTACTATCCTCGGAACTTGAAGCTCCATGCGATCACACACAGCGGTGCGCGCGCGCACGCCTGCGCCGCGTGCGGCCGGCGCTACTCCCAGCGCAGCGCGCTGCTGCGGCACCGGCGCAGGTACTATCCTCGGAACTTGAAGCTCCATGCGATCACACACAGCGGTGCGCGCGCGCACGCCTGCGCCGCGTGCGGCCGGCGCTACTCCCAGCGCAGCGCGCTGCTGCGGCACCGGCGCAGGTACTATCCTCGGAACTTGAAGCTCCATGCGATCACACACAGCGGTGCGCGCGCGCACGCCTGCGCCGCGTGCGGCCGGCGCTACTCCCAGCGCAGCGCGCTGCTGCGGCACCGGCGCAGGTACTATCCTCGGAACTTGAAGCTCCATGCGATCACACACAGCGGTGCGCGCGCGCACGCCTGCGCCGCGTGCGGCCGGCGCTACTCCCAGCGCAGCGCGCTGCTGCGGCACCGGCGCAGGTACTATCCTCGGAACTTGAAGCTCCATGCGATCACACACAGCGGTGCGCGCGCGCACGCCTGCGCCGCGTGCGGCCGGCGCTACTCCCAGCGCAGCGCGCTGCTGCGGCACCGGCGCAGGTACTATCCTCGGAACTTGAAGCTCCATGCGATCACACACAGCGGTGCGCGCGCGCACGCCTGCGCCGCGTGCGGCCGGCGCTACTCCCAGCGCAGCGCGCTGCTGCGGCACCGGCGCAGGTACTATCCTCGGAACTTGAAGCTCCATGCGATCACACACAGCGGTGCGCGCGCGCACGCCTGCGCCGCGTGCGGCCGGCGCTACTCCCAGCGCAGCGCGCTGCTGCGGCACCGGCGCAGGTACTATCCTCGGAACTTGAAGCTCCATGCGATCACACACAGCGGTGCGCGCGCGCACGCCTGCGCCGCGTGCGGCCGGCGCTACTCCCAGCGCAGCGCGCTGCTGCGGCACCGGCGCAGGTACTATCCTCGGAACTTGAAGCTCCATGCGATCACACACAGCGGTGCGCGCGCGCACGCCTGCGCCGCGTGCGGCCGGCGCTACTCCCAGCGCAGCGCGCTGCTGCGGCACCGGCGCAGGTACTATCCTCGGAACTTGAAGCTCCATGCGATCACACACAGCGGTGCGCGCGCGCACGCCTGCGCCGCGTGCGGCCGGCGCTACTCCCAGCGCAGCGCGCTGCTGCGGCACCGGCGCAGGCACCATTCATCCGAAAAGAAATGTCCAAAATTTGAAGCCACTTTCACCAGCCAAGCTGAACTAGGAGCTCATCAGAAAATTTGTTCTTCATGA
Protein Sequence: MSDICRLCLSFSTENMRPLTECEGILYNVVSFQITKNNVLPNHICALCFNKLIDCNDFCLQVQKNQENLHKELNKGENALNNFYEQIKNQIKQETSDLIHENKETIDNVNDFLFSKIKTEDYLNPDCDVEFDSEDDIPLLKRDINIEDTQSINNTKKDIEANYPHNIFNFKCLTCFETFNSQNKLLNHYNNVHKVKEEMKGKQYTQIENDGKILYKCYKCDKVYDNVRSVNKHAKTHCDEKFHCKVCGRTYKTVSEIIRHGRAHNGAKLSCSFGCGFATVYSGALKSHERRHREEFKYKCETCGKSFQVKTWYEQHQNIHTGAKPYVCDICNMAFHMDRYLKAHLSAVHADVSSKKRYVCVHCGHPCGNMKALTRHLKEHGITSSVLCDLCGKTLSSSDQLAIHRRLHTGVKPYSCSVCNKVFAKRSNLKLHAITHSGARAHACAACGRRYSQRSALLRHRRRYYPRNLKLHAITHSGARAHACAACGRRYSQRSALLRHRRRYYPRNLKLHAITHSGARAHACAACGRRYSQRSALLRHRRRYYPRNLKLHAITHSGARAHACAACGRRYSQRSALLRHRRRYYPRNLKLHAITHSGARAHACAACGRRYSQRSALLRHRRRYYPRNLKLHAITHSGARAHACAACGRRYSQRSALLRHRRRYYPRNLKLHAITHSGARAHACAACGRRYSQRSALLRHRRRYYPRNLKLHAITHSGARAHACAACGRRYSQRSALLRHRRRYYPRNLKLHAITHSGARAHACAACGRRYSQRSALLRHRRRYYPRNLKLHAITHSGARAHACAACGRRYSQRSALLRHRRRYYPRNLKLHAITHSGARAHACAACGRRYSQRSALLRHRRRYYPRNLKLHAITHSGARAHACAACGRRYSQRSALLRHRRRYYPRNLKLHAITHSGARAHACAACGRRYSQRSALLRHRRRHHSSEKKCPKFEATFTSQAELGAHQKICSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -