Lstr041055.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- ZBTB41
- Assembly
- GCA_949128165.1
- Location
- OX421928.1:8293172-8296203[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.43 37 6.3 0.4 9 23 14 28 13 28 0.95 2 18 0.016 1.4 10.8 8.7 1 23 34 56 34 56 0.98 3 18 0.00017 0.015 17.0 2.8 2 23 76 97 75 97 0.96 4 18 1.9e-05 0.0017 20.0 0.5 1 23 103 125 103 125 0.97 5 18 7.4e-06 0.00065 21.3 0.2 2 23 129 150 128 150 0.97 6 18 2.5e-05 0.0022 19.6 2.8 1 23 156 178 156 178 0.97 7 18 1.4e-05 0.0012 20.4 1.2 1 23 184 207 184 207 0.98 8 18 0.00022 0.019 16.7 4.6 2 23 381 402 380 402 0.97 9 18 7.7e-06 0.00068 21.2 3.0 2 23 407 428 407 428 0.97 10 18 2.6e-06 0.00023 22.7 0.9 3 23 436 456 434 456 0.98 11 18 5.2e-06 0.00045 21.8 1.8 1 23 462 484 462 484 0.99 12 18 1e-06 9.2e-05 24.0 0.6 1 23 490 512 490 512 0.98 13 18 4.4e-06 0.00039 22.0 4.1 1 23 518 540 518 540 0.98 14 18 1.2e-06 0.00011 23.7 1.8 1 23 546 568 546 568 0.96 15 18 1.4e-05 0.0012 20.4 4.9 1 23 574 596 574 596 0.98 16 18 0.0023 0.2 13.5 0.3 3 23 616 636 614 636 0.97 17 18 8e-06 0.0007 21.2 2.8 1 23 642 664 642 664 0.98 18 18 4.8e-05 0.0042 18.7 6.4 1 23 670 692 670 692 0.97
Sequence Information
- Coding Sequence
- ATGACTAATCAAAGCAGCCATAATTTTACTATCTTTTTCAGATTCACCCAAAAGTCCGTGCTAATCAAGCACGTCCGCATCCATACCGGAGAGACACCATATTCGTGCCACATCTGCCACAAACAGTTCTCCCGCAGCTTCACCCTCGCCTGCCACCGCCGCGTCCACGGAGACGTTAAAGAAGAGCCCCCCATGAGACCACCACCCCCACCCATAGAACAATGGACTTGTGGTGTGTGCAATAAAAcattcaaaaataaatcttacaGACATTCACACATGCTGATACATACGCGCACTAAGGAATTTCAATGTCAAGTGTGTGAGAAAAAATTCACAAGTGAAGACAGTTTAGTGAAGCACGTGACAGTGCATAATCAAGTTAAATGTAGTGTTTGTGATAAGGAATTGAAAACTCAAGCTAATTTAGCTAGGCATATGTTGGTACATACTGGGGAACGGCCGTTTGCATGTAGTCATTGTAGTAAAAGATTTACACAAAAGTCGGTTCTGATTAAACATGAGAGAATACATACGGGAGAGATGCCATACGAATGTGAAATATGTTTGAAGAAGTTTTCTAGAAGTTTCACGCTGGAGAATCATTTGAAGCGAATACATAAGAAAGAAAAAGATGAGAATACTGAAAATAGAACTGAGAAGAAAATTTCTGAACCTAAGAAGGAAACTCGTGAAACGAAAAAGGATAGTTCTCAAACTGAGAATTCAGAGTGCGTTATGAAGCCGTTTTGGTGTGAAAACTGTGATAATTGGTACAACAACAAAGATTTTTATATGCACGAATGTACTCATATAAATAAGTTGAACTTAATTGATTTTTATGAAGATAATGCACCAGAAAAAGATTGTAGTGATTATGGAGACAATGAAAGAAGTCAAAGTCCATTTTTAGAGTTAGAGGGAAGAGTTAGAGAGAAGGAAGACGTTAAAAAAGAAAAGATAGAGCATTATAGTATAATTGATCTACATAAACAGGAGAACGATTTTAGAAGTTCGCTAGCGAATACcgcagaaatacaagaaaacaacgCATCAATAAACACTGATATTGTATTTGATAATAAAAAGGGAATATCAAAAAAAACGAATGAAAAAATTGCAAAAGTCCCCAAAAAATGGTCATGTAAGTTTTGCAAAGAAACATTTAAGAAGAAAACGCAATACCAGAAGCATTTAAAAACCCACGAAACTAAAGGCTACTGTCAAATATGTAAAAAGCATTTCAATAGCAATGGTAATTTAATCAGACATATGCTGAGGCATTCTGGAGAGAAACCTTTCGGCTGTGATATCTGTAATAAGCGATTTACTCAAAAGAGTGTTTTAATCAAGCACCAAAGAATACATACAGGCGAACTGCCTTACAAGTGTGacatttgtgataaaaaatTTGCTAGAAGCTTCACTCTGTTAAACCATAAAAAAGTCCACAGCACTGTTAAACCGTATTCTTGCCAATATTGCCCTAAAGCATTCACTCAGCGAAGCGCTTTAACGAtacacgaaagaaatcatactGGTGACAAACCATTTTCCTGCAAACAGTGTAACAAAAAATTCACTAGCAACAGCACTTTGACTAATCATTACAAAATTCATAATGGCATCAAACCATTTTTATGTGAGATCTGCAATAAGCAGTTTACGACTAGTAGTAATTTCTATAGTCATATGAGAATACATCGAGGGGATAAGAGACATACTTGCGACGTGTGCCAAAAGAAGTTCTACACTAATAGCAGCTTGACAAAACATAAACGAGTTCATACTAAGAAGGTATGCAAAGTAGAACCGATACCGGATGACCCGACCAAACAATTCGGCTGCAGCGTGTGTAGACGACGCTTCGCTAACATCTATCTGTTGGAGCGACACGCGCGCGGGCACTCTGGTGAAAAACCATTCGAGTGTGATCAGTGCCACAAGAAATTTGCGCTCAGCGGCGACTTAAACCGACACAGGCGAACACACACAGGAGAAAAACGCTATTGCTGCGATATCTGCAACAAACAGTTCACCAGGAGCGGCACCCTCAAACACCATCAGAAGCTACACGATACACATCCTGGGCTCACGTGA
- Protein Sequence
- MTNQSSHNFTIFFRFTQKSVLIKHVRIHTGETPYSCHICHKQFSRSFTLACHRRVHGDVKEEPPMRPPPPPIEQWTCGVCNKTFKNKSYRHSHMLIHTRTKEFQCQVCEKKFTSEDSLVKHVTVHNQVKCSVCDKELKTQANLARHMLVHTGERPFACSHCSKRFTQKSVLIKHERIHTGEMPYECEICLKKFSRSFTLENHLKRIHKKEKDENTENRTEKKISEPKKETRETKKDSSQTENSECVMKPFWCENCDNWYNNKDFYMHECTHINKLNLIDFYEDNAPEKDCSDYGDNERSQSPFLELEGRVREKEDVKKEKIEHYSIIDLHKQENDFRSSLANTAEIQENNASINTDIVFDNKKGISKKTNEKIAKVPKKWSCKFCKETFKKKTQYQKHLKTHETKGYCQICKKHFNSNGNLIRHMLRHSGEKPFGCDICNKRFTQKSVLIKHQRIHTGELPYKCDICDKKFARSFTLLNHKKVHSTVKPYSCQYCPKAFTQRSALTIHERNHTGDKPFSCKQCNKKFTSNSTLTNHYKIHNGIKPFLCEICNKQFTTSSNFYSHMRIHRGDKRHTCDVCQKKFYTNSSLTKHKRVHTKKVCKVEPIPDDPTKQFGCSVCRRRFANIYLLERHARGHSGEKPFECDQCHKKFALSGDLNRHRRTHTGEKRYCCDICNKQFTRSGTLKHHQKLHDTHPGLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -