Lstr038304.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421925.1:8010896-8015867[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.043 3.8 9.4 0.1 3 23 207 228 205 228 0.94 2 31 0.003 0.27 13.1 0.3 2 23 234 256 233 256 0.92 3 31 0.0033 0.29 13.0 1.3 1 23 261 284 261 284 0.93 4 31 3.2e-05 0.0028 19.3 3.4 1 23 288 311 288 311 0.97 5 31 0.51 45 6.0 0.1 1 23 358 380 358 380 0.95 6 31 0.018 1.6 10.6 1.2 2 23 451 473 450 473 0.94 7 31 0.0021 0.18 13.6 3.4 2 23 479 501 478 501 0.96 8 31 0.0095 0.84 11.5 0.8 1 23 506 529 506 529 0.95 9 31 0.00069 0.061 15.1 1.6 3 23 533 554 532 554 0.97 10 31 5.1 4.5e+02 2.9 0.2 2 19 561 578 560 580 0.93 11 31 0.061 5.4 9.0 4.3 1 23 636 659 636 659 0.97 12 31 0.17 15 7.6 0.5 2 23 687 709 686 709 0.94 13 31 0.00014 0.013 17.2 0.1 1 23 731 754 731 754 0.94 14 31 1.2e-05 0.0011 20.6 0.4 3 23 761 782 760 782 0.94 15 31 0.014 1.2 11.0 0.2 1 23 788 811 788 811 0.95 16 31 0.0002 0.018 16.8 0.1 3 23 818 839 817 839 0.97 17 31 0.00041 0.036 15.8 4.3 1 23 843 866 843 866 0.97 18 31 0.089 7.8 8.4 0.2 2 23 873 894 872 894 0.96 19 31 0.0059 0.52 12.2 2.2 1 23 943 965 943 965 0.96 20 31 0.15 13 7.8 1.6 1 23 1035 1058 1035 1058 0.96 21 31 0.00038 0.033 15.9 0.5 1 23 1063 1086 1063 1086 0.95 22 31 0.00026 0.023 16.4 2.0 1 23 1091 1114 1091 1114 0.98 23 31 0.0035 0.31 12.9 0.7 2 23 1117 1139 1117 1139 0.96 24 31 0.0065 0.57 12.0 1.5 1 23 1222 1245 1222 1245 0.97 25 31 0.01 0.92 11.4 0.3 2 23 1318 1341 1317 1341 0.95 26 31 0.00014 0.012 17.2 0.3 3 23 1348 1369 1347 1369 0.94 27 31 0.0055 0.49 12.2 3.6 2 23 1374 1396 1373 1396 0.93 28 31 0.0014 0.12 14.2 3.4 1 23 1401 1424 1401 1424 0.98 29 31 1.3e-05 0.0012 20.5 5.0 1 23 1428 1451 1428 1451 0.97 30 31 0.00095 0.084 14.6 0.3 2 23 1458 1479 1457 1479 0.96 31 31 2.7e-05 0.0023 19.5 0.4 1 23 1485 1507 1485 1507 0.98
Sequence Information
- Coding Sequence
- ATGTTTGAAAAGAAGAAGGATTTGAGGTTACATAAACAACTGGTCCATGCATATGTTACTAAATGCGATGAAGAGATTGAGGTAGAAATTAAAGGAGAACCGATAGAGACTGATACTGAGGTAAAACAATTGGATCCCGATGCAATAGAAAAGAAAAGGATAGCGAAATTAAGACGCGAGAACATAGCGAGCGTTCTAAACATGTCCACGGCCACGCCTTTCAAATACTACATGAATAGGTTCCGTTGTTTCTATTGCTCAAAGAGCCATCCAGAATTTGAACCAATCAAAACTCACATTCTCACCAAGCATCACTACTGCGACCCTGAAGGTATAGCCTTGAAATCTATTAAAGGGAAAGATGCCATAGTCAAAGTAGACATTACTTCCCTAGCCTGCAGGCTATGCTGCACCCCATGTCCTGATCTAAACGAACTCTCCGACCATTTAGTTTCAAATCACCAAACAAAACACGATAAAACCATGATCGACATAGTCCAACCCTTTAAAATAGCCAAGGACAACATGGCTTGTCCACTATGCGCGAACGTTTCTTTTAGGTACTTTGTAAAACTTTTAGAGCATATGAATGAAAGTCATTCAAATAACAATGTGATATGTGTTTACTGCGGCCAAGCGTTTAGGAGTACGCCGTCCTATAGAGGTCATCTAGCGAGATATCATCGACCCAACTCGTGCAAATGTCCCGACTGCGATCTAGTGTTTCCAAATACGCCTAAACTAATAACGCATAGAGCAAATGCACACGGAGCTAAGGCTTTCAAGTGCACCAAATGCAGCGAGAGATTTGCTACGCAGTATCTTAGGCAGAAACACCTCATAGACGCACATGGTGCAGGACATAAATGCACTTACTGCGACAGGGTGTTCGCTAGGAACTCCTTCATGAAAGACCATATCAGGAAATTACATTTAAAGGAGAAGAACGTTGAATGCTCTGTGTATGAAATTGGGCTGAAAAACGTGAAAAGCACCAATTATCAGAAGAGGAGAAATCTACAAATAATATTCAACAACACCACGATCATACCGTTCAAATGGCGGCAAAAATATCTCTGTTTTTATTGTGGCGATGACGTGGCGGATTATGACGCGCTTAGGAATCACACGAGAGCTCACGGACCGTGTACACTACGCGACCGTGCGCTTACGCGCGTCTCTGGATCTGACGTCGAGATCAAAGTTGACGTGTCCGACATAACGTGCCAATTGTGCAACGAATCTCCCCCCAACTTCGACGACATTATATCGCACTTAATACACAAACATAACCTGCCTTATGACAAACACGCCGATCTTCTTATCGTCAAATATAGATTAGCTGATCTCAAATGTTTACTATGCGAGGAGAGTTTCAATCACTTCAGCAAGCTCATCGTTCATGTTAATAACAGCCATCCTTTAAAGGTCCTTTCCTGTAACGTCTGCCATCAGAAATTTAACAAGCAAAGAGATTTAACAGCTCATTTCAGATCTTACCATAAAAAGGGAGGATACACTTGCAACAAGTGTGCTATATCTTTCCCCACCAACTGGGCTCTTAGCAATCACAAATTCAAAACACACTCGTCTGCTTGTAACATATGTTTCAAAAGCTTCTCTTCATCTGATAAACGGCTGAAACATATGAAATCAGAGCATGTAGGTGATACCTTGTTGCAATGCGGGTTTTGTTCGAAAACTATGAATACTAAACAGGGTTTTTTGAGACACGCGGCCGGCTGCACATCCGCGAAAGACGATTCCAAATCGCAACATATCATCGATGAGGTTGTGTCTATAGATGATACGGAAAGAAGACCTAATGTCAAACAAGTTAGAAATAACATCGCGTGTATACTGAACATGTCTACAGCGATACCTTTCAAgcattttatgaataaattcagaTGCTTCTATTGCTCTAGACATTTCATTGAATGCGAGGAACTCAAAGATCATACTATGATCGAACACCCCCACTGCGATTCTAAGTTTAAATCCATGAAACTACGCAATAGAGAggatatttcaattaaaatagaCATATCAACATTATCATGTAAAATGTGCTTTGAATCTATAAACGATTTGGACCATTTAATTGACCATCTGACCTCCGAGCATAAAGCGCGGTTCGATAAGTCTATAGAAATGAATATTCAACCTTACAGACTGATAAAAGACAATTTCGCCTGTCCTTTTTGCGGAGAAGTGTTTAGGTACTTTAGCACTCTTTTAAGACATGTTAGTATCGCCCATAcggataataaaaatatatgcatGTACTGCGGAAAGTCATTTAGAACTAAGCCAAATTTGCGGGCTCACGTAGCGCGGCGTCACAAAGCAGGCAAGATTTACAATTGTGACGCTTGCAAAATAGAATTTACAAGAACAGTAGATCTCAGGTTGCACATGGGCAGGGTCCATGGCGACAAGACTGTAGACTGTCCGGAGTGTCCGGAGAAATTCGTATCGCAATACGCGATGCAAAGACATTTAATCACAATGCACGGCTCCGGTCACAAATGCTCCTACTGTGGAAAATTGTTCACAAGAAATTCCTTCATGGATAACCATATAAGACGGACGCATCTCAAAGAGAAAAACGTGCAGTGCTTACTCTGCAACGACAGATTTTTCGATGCTGCGCTCCTTAAAAACCATATGGTGAAACATATAGGGGAGAGGAACTTCCACTGTGACGTGTGCGATGAATATCCGCACCGCCCGTACGACAGCTGTACCTCTCAGCGGCGGAGggaaaatttacaaatattattcaataacaCCTCCGTGATGCCTTTCAAATGGCGGGGCACGTATCTATGTTTCTACTGCGGGAAAAACTATACAGAGTATCCGGAGTTCAGAAAGCACACTAAATCACACGGTCTCTGCTCAACAGACGATTACTCACTCAAAATCATTAAAGGGAACcacattgaaataaaaattgacgTCTCCGATATCGTTTGCGAGATTTGCTGCGACCCTTTCAATAGTTTTGACGAAGTCGTCGAGCATTTGAACTCGAAACATAATCTGAGATACGATACTAGCGTACAAATCCCTTTCCAATTGTACAGACTGTCAGACTTCAGGTGCTTGCTATGCGATGAGCAGTTTCACTACTTCGGATACTTGGTAAAACACGTCAACAACGTCCATCCACAAAATTGCTTCATATGCGATGATTGTGGACTCAGCTTCAATAAGAAAAGGGATCTCGCTCTGCATTCGCGAAATAATCATCGCCTGGGAGGATACCCGTGTGACCAATGCACAAGCAATTTCAAAACAAAAGGCCTGTTGCGGAAACATCAAAACACATTCCATTTCAGAAAATGCAAAGACTGCTCCTTAACTTTCGCATCTCGCAGCATTTTACAGAAACACATACAGCTAGACCATCCGGACGATGGCAGTTTGAAGTGTATTTATTGTGCGAAAGAAATGCATTCCAAGCAGGGACTGAAACAGCATCTTAATAAATGCGAAGTGAGACTGCTTTCTCAAATCGACGCTCCGCTTCCTAACAACGCTTTTGAAGATTCCTACGTTGAACCCAGAAAGAAACAGAATGTCTCGCAAATTAGAGAAAATATACAATGCGTGCTCAACATGTCCACTGCTATACCTTTCAAATTCTTCTCAAAGTATTCGTGTTTTTACTGTTCCAAAAAGTTTGTCGAGTTTGAAGAACTTAAAGAACACACTTTGAGGGAACATCCTATTTGTGACGTCAAATCCAAGTGCATGAAGAAATGCAAAGGTGAACGGATAAATGTTAAAGTGGATGTCGCAAATTTAGCTTGTAAAATTTGCTGTCGGCCTATCGATGACTTAGATATCTTAATAGACCATCTTATCGCTGACCATAAAGCTAATTACGACAAGTCTCTAAAACGTTGCTTCGAAGCTTTCCACATAATCAAAGATAACATACCGTGTCCCCTATGTTCCGAGAAGACTTTTAGATACTTCAGCACTCTTCTAAGACATATCAACTCCGAGCACAGCAATAATAACAGAATCTGCGATTTTTGCGGGCGCAGTTTTAAAAATGTCACAAATCTCAAAGTTCACATAACATACGCTCATACTGGCTCTTGCGAATGCGATGTATGCGggcttaaatttaaaaaccaatGGTGCCTCGCGCGGCATAAAGCTAAAACACACAACGCGAAAGACTACAAGTGTCCTAAATGCCCCGAACAATTCCAATCTCAGTATCATAAGCAGAAGCATCTAATAACTACCCACGATATCGGTCATAAATGTAGTTACTGCGGGAAAATGTTCACTAGGAATTCCTTTATGAAGGATCATATCCGTAGAACGCATTTGAAGGAGAAGAACGTGCCTTGCTCAGTTTGTAATGAAAAATTCTTCGACAACTATCTCCTTCGCATGCACATGGTGAAGCATGAGGGAGAGAGGAAATTTAGCTGTGAGGTGTGCGGCAAAGCGTTTCTCAGGCGGAGTAATCTCAGCTCTCATATGGACATGCACAAGAAGTACGGGCATGTACAAGTTTAG
- Protein Sequence
- MFEKKKDLRLHKQLVHAYVTKCDEEIEVEIKGEPIETDTEVKQLDPDAIEKKRIAKLRRENIASVLNMSTATPFKYYMNRFRCFYCSKSHPEFEPIKTHILTKHHYCDPEGIALKSIKGKDAIVKVDITSLACRLCCTPCPDLNELSDHLVSNHQTKHDKTMIDIVQPFKIAKDNMACPLCANVSFRYFVKLLEHMNESHSNNNVICVYCGQAFRSTPSYRGHLARYHRPNSCKCPDCDLVFPNTPKLITHRANAHGAKAFKCTKCSERFATQYLRQKHLIDAHGAGHKCTYCDRVFARNSFMKDHIRKLHLKEKNVECSVYEIGLKNVKSTNYQKRRNLQIIFNNTTIIPFKWRQKYLCFYCGDDVADYDALRNHTRAHGPCTLRDRALTRVSGSDVEIKVDVSDITCQLCNESPPNFDDIISHLIHKHNLPYDKHADLLIVKYRLADLKCLLCEESFNHFSKLIVHVNNSHPLKVLSCNVCHQKFNKQRDLTAHFRSYHKKGGYTCNKCAISFPTNWALSNHKFKTHSSACNICFKSFSSSDKRLKHMKSEHVGDTLLQCGFCSKTMNTKQGFLRHAAGCTSAKDDSKSQHIIDEVVSIDDTERRPNVKQVRNNIACILNMSTAIPFKHFMNKFRCFYCSRHFIECEELKDHTMIEHPHCDSKFKSMKLRNREDISIKIDISTLSCKMCFESINDLDHLIDHLTSEHKARFDKSIEMNIQPYRLIKDNFACPFCGEVFRYFSTLLRHVSIAHTDNKNICMYCGKSFRTKPNLRAHVARRHKAGKIYNCDACKIEFTRTVDLRLHMGRVHGDKTVDCPECPEKFVSQYAMQRHLITMHGSGHKCSYCGKLFTRNSFMDNHIRRTHLKEKNVQCLLCNDRFFDAALLKNHMVKHIGERNFHCDVCDEYPHRPYDSCTSQRRRENLQILFNNTSVMPFKWRGTYLCFYCGKNYTEYPEFRKHTKSHGLCSTDDYSLKIIKGNHIEIKIDVSDIVCEICCDPFNSFDEVVEHLNSKHNLRYDTSVQIPFQLYRLSDFRCLLCDEQFHYFGYLVKHVNNVHPQNCFICDDCGLSFNKKRDLALHSRNNHRLGGYPCDQCTSNFKTKGLLRKHQNTFHFRKCKDCSLTFASRSILQKHIQLDHPDDGSLKCIYCAKEMHSKQGLKQHLNKCEVRLLSQIDAPLPNNAFEDSYVEPRKKQNVSQIRENIQCVLNMSTAIPFKFFSKYSCFYCSKKFVEFEELKEHTLREHPICDVKSKCMKKCKGERINVKVDVANLACKICCRPIDDLDILIDHLIADHKANYDKSLKRCFEAFHIIKDNIPCPLCSEKTFRYFSTLLRHINSEHSNNNRICDFCGRSFKNVTNLKVHITYAHTGSCECDVCGLKFKNQWCLARHKAKTHNAKDYKCPKCPEQFQSQYHKQKHLITTHDIGHKCSYCGKMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRMHMVKHEGERKFSCEVCGKAFLRRSNLSSHMDMHKKYGHVQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -