Lstr038536.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- ZFY
- Assembly
- GCA_949128165.1
- Location
- OX421925.1:10642890-10656745[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.00069 0.061 15.1 1.3 2 21 161 180 160 181 0.93 2 35 2.5 2.2e+02 3.9 0.1 1 23 214 237 214 237 0.95 3 35 8.7e-05 0.0077 17.9 0.8 2 23 243 264 242 264 0.95 4 35 0.061 5.3 9.0 3.4 2 21 268 287 267 288 0.93 5 35 0.05 4.4 9.2 0.2 2 23 331 353 330 353 0.94 6 35 8.1 7.1e+02 2.3 0.4 3 16 361 373 360 380 0.65 7 35 0.0016 0.14 13.9 0.2 1 23 386 408 386 408 0.98 8 35 0.0087 0.76 11.6 0.9 1 23 414 437 414 437 0.95 9 35 0.0085 0.74 11.7 0.2 1 23 446 469 446 469 0.97 10 35 1.2 1.1e+02 4.8 9.6 1 23 479 501 479 501 0.98 11 35 2.7 2.3e+02 3.8 1.2 2 10 622 630 621 642 0.83 12 35 0.0047 0.41 12.5 1.3 2 23 673 695 672 695 0.90 13 35 0.0041 0.36 12.6 4.2 1 23 700 723 700 723 0.96 14 35 0.039 3.5 9.6 2.5 3 22 728 747 727 747 0.94 15 35 0.00038 0.033 15.9 0.1 1 23 758 781 758 781 0.94 16 35 0.00013 0.011 17.4 3.9 1 23 788 810 788 810 0.98 17 35 0.0071 0.63 11.9 0.6 1 23 817 839 817 839 0.98 18 35 0.0021 0.19 13.6 1.7 1 23 860 883 860 883 0.96 19 35 7.9e-05 0.0069 18.0 0.2 2 21 995 1014 994 1015 0.94 20 35 0.018 1.6 10.6 0.3 3 23 1048 1068 1047 1068 0.97 21 35 0.0034 0.3 12.9 0.1 3 23 1076 1096 1074 1096 0.96 22 35 8.9 7.9e+02 2.1 7.5 1 22 1099 1120 1099 1120 0.94 23 35 0.00055 0.048 15.4 1.4 1 23 1132 1155 1132 1155 0.95 24 35 0.00021 0.019 16.7 0.5 1 23 1161 1183 1161 1183 0.96 25 35 4.9 4.3e+02 3.0 0.3 1 23 1217 1240 1217 1240 0.87 26 35 0.0022 0.19 13.5 0.2 3 23 1250 1271 1249 1271 0.97 27 35 0.00028 0.024 16.3 1.4 2 21 1397 1416 1396 1417 0.92 28 35 0.023 2 10.3 0.2 1 23 1450 1473 1450 1473 0.96 29 35 0.00019 0.017 16.8 0.3 2 23 1478 1499 1477 1499 0.96 30 35 0.72 63 5.6 2.2 2 21 1503 1522 1503 1523 0.92 31 35 2.1e-05 0.0019 19.9 1.0 1 23 1549 1572 1549 1572 0.95 32 35 0.0031 0.27 13.0 0.4 1 23 1578 1600 1578 1600 0.92 33 35 2.8 2.4e+02 3.7 0.1 3 23 1608 1628 1606 1628 0.97 34 35 0.36 32 6.5 1.8 1 23 1634 1657 1634 1657 0.94 35 35 0.019 1.6 10.6 2.4 2 23 1664 1686 1663 1686 0.95
Sequence Information
- Coding Sequence
- ATGAATCGTCAAGTGGATGTAAAAGCCCTAGTGTCCCACATAGTGAGAGGAGATGGCTTGGACAAATGTCGGATTTGTATGGGAGACACCACCGAAGGCCAGGTTTACCTCGGTGACACAGTCATGATGGACGGAGAACGACCGGTCACGCTTGCTGAACTTCTGGAAATAATCACAGGCATCGAGGTTCCCCTGGAGGAGGACCTTCCGGCCGGACTGTGCAACACATGCGCCCAGAGGGCCACGGAAGCTGCCAGCTTCCGAACTCTGTGCAGACAAGCCGCACGCCAGTGGGACACCACCCTTCAACTACTCACTAACATACCAaacaagttcaaaaataaaagcgTTTATATATTATTGGAGAGTGATGGAGTCACCATAATGAATAATTTGAAAGGTAACTCTGATGAACATGCTACTGAAAAGTCTCGAAATATTGAGAAAGAGATGAAAGTGAGAGATGTGAAGCATAATTGTTCATGTCCTGATTGCGGGAAGAAGTTTGCATATGCACAACACTTGTACCTGCATTTAAAGGAGTCTATGGACTTAAAGCGGGCCTGCTATGTCTGTGCCAAAATCATGACCAGAGATGATTTGATTCTACATTTAAAATCTGCCCATTACATTGATATTTATGATTGTAAGAAGTGTCCAGCATTGTTAAAGTCACGTCTGATGCTAGTACAGCACACACAGGTCGCACATAGCCGAGGTGCATGTACTTGTGGAGATTGCGGACGTAGCTTCAAGACCAGGCCAGCATACAATGCTCACCTGTCTGTGCATGCAAACAAAACTTGCCCTGGCTGCGACAAACTGTTCCGAAACCAAACATGCTATTTACACCATGTAAAAAAATGCTGTGATTTGGATATCAGTAATAAAACTCATCAGACGAAACATAAAGTGACTATAGAGGTTAAGAACAAGAAGAGTGAGAGAAAAACTAGAGTAGGACTCCGCGGGGCAGCTGATAAACAATGCATTTGTGATTATTGCGGTAAAGTACTAGCAGGGAAAAAGTTCATAACAGCGCACATACAGATAGTACATCTGAAAAACACACACAGGCCTTGCCCGTATTGTGGCAAGCTCCTGGCTTCAGCTCATATGGGGGAAcaccttaaaaaacatgaaatcgAAACTATATTTACGTGTGAATACTGTGGTATCGTTTTGAAAACTAAGTTGGGATATATTCAGCATATACGTCTCCACACTGGCGAAAAGCCGTATGCTTGCAAATACTGTGGTGAAACGTTCTCAGCATCTTCTAGAAGATCGGAGCATGTCCGTAAAACTCACAAATCAAATAACATTGTATTGAAGTATGCTTGTGAATACTGTCCGGCTCGATTCCAACTTCCTTACAAACTTAGGAATCATGTGTCGACAGTCCATAATAAGGAAGACACTGCTGCGGTTCCGTTCTGTTGCAAGATCTGTATGGAGAAATTCAGCAGTTGTAGGGGCCTCACACACCATACTCGGAAGCATCAGAAAGAGGggaaaGTCGAGACTTCGCCCCTCCTGCCCAACAGGATCTGCGGGCCCTGCGCAGACACTGTTACCCCCACAATCAACCTCATAGGCTACATCAAAGACTCCCACAGGAAATGGACCGAGGCCTCCAACTATCTTGACCAACTGGAATTTAAGCCCAACGTCAAAACTGCCTACATCGTCCTAGATGAATACGTACAAGACATAAATACTTACACGGAAAATGTCAAACGACCCCATTATCCTGAAAACGTGttcaagtattttaaaaaacgaaAGCAGCAACAAAACGCTCTTAAGAGGAGAAATGAGCTGGAAAGACAGATGATGGACTCGAAAATCAATACTGGCCTTAAATGTCCTGAATGCGAGAAAAGTTTCCTAtgcgtatataaatataatatgcatATGAGGTATTACGATAAACGAGCCTGCGTACATTGCAGGGAATTGATCAAACTCGAGGATTTGAAAGATCATTATAAATACCATGGAGTAGACACAATGCAATGTGACATTTGCTACGAAACTTTTAAGAAGAAAGACGCTTTTCAGAAGCATAAAGTGAATTATCACAGCAAGGGACCTTATTTTTGCTATATATGCAAACTCTCATATAGGGATCCACACCATTTGGCGTCTCATATGACGAGCAAGCATGAGCCTAGGATATGTCTAGGGTGCGATAAGAAATTCTCCAACGTGTACTGCTTCAGAACACACACTAGGCGTTGCAAGAATTCTCgaaaaaagggcggcatattCATTTGCGACATTTGCGCCAAAGTCTACAGCTCCAAATACGCCTTGAAAGTTCATTTGGAATATATACACATGAATAAAGAGCATTCACATCAATGCGAGCATTGCGGAAAAGTTTTCAACAGCGCGATACATCTCCTAGAACACAGTAACACGCATAACAGGGTACCAGACAGATTCGTTTGCAACATCTGCGGGGTACCAATGAGCACTCGACGCGGGTACCAAAGACATTATAAGCGTCATCTGAAAAACCCGAATTATACGCCGAGGCGCACTAAAAAAACTGCAAAGACCAAACCGAAATATCAGTGCGAGTTTTGTGATGAATCCTTCAATGTGTTTACTCATTTGCGAATGCATGTGATGAACGAGCATACAATGTATCATGAAGATTTTAAATTGGTCGTGGAAGACCCGGGACTGCCTCCAGGGCTCTGCAGAGCGTGCTCCGAAGACGCCATAGCAGCCGCACACTTCCGCCAACTCTCCATGGCGTCCAACCAACATTGGCATCAAACCGCCGACTCCCTAGCCTTCATACACGACCCCGAAGACGACAACCGGACCTACTACATCTTTTACGGCAACGGGGAGATGCTCATTAGAGAGGAACTACGAAAATCCATCTCTAAAGACGAACTAGTGGCGAACATTAATGATAAACCTGTCAAGCCGAAAAGATCCTACACGAAGTCTGCGGGGAAATGCCAATGTCCTGACTGTGGAAAAGATTTCCCCGTGGCTTACAATCTTAACGTCCATTTGAAGAATACCATGAAACGCGCGTGTGTTCGGTGTGGCTTAGTCATGGAGAGGGAAAAACTAGCCGACCATCTAGCTAAAGTCCACGGATGTCTGTACGCCGATTGTGATATTTGCTTCAAACTGTTTGACGACGAAACTTTACTCAAACAGCATTACATGATACATGATAGCAGGTTTTCGTTCGGTTGCCAGATTTGCGGAAGGGGTTATACTAATGACAGGGCGCTTAGAGCTCACATGTACGCCCACACTCTATTCCATTGCGTGTCCTGTAACTTGAGCTTCGAAAATCGACGCTGCTACAAACATCATCAAAAGAAATGCAAGTCTGCGAAACAACCAGTGGCGATGAACTTTACTTGCGACTATTGCGGACATGTTTATAACAAGAAACCTTCTTTACGTATCCATATAATACAGAAACATCTAAATGTCCTGCCTTACGTATGTGAAACATGCGGGAAGAGAACATCTACATTAGCACATTTGCGGTCCCACGAGGCAGTGCATACTACAGAAAGGAAGCTATATAAATGCGCTTGCGGCGCTGAAATGCGAACGGAGCTGGGCTACCATTTACATCAGAGAATACATACAGGAGAGAAACCTTACGAGTGTGAAGAATGCGGAGACAGATTCCTGTCAGCTTCCAGACGCTTGGATCATATTAAAAGGCGACATAGAAGCACTAAAGACATGCCTCACGGCTGTGACATATGTCAAGCTAGGTTCGTACGGCCGTTTGAGCTGAAGAAGCACTATTCCTCTGTTCACGACTCTGTAGTGCAAGTTATGCCAGCGAAGAAAAGGATTCGGAGGCAGATAATAGACGAATCTCTCTGCCCCGGCGGCTTGTGCGGCGCTTGCACCGCCAACGCTATCGCTGCCCAAGAATTCCGCTCCCTCGTCGCAGACTCCATCAAAATATGGTCATACGCCGTCAAACAACTCGAAATCATTCCCCTCAACAACACTCCCTCCCTCAAATCACTCTGTGCCTTCATCAGATCAGACAACCTTAACATCCAGATCGCCAAAGACTACTCAATCAATGAGAAAACTACCCCCATACAGAGACTGAAAACTAGAATGAACAGAAAGAAGAGCGATGAGCGGAAACCAAGAGTCCATCGGTCAGGGCCGCCATGTAAATGCAACGATTGTGGCAAAGAATTCATAAGCCCATATTACCTAAATGTGCACTTCAAAAATAGCGGACAGAAAGACGCGTGTGTCACATGTGGAGCGATTCTCCTAAGAGGGAAACAGATGAGAGATCATTTAGTGAAAGTCCATAGAGAAACAGCTTTCATCTGTAAAGAGTGCCCTGCTATTTTCAATAACGAAACAGATGCTAAAAAACACGAGAAAAAAGCTCACAAGACTGGTTTAACGTGTGGAGACTGCGGACGAAGTTTCCAAAGAAACGCGTCGTTTGAGACTCACGCTCAAATGCACGCTGTACGGACGTGCAGGACTTGCGGTGTACAGTTCACCAATAGAGCGTGCTATAGAGAGCATAGATCTAAATGCGAGCCTGACGCGAAACCTGACAGGGACACCGTACCTAGAAATAGGCGGTCAAATATTCGCGACCCGGCTCAGTTCACATGCgattattgtaaaaaaacctACACGTCTCGTCCACAATTGAAAAACCATATCCTATGGATACATATGGACGTGCGACCGCATCAGTGCCAATGGTGTGGAAAGCGTTTTTACACGCCAGCGCGCTTAGCGGAACACAGCGTAGTGCACACTAGGGAGAGGAACTTCGGTTGCGACATTTGCGGTGCTAAACTAGTTTCCAAGATGGCCGCCGTGTACCACAGGCGTCGTCACACGGGAGAGAAACCATATCGTTGTGAAGACTGTGGGGATTGCTTCATATCTGCTTCGCGTCGTTCTGAACACGCTAAAAGAAAGCACGGGAAAGGCCCGAGATTGCATTGCACTAGGTGTCCTTCCAGTTTTGTTAGAATACACGAGTTGAGAAGGCACATTGAGAAAGCACACAGCCATGTTGTTCCTATATTTGCTCTCAAAGGTGAAGTTGCGGAGAGCTAA
- Protein Sequence
- MNRQVDVKALVSHIVRGDGLDKCRICMGDTTEGQVYLGDTVMMDGERPVTLAELLEIITGIEVPLEEDLPAGLCNTCAQRATEAASFRTLCRQAARQWDTTLQLLTNIPNKFKNKSVYILLESDGVTIMNNLKGNSDEHATEKSRNIEKEMKVRDVKHNCSCPDCGKKFAYAQHLYLHLKESMDLKRACYVCAKIMTRDDLILHLKSAHYIDIYDCKKCPALLKSRLMLVQHTQVAHSRGACTCGDCGRSFKTRPAYNAHLSVHANKTCPGCDKLFRNQTCYLHHVKKCCDLDISNKTHQTKHKVTIEVKNKKSERKTRVGLRGAADKQCICDYCGKVLAGKKFITAHIQIVHLKNTHRPCPYCGKLLASAHMGEHLKKHEIETIFTCEYCGIVLKTKLGYIQHIRLHTGEKPYACKYCGETFSASSRRSEHVRKTHKSNNIVLKYACEYCPARFQLPYKLRNHVSTVHNKEDTAAVPFCCKICMEKFSSCRGLTHHTRKHQKEGKVETSPLLPNRICGPCADTVTPTINLIGYIKDSHRKWTEASNYLDQLEFKPNVKTAYIVLDEYVQDINTYTENVKRPHYPENVFKYFKKRKQQQNALKRRNELERQMMDSKINTGLKCPECEKSFLCVYKYNMHMRYYDKRACVHCRELIKLEDLKDHYKYHGVDTMQCDICYETFKKKDAFQKHKVNYHSKGPYFCYICKLSYRDPHHLASHMTSKHEPRICLGCDKKFSNVYCFRTHTRRCKNSRKKGGIFICDICAKVYSSKYALKVHLEYIHMNKEHSHQCEHCGKVFNSAIHLLEHSNTHNRVPDRFVCNICGVPMSTRRGYQRHYKRHLKNPNYTPRRTKKTAKTKPKYQCEFCDESFNVFTHLRMHVMNEHTMYHEDFKLVVEDPGLPPGLCRACSEDAIAAAHFRQLSMASNQHWHQTADSLAFIHDPEDDNRTYYIFYGNGEMLIREELRKSISKDELVANINDKPVKPKRSYTKSAGKCQCPDCGKDFPVAYNLNVHLKNTMKRACVRCGLVMEREKLADHLAKVHGCLYADCDICFKLFDDETLLKQHYMIHDSRFSFGCQICGRGYTNDRALRAHMYAHTLFHCVSCNLSFENRRCYKHHQKKCKSAKQPVAMNFTCDYCGHVYNKKPSLRIHIIQKHLNVLPYVCETCGKRTSTLAHLRSHEAVHTTERKLYKCACGAEMRTELGYHLHQRIHTGEKPYECEECGDRFLSASRRLDHIKRRHRSTKDMPHGCDICQARFVRPFELKKHYSSVHDSVVQVMPAKKRIRRQIIDESLCPGGLCGACTANAIAAQEFRSLVADSIKIWSYAVKQLEIIPLNNTPSLKSLCAFIRSDNLNIQIAKDYSINEKTTPIQRLKTRMNRKKSDERKPRVHRSGPPCKCNDCGKEFISPYYLNVHFKNSGQKDACVTCGAILLRGKQMRDHLVKVHRETAFICKECPAIFNNETDAKKHEKKAHKTGLTCGDCGRSFQRNASFETHAQMHAVRTCRTCGVQFTNRACYREHRSKCEPDAKPDRDTVPRNRRSNIRDPAQFTCDYCKKTYTSRPQLKNHILWIHMDVRPHQCQWCGKRFYTPARLAEHSVVHTRERNFGCDICGAKLVSKMAAVYHRRRHTGEKPYRCEDCGDCFISASRRSEHAKRKHGKGPRLHCTRCPSSFVRIHELRRHIEKAHSHVVPIFALKGEVAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00659633;
- 90% Identity
- -
- 80% Identity
- -