Lstr008453.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421904.1:81475-92434[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.57 50 5.9 0.4 2 23 203 226 202 226 0.87 2 25 0.028 2.5 10.0 0.0 6 23 265 283 263 283 0.94 3 25 1.7 1.5e+02 4.4 0.0 3 23 292 312 291 312 0.94 4 25 0.0015 0.13 14.1 0.2 2 23 323 346 322 346 0.95 5 25 0.0015 0.13 14.1 0.2 2 23 364 387 363 387 0.95 6 25 0.0015 0.13 14.1 0.2 2 23 405 428 404 428 0.95 7 25 0.0015 0.13 14.1 0.2 2 23 446 469 445 469 0.95 8 25 0.0015 0.13 14.1 0.2 2 23 487 510 486 510 0.95 9 25 0.0015 0.13 14.1 0.2 2 23 528 551 527 551 0.95 10 25 0.0015 0.13 14.1 0.2 2 23 569 592 568 592 0.95 11 25 0.0015 0.13 14.1 0.2 2 23 610 633 609 633 0.95 12 25 0.0015 0.13 14.1 0.2 2 23 651 674 650 674 0.95 13 25 0.0015 0.13 14.1 0.2 2 23 692 715 691 715 0.95 14 25 0.0015 0.13 14.1 0.2 2 23 733 756 732 756 0.95 15 25 0.0015 0.13 14.1 0.2 2 23 774 797 773 797 0.95 16 25 0.0015 0.13 14.1 0.2 2 23 815 838 814 838 0.95 17 25 0.0015 0.13 14.1 0.2 2 23 856 879 855 879 0.95 18 25 0.0015 0.13 14.1 0.2 2 23 897 920 896 920 0.95 19 25 0.0015 0.13 14.1 0.2 2 23 938 961 937 961 0.95 20 25 0.0015 0.13 14.1 0.2 2 23 979 1002 978 1002 0.95 21 25 0.0015 0.13 14.1 0.2 2 23 1020 1043 1019 1043 0.95 22 25 0.0015 0.13 14.1 0.2 2 23 1061 1084 1060 1084 0.95 23 25 0.0015 0.13 14.1 0.2 2 23 1102 1125 1101 1125 0.95 24 25 4.6e-05 0.004 18.8 0.8 1 23 1131 1155 1131 1155 0.98 25 25 0.0015 0.13 14.0 0.9 6 23 1165 1182 1164 1182 0.98
Sequence Information
- Coding Sequence
- ATGTTCGTTTCTCACAAGCTCAGCCCTTCTAAGAAGACCTTTCAAAAGCCTAACATCTTGCGACGGAAAACCAAGGCCACCACAATAAGATCTGGACCTTGCAATCCCAGCCCGGCACCCACAGCAGCCGAGACTAACCTCTCTGTGGTAGACTGGGAAGCCCAAGACCAGAGACCTGTGAAAAGAGTGCAGTTGGAGGTGCTTGCACAAGATGTGGCTTGTAGTGTGAGCACACACGACACCCTGGCTGGAGTGCTAGTCCGAGATGTGGCCAACACACTGGAGCGGGAAACAAATACTGTGGAGGAGGAGACTGCTCTTGATGatgAAATAGAGCCTAGCACGGGCACCAACCAGGAACTGGTGGATGTGGAGGCTTTCTTAAACGGGCCCCGGACTACACAGTTCAATACACAATATGAAGTTCAGAGTAAATTGGAAAGTAATTCTGCTCAAAAATGGCAAATAGATTTCGAAAATTCTACAGATAACATTATAATGGAACCTTTAGACGAGGGGCTGCAAGTGTTGCCGGCGGACGAGGACCCGGACGGGCCGGCGCTGGCCGCGGAGTACGACCACTTCACCATGAGGCCGGGCACTTTTATGTGCTTGGAGCCATCGTGCAACAAAGCGTTCCTCACGGAGCAGAAGCTGCGGCGGCACCGCGCCGTACACAACAAGCGCTCCCCGCGCCCCGCCAGCGTCGAGTGCCCGGCgggggcgcggggggcgccgGGGGAGGGGCAGGGGGCGCCGGGGGCGGGGCAGGGGGCGCCGGGGGCGGGGCGCTGCGGGCGCGTGTTCGCGGCGCGCGAGCAGCTCGCCCGCCACCTGCGCGACGACCACGTGCCCGAGGACGCGCTGCACGGATGCGGCCTGTGCGGGCGGCGCTTCTTCTGGGCGGTGGGGCTGCGCGCGCACGGGCGGGCgcacgcggcgcgcggcggggcgcGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTCAGTCCGACACTCGGCGCGGGAGGTGCTGCAGTGCCCGTGGCCGGGCTGCGGCCGCGCCTTCCGCCAGCCCTGCCGCCTGCGCGAGCACGCCAGGGCGCACACCGGCGACCGGCCCTACAGGTGCAAGCACCCGGGCTGCCCCTGGGCGTTCCGCACGGCGTCGAAGCTGCTGCGGCACGCGCGGCGTCACACGGGCGAGCGGCGTCACGCCTGCGCCTGCGGCCGCGCCTTCCGCCGCCGCGAGCATCTGCGCGAGCACCAGGCGCGCCACCGCCCGACGCTGTCGCTACCAGATACAGAAGATGGCAGCCCCGTCAGCAGACGGAGAACGTCGCGGGTGCCAGAGATGCCGGTCGTGGGGGCGGAGCCCGGTGCCGGCGCCCCGGGCACCACGCCCCCGGCGCCCCCGGCGCCCCCGGAGCCGTCGTCGCCCGAGGGCGCCGCGCTGGACGAGCGCCAGGGGGACGAGGACGAGTTCATGGTGCGGCTGGAGGCGGGCCCGGGCCCGCGGCGGGCGGAGGCGGAGCCCCGCGCGGCGCGCACGCACTGCACGTGGCCGCTGGCGCCCCCGCAGCCCGCCGTGGCGGAGGAGCCGGCGTGCAGCGTGCGCAGCGACCTGTTCCTGCCCGCGCACGACGACGACAGCCAACAAATGATCGGTGGAACGGCGAGCGCGGAGCCCCCGCTGGAGGCGGCCGCGTCGCCGCTGCCGGGCCTCGGGCTGCTCGACCTTATGCAGGAGGAGCTCTTGTACACGGACGCGGTGGACGAGTCCTTCCAGGTGCTGCTGCTCAGCGAGGAGCTCGGCTAG
- Protein Sequence
- MFVSHKLSPSKKTFQKPNILRRKTKATTIRSGPCNPSPAPTAAETNLSVVDWEAQDQRPVKRVQLEVLAQDVACSVSTHDTLAGVLVRDVANTLERETNTVEEETALDDEIEPSTGTNQELVDVEAFLNGPRTTQFNTQYEVQSKLESNSAQKWQIDFENSTDNIIMEPLDEGLQVLPADEDPDGPALAAEYDHFTMRPGTFMCLEPSCNKAFLTEQKLRRHRAVHNKRSPRPASVECPAGARGAPGEGQGAPGAGQGAPGAGRCGRVFAAREQLARHLRDDHVPEDALHGCGLCGRRFFWAVGLRAHGRAHAARGGAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRSVRHSAREVLQCPWPGCGRAFRQPCRLREHARAHTGDRPYRCKHPGCPWAFRTASKLLRHARRHTGERRHACACGRAFRRREHLREHQARHRPTLSLPDTEDGSPVSRRRTSRVPEMPVVGAEPGAGAPGTTPPAPPAPPEPSSPEGAALDERQGDEDEFMVRLEAGPGPRRAEAEPRAARTHCTWPLAPPQPAVAEEPACSVRSDLFLPAHDDDSQQMIGGTASAEPPLEAAASPLPGLGLLDLMQEELLYTDAVDESFQVLLLSEELG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -