Lstr037830.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- Znf296
- Assembly
- GCA_949128165.1
- Location
- OX421925.1:5968043-5974888[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.7e-05 0.0015 20.2 1.1 3 23 167 187 165 187 0.97 2 20 1e-05 0.00091 20.8 3.1 1 23 193 215 193 215 0.98 3 20 6.2e-05 0.0055 18.4 0.2 1 23 221 243 221 243 0.98 4 20 1.3e-05 0.0011 20.6 1.9 1 23 249 271 249 271 0.97 5 20 0.00015 0.013 17.2 0.6 1 23 298 320 298 320 0.97 6 20 4.7e-05 0.0041 18.8 2.1 1 23 326 348 326 348 0.93 7 20 0.00016 0.014 17.1 1.4 1 23 354 376 354 376 0.98 8 20 1.1e-06 0.0001 23.8 0.2 1 23 382 404 382 404 0.97 9 20 0.0019 0.16 13.7 4.0 1 23 410 433 410 433 0.98 10 20 0.00066 0.058 15.1 0.8 1 23 466 488 466 488 0.99 11 20 0.00011 0.0095 17.6 0.8 1 23 494 516 494 516 0.93 12 20 0.0024 0.21 13.4 2.4 1 23 522 544 522 544 0.98 13 20 6.5e-06 0.00057 21.5 0.3 1 23 550 572 550 572 0.98 14 20 0.0033 0.29 12.9 6.2 1 23 578 601 578 601 0.96 15 20 0.0058 0.51 12.2 0.3 1 23 609 631 609 631 0.96 16 20 0.00013 0.011 17.4 0.7 1 23 648 670 648 670 0.98 17 20 2e-05 0.0017 19.9 2.7 1 23 676 698 676 698 0.98 18 20 9e-05 0.0079 17.9 2.5 1 23 704 727 704 727 0.97 19 20 5.4e-06 0.00048 21.7 0.1 1 23 733 755 733 755 0.98 20 20 3.3e-05 0.0029 19.2 0.8 1 23 761 784 761 784 0.95
Sequence Information
- Coding Sequence
- ATGGAGGAGTTGCACTCGTGTAGCTGCTGCCTGGTGCGCCCTCCGGAGAAGGGGCTCAAGACGCTGTATAAACATCTCGGCAAAACAGAGATATATTACGACATGCTAAAAGACTGCTTCGATATAAACCTTAGTTTGGGAAATGACGAGTGTGGTATCTGCGAGGCGTGCGTGGGGCGCCTGCGGGACGCGAGCGAGTTCAAGCAGCAAGTGCAGCGCAGCCAGGCAGAGCTGCGCTCGCGGATGGCAAGTGACAGAATCCGAATCAAGTTGGAGAAATCTGAACATGAAACtattataaTTGATGTCAAGCAGGAGAAGCCCGACGTGGAGACGGCTGATGAGGATGTCGTGTCAGTAGCCGTTTATGACGGCCCATCAGAGCCTTCAGCACTCGTCCCTACAACGTCTGACAACGTTTCTCCCCCGCAGGAACCGACATTAGCAAAAAACGACGCTTCTAAGGTGCCCCCTGTTTCTAGCCGCGACAAACAAAATTGCGGTATATGTAGCAAAACTTTCGCTAACTCAACCTCGCTCAAAGTCCATCGCCGGTCCCACACAGGAGAGAAACCTTACTCGTGCAATCAATGCGATAAAAAATTCGCACAAAAGattcatttaaataatcatTACGCAACCCACAAAGGAAAGCCTGATTTTAAATGTGAAGTATGTGACAAGCGTTTCCCGCTAAGATGGCAATGGGCTGTACACATGCGGCTACATACTGGAGAAAAGCCGTATGCGTGTGAAATATGCAAGAAAACTTTTAGAATTAGATCCAACTTGAACAGTCACAAAAAAAGCCATATGAAATATGATCCTAGTCGAATAGAGCCAGGACAAATAATAACAGAAAAGAACGACCAGGTGTCAGGACAAACAAGTTTCATATGTGACATATGCAAAAAACTATTTGCGGAAAAGAAATACTTAGAAGTTCACATGAAAAATCATTCCGGTGATTATCCATTCACTTGCGAGATTTGCGGAAAAAGATTCAATAAGAAGTCGCAATTGGATAATCATAAATTTGATCATGCGGGGGGAAAACCTTTTAAATGTGAAAAATGCATTAAACAATTTACAACGAGAAGTGCTTTAAACCTGCATTTAAAAATTCACACTGAGGATTATAGGTTTCCATGCGATTTATGTGATAAACGATTTGTACAAAAAGAGGGTTTGGTTCGACATATGCGTGGACACACAGGTGAAAAACCGTACAGCTGTGATATATGCCAAGGGAACTTCCGCTACAGGTGCAGCTTAAAGAAACATTTGCGAATCAAGCATAACCAAGTTATGGATAATCATTCTGAGATGAAAAAGACAAGTAATTCCCGAAATGATATCAAAAAAGAATCGCCTGAAGGATCAAAAGAGACCAATTACACAtgtgatatatgcaaaaaacaATTTGCAGCAGAAAACTACTTAAGCACGCATTTAAAAAGTCACTTTGGAAATTATCCATTCTCTTGTGAGATCTGCGAAAGGCGATTCAATACGCAGTCTGCTTTGAATATTCATAAGTTCGATCACACCGGTGGCAAACCTTTTAAATGTGAACAGTGCAATGCAATGTACACATCAAAGAGAGCTTTGCTACACCATTCTAAAATTCACACTGAGAATCACTCTTACGCGTGTGATGTATGTAAAAAGCGATTCGTATTAAAAGAAGCTTTGACTCAGCACATGCGCGTACACACTCGCGAACAGCCTTATTGCTGTGACATATGCCAAAAGAAGTTCCGATATAGATGTGGCTTAAGAAATCATCTATTAGTCAAACACAACCAAGTTATGGCTAAACAATTTTGTTGCGATATTTGTGGCAAACTATTCGCGTTCCGGGGGCCTTTAGCTACACATGTGGCTAAACATGTggagaaagaaaagaaaaataattccTTAAAGGAAGGGCACAAGGAATATATGTGTGAAATATGTAGCAGACGATTTTCATCGAAAAGTATCCTAAGAAATCATATAGGAACACATTCTACAGAAAAACCTTTTGAGTGCGCTGTTTGTAATAAGAAATTCCGACAGAAGAGACATATGCAGGATCATATGCTGGTGCATGAGGACTTTAAACAGCATTCTTGTGATGTATGCGGACAGCAGTTCAGACATAAGTCTGCCATGACGGTCCATGTTCGAAGAGTGCATTCAGAGAGCAATACGTATAGTTGTGATATTTGTGGGAAGTCATTTCCAGTACTTGCTGAATTGAAAGTGCATTATCGAGGACACACTGGAGAGAGGCCATATGCCTGCAATATATGCTATAAGAAATTTACGCGGCAATCCGGAGTCAAGAAACATATTGTAAAGGTTCACCGTGAGGATTCTACgaaattcgttaaattaaaagaatttaATAATCCTTACTAA
- Protein Sequence
- MEELHSCSCCLVRPPEKGLKTLYKHLGKTEIYYDMLKDCFDINLSLGNDECGICEACVGRLRDASEFKQQVQRSQAELRSRMASDRIRIKLEKSEHETIIIDVKQEKPDVETADEDVVSVAVYDGPSEPSALVPTTSDNVSPPQEPTLAKNDASKVPPVSSRDKQNCGICSKTFANSTSLKVHRRSHTGEKPYSCNQCDKKFAQKIHLNNHYATHKGKPDFKCEVCDKRFPLRWQWAVHMRLHTGEKPYACEICKKTFRIRSNLNSHKKSHMKYDPSRIEPGQIITEKNDQVSGQTSFICDICKKLFAEKKYLEVHMKNHSGDYPFTCEICGKRFNKKSQLDNHKFDHAGGKPFKCEKCIKQFTTRSALNLHLKIHTEDYRFPCDLCDKRFVQKEGLVRHMRGHTGEKPYSCDICQGNFRYRCSLKKHLRIKHNQVMDNHSEMKKTSNSRNDIKKESPEGSKETNYTCDICKKQFAAENYLSTHLKSHFGNYPFSCEICERRFNTQSALNIHKFDHTGGKPFKCEQCNAMYTSKRALLHHSKIHTENHSYACDVCKKRFVLKEALTQHMRVHTREQPYCCDICQKKFRYRCGLRNHLLVKHNQVMAKQFCCDICGKLFAFRGPLATHVAKHVEKEKKNNSLKEGHKEYMCEICSRRFSSKSILRNHIGTHSTEKPFECAVCNKKFRQKRHMQDHMLVHEDFKQHSCDVCGQQFRHKSAMTVHVRRVHSESNTYSCDICGKSFPVLAELKVHYRGHTGERPYACNICYKKFTRQSGVKKHIVKVHREDSTKFVKLKEFNNPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -